EST Sequence: file=LIBc9, strand=+, description=gi|32986941|dbj|AK101732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061G11, full insert sequence 1 GGCGGGAGGA AGAAGGGAAT CTGATTGCTT CCTTCTTCCT TCTTCGATTC AGAATCACTT 61 TGTTTCTTCT TTCTTCTTCT ATCTATCTAT CTACCTGTGG AGACGAGAGG AGAGGAAATC 121 TATGGCGTCT CCTCCTTCGC CCTCCGCATC ACGCGCAGTC GCAGTCGAGA GATCACCGGG 181 GTTCGGCTTG GAGCCCTCCT CCTCCTCCTC CTCGTCGTCG TCGGCCCCCT CAAGGAATGA 241 GCTGCTGACT ATGGTGAAAA AACATTCCCA TTTGATTGGG TGGACAGTTG TTGATGCTGA 301 AGATGATGCA TCAGACGTGG GAATGGATGA TCGATTCTGG CATGAAATGC TTGATCTTTT 361 CTTCGTGCGT GGTAGGGTTT CAAAGAGGAG GGAAGAGGAT GACCTCGTCT TTTTTGTTAA 421 TAATAATATG AAAATGCATG GCCATGGGTT CAACGATAAC ATGGAAGATC CACCTCCTTT 481 TTTTGTGAGA AGATGGGCTC CTATGCTTGA AAAGATCAGC AATATAAATT CAGCTGGAGT 541 TGATTGGGAG CGTTCATTCT ATTTGAATTT AATTGCTCAC ACATCATACA CTGTTACAGT 601 TGCAATATGC AGTGTCAGGG ATCTTCGCAG CCGTGTAGAG AAAAGCAAAC CATTATCACC 661 AGTTTATAAG GTCACAAAAA CTGTGTATGC ATCCCCAAGC CGTGTAAATT TTCATCTTGA 721 TCGAAGAAAG GCTGTGGAAA CTGTACCTGC ATATCCCAAT ATTTGTTTCT CAGTTGATGA 781 CTTCGATGAT ACTTTTGATG CTGTTGTTTT GTCAGACCCC GAACATTGCT ATTGTGTGAT 841 TCTCAATGCA CATGATGGGG CAGCTTTTCC TGAAGACACT GAATCGAAGA ATGCCAGCTC 901 AAATCTACTA AACACTGGGA GCAACCAAGA AAAACCACCA AAGAGAACAC TCTTCTCAGG 961 CTACGTTAGC TACCAAAATG TTCGAGAAGC CTACAATGCT GGCAGATCAC AATTTGGGAG 1021 CTTACTCTCA CTCGGGCATG ACCAAACTAA ACTTGATAAA CTTTATATGA GGGGCCCTGA 1081 AGGGCGTGGG GAAGTTGAAG TAGCTGTTTC TGGAATTGCA GATCAGAGCC ATGAGAGATC 1141 AAAGAAAGAT CCAGGAGATA GCTTTCGAGT CTTTGTTCAT AGGGCAGCTT CTGCTGCATC 1201 AAAGCTGGCA AAGCATGCCT ACGAGGCTGC ATCTACCAAC AAACGATTTG ATCATGAGCT 1261 TCTGCCTCTG AAATGTTGCT TGATGTCGGT ATCTCTTCCT TGGGACTACA TTGCACATGA 1321 CCTGCTACAC AAGGAAACCC CTCCGCTGGA CCTATGAGAG ACTGCGAATT CCCATTGTGC 1381 ACCAGAAAGA ATGATATATG TGCATGATTG TGGGAAAGTT TGTGTCCCTT GGGCTCGATA 1441 TAGTGTAAGA AAACAGTGAG CAGAGAAGCA GTGCTGCGAT GTACATGTGT ACTTTAAACA 1501 GACTAAAACT TGTAGAATTT TCATGTGTGT TTGTACAATG TTGAAAGTAG GCGATGAAAT 1561 AATGTAAATA TATATTTTTT TGGTTGTCAT GAGGAAGACT CTTCACTGTT GCC Genomic Template: file=OSchr10, strand=+, from=206493, to=213903, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 206792 207031 ( 240 n); cDNA 1 234 ( 234 n); score: 0.963 Intron 1 207032 207746 ( 715 n); Pd: 0.000 (s: 0.94), Pa: 0.999 (s: 1.00) Exon 2 207747 207942 ( 196 n); cDNA 235 430 ( 196 n); score: 1.000 Intron 2 207943 208026 ( 84 n); Pd: 0.999 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 208027 208101 ( 75 n); cDNA 431 505 ( 75 n); score: 1.000 Intron 3 208102 208530 ( 429 n); Pd: 0.812 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 4 208531 208637 ( 107 n); cDNA 506 612 ( 107 n); score: 1.000 Intron 4 208638 209190 ( 553 n); Pd: 0.912 (s: 1.00), Pa: 0.955 (s: 0.96) Exon 5 209191 209248 ( 58 n); cDNA 613 670 ( 58 n); score: 0.966 Intron 5 209249 210180 ( 932 n); Pd: 0.926 (s: 0.96), Pa: 0.972 (s: 1.00) Exon 6 210181 210240 ( 60 n); cDNA 671 730 ( 60 n); score: 1.000 Intron 6 210241 210317 ( 77 n); Pd: 0.992 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 7 210318 210392 ( 75 n); cDNA 731 805 ( 75 n); score: 1.000 Intron 7 210393 210501 ( 109 n); Pd: 0.989 (s: 1.00), Pa: 0.899 (s: 1.00) Exon 8 210502 210639 ( 138 n); cDNA 806 943 ( 138 n); score: 1.000 Intron 8 210640 211763 (1124 n); Pd: 0.808 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 9 211764 211818 ( 55 n); cDNA 944 998 ( 55 n); score: 1.000 Intron 9 211819 212131 ( 313 n); Pd: 0.987 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 10 212132 212254 ( 123 n); cDNA 999 1121 ( 123 n); score: 0.992 Intron 10 212255 212642 ( 388 n); Pd: 0.970 (s: 0.98), Pa: 0.986 (s: 1.00) Exon 11 212643 212854 ( 212 n); cDNA 1122 1333 ( 212 n); score: 1.000 Intron 11 212855 213324 ( 470 n); Pd: 0.985 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 12 213325 213604 ( 280 n); cDNA 1334 1613 ( 280 n); score: 0.996 MATCH OSchr10-v3+ 32986941+ 0.992 1619 1.004 C PGS_OSchr10-v3+_32986941+ (206792 207031,207747 207942,208027 208101,208531 208637,209191 209248,210181 210240,210318 210392,210502 210639,211764 211818,212132 212254,212643 212854,213325 213604) Alignment (genomic DNA sequence = upper lines): TGCGGGAGGA AGAAGGGAAT CTGATTGCTT CCTTCTTCCT TCTTCGATTC AGAATCAATT 206851 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || GGCGGGAGGA AGAAGGGAAT CTGATTGCTT CCTTCTTCCT TCTTCGATTC AGAATCACTT 60 TGTTTCTTCT TTCTTCTTCT ATCTATCTAT CTACCTGTGG AGACGAGAGG AGAGGAAATC 206911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTCTTCT TTCTTCTTCT ATCTATCTAT CTACCTGTGG AGACGAGAGG AGAGGAAATC 120 TATGGCGTCT CCTCCTCCTT CGCCCTCCGC ATCACGCGCA GTCGCAGTCG AGAGATCACC 206971 ||||||| | ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGCG--T -CTCCTCCTT CGCCCTCCGC ATCACGCGCA GTCGCAGTCG AGAGATCACC 177 GAGGTTCGGC TTGGAGCCCT CCTCCTCCTC CTCCTCCTCG TCGTCGTCGG CCCCCTCAAG 207031 | |||||||| |||||| | |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTCGGC TTGGAG--C- CCTCCTCCTC CTCCTCCTCG TCGTCGTCGG CCCCCTCAAG 234 GTAATCTCTA TCCCCATCCT AATTTTGGAC CCCAACCCTC GCCCCCGCCC CCGCCTGCCA 207091 .......... .......... .......... .......... .......... .......... 234 // intron part 207092 207631 (540 n) not shown // //........ .......... .......... .......... .......... ........// CACCCAACAA TTCTGGTCGA TTTTGTTTTG AGCCTATCTC CATTTTCTGT AAAAGCATAT 207691 .......... .......... .......... .......... .......... .......... 234 GTCCTTATAT CCTTTTAAGC ACTTCTCAAC CTTTTGTTTC TTTTTGTCTT TTCAGGAATG 207751 ||||| .......... .......... .......... .......... .......... .....GAATG 239 AGCTGCTGAC TATGGTGAAA AAACATTCCC ATTTGATTGG GTGGACAGTT GTTGATGCTG 207811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCTGAC TATGGTGAAA AAACATTCCC ATTTGATTGG GTGGACAGTT GTTGATGCTG 299 AAGATGATGC ATCAGACGTG GGAATGGATG ATCGATTCTG GCATGAAATG CTTGATCTTT 207871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGATGC ATCAGACGTG GGAATGGATG ATCGATTCTG GCATGAAATG CTTGATCTTT 359 TCTTCGTGCG TGGTAGGGTT TCAAAGAGGA GGGAAGAGGA TGACCTCGTC TTTTTTGTTA 207931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCGTGCG TGGTAGGGTT TCAAAGAGGA GGGAAGAGGA TGACCTCGTC TTTTTTGTTA 419 ATAATAATAT GGTAAACTTC CAATCCTTCT CAGTTCCCCT TATTTTAGCT TACAGTGTTA 207991 |||||||||| | ATAATAATAT G......... .......... .......... .......... .......... 430 TCTTGTATGC TAACTGAGGC TCAATGCTGG TGCAGAAAAT GCATGGCCAT GGGTTCAACG 208051 ||||| |||||||||| |||||||||| .......... .......... .......... .....AAAAT GCATGGCCAT GGGTTCAACG 455 ATAACATGGA AGATCCACCT CCTTTTTTTG TGAGAAGATG GGCTCCTATG GTAAATTAAC 208111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACATGGA AGATCCACCT CCTTTTTTTG TGAGAAGATG GGCTCCTATG .......... 505 CAAGACTATC TTCATCAATT TCGATCATAT CAATAAATGC ATGCTTCCCT TTTTGGTAGT 208171 .......... .......... .......... .......... .......... .......... 505 // intron part 208172 208411 (240 n) not shown // //........ .......... .......... .......... .......... ........// AATTGACTTC CATAAGCTAG TGTTTGGTTC ATAACATACT TTCTACAGAA AAGAAGTCTC 208471 .......... .......... .......... .......... .......... .......... 505 TGATAATACA TACTAACTCT TGGTTTTTTA TTTGTTCTCC TTTGTTTTAT GTGGAGCAGC 208531 | .......... .......... .......... .......... .......... .........C 506 TTGAAAAGAT CAGCAATATA AATTCAGCTG GAGTTGATTG GGAGCGTTCA TTCTATTTGA 208591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAAAGAT CAGCAATATA AATTCAGCTG GAGTTGATTG GGAGCGTTCA TTCTATTTGA 566 ATTTAATTGC TCACACATCA TACACTGTTA CAGTTGCAAT ATGCAGGTAC GTTTCTGCCA 208651 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATTTAATTGC TCACACATCA TACACTGTTA CAGTTGCAAT ATGCAG.... .......... 612 GTTCTGTCAA GATATTGCAA GTTTTTATCT AGTATTTATA CTGAATGATT GGCATGCTGT 208711 .......... .......... .......... .......... .......... .......... 612 // intron part 208712 209071 (360 n) not shown // //........ .......... .......... .......... .......... ........// TTGGGTTCCA ACCAATAACT ATTGTTGTGC AACCTGAGCC TGAGAGCTCT TGTTGTATCA 209131 .......... .......... .......... .......... .......... .......... 612 TCTTTACCTC CTTAGTTGAT ATATCTGGCA AAGTTAGTTT CTTACAATCT GCTCTACAGT 209191 | .......... .......... .......... .......... .......... .........T 613 GTCAGGGATC TTTGCAGCCG TGCAGAGAAA AGCAAACCAT TATCACCAGT TTATAAGGTA 209251 |||||||||| || ||||||| || ||||||| |||||||||| |||||||||| ||||||| GTCAGGGATC TTCGCAGCCG TGTAGAGAAA AGCAAACCAT TATCACCAGT TTATAAG... 670 CTGTACAAGT AAGCATTTCA CGGCACTCCA TCATTTACCA GTGAATCTTA TTACATAGGT 209311 .......... .......... .......... .......... .......... .......... 670 // intron part 209312 210091 (780 n) not shown // //........ .......... .......... .......... .......... ........// TTGTTGCAAT ACTAGTTACC CTAGCTAAAG TTTAACATGT TTTCGGTATT AAGTAATTAT 210151 .......... .......... .......... .......... .......... .......... 670 GTCTTAAACT CATTGTCTTA TTAAAACAGG TCACAAAAAC TGTGTATGCA TCCCCAAGCC 210211 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TCACAAAAAC TGTGTATGCA TCCCCAAGCC 701 GTGTAAATTT TCATCTTGAT CGAAGAAAGG TACTTTTTCC TGGCATTTTC AGTCTCTCTT 210271 |||||||||| |||||||||| ||||||||| GTGTAAATTT TCATCTTGAT CGAAGAAAG. .......... .......... .......... 730 TTGAAAGAGA TGATGTTTCA GTAAAAATTC CTGTATCTTT GGACAGGCTG TGGAAACTGT 210331 |||| |||||||||| .......... .......... .......... .......... ......GCTG TGGAAACTGT 744 ACCTGCATAT CCCAATATTT GTTTCTCAGT TGATGACTTC GATGATACTT TTGATGCTGT 210391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGCATAT CCCAATATTT GTTTCTCAGT TGATGACTTC GATGATACTT TTGATGCTGT 804 TGTAAGTTCC CATTTCTCAG TATTCTAGCA TATTGTTCAT ATGGATGTAT CTATGATATT 210451 | T......... .......... .......... .......... .......... .......... 805 GCATCGCTTT TGTCATTATA GAATGAAAGT GACCATCTAA ATTTGAGCAG GTTTTGTCAG 210511 |||||||||| .......... .......... .......... .......... .......... GTTTTGTCAG 815 ACCCCGAACA TTGCTATTGT GTGATTCTCA ATGCACATGA TGGGGCAGCT TTTCCTGAAG 210571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCCGAACA TTGCTATTGT GTGATTCTCA ATGCACATGA TGGGGCAGCT TTTCCTGAAG 875 ACACTGAATC GAAGAATGCC AGCTCAAATC TACTAAACAC TGGGAGCAAC CAAGAAAAAC 210631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTGAATC GAAGAATGCC AGCTCAAATC TACTAAACAC TGGGAGCAAC CAAGAAAAAC 935 CACCAAAGGT CCTCTGCCCT CAAATCTACC AAAACTCTCT CTCTCTCAGA ATTCAGCACT 210691 |||||||| CACCAAAG.. .......... .......... .......... .......... .......... 943 TAGTAAATTC TCCGTGTGTC TCAAACTATA GGAGCATTCT GATTTTGTCC CAAATTATTT 210751 .......... .......... .......... .......... .......... .......... 943 // intron part 210752 211651 (900 n) not shown // //........ .......... .......... .......... .......... ........// CTTGCTTAAA ACATAGTTAC ACTTTAGCAG ATATCCGCTT CTGTAACACA ACTGTATGAA 211711 .......... .......... .......... .......... .......... .......... 943 GTATATCATA GTTCATTTCT CACCTACATT GCGCTTACTG TGATTATTGC AGAGAACACT 211771 |||||||| .......... .......... .......... .......... .......... ..AGAACACT 951 CTTCTCAGGC TACGTTAGCT ACCAAAATGT TCGAGAAGCC TACAATGGTG AGTCCATCCA 211831 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CTTCTCAGGC TACGTTAGCT ACCAAAATGT TCGAGAAGCC TACAATG... .......... 998 TCTATTTATC TCCAAGGAAA CTATTGTTCA GATGGTCTTA TAAAGTACTT ATGTCCTTTC 211891 .......... .......... .......... .......... .......... .......... 998 // intron part 211892 212071 (180 n) not shown // //........ .......... .......... .......... .......... ........// TAGGTACCTA CCATTTCATT CCTTCTAGGT TTACATTTCC TGATATGTAC TCTGTTATAG 212131 .......... .......... .......... .......... .......... .......... 998 CTGGCAGATC ACAATTTGGG AGCTTACTCT CACTCGGGCA TGACCAAACT AAACTTGATA 212191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCAGATC ACAATTTGGG AGCTTACTCT CACTCGGGCA TGACCAAACT AAACTTGATA 1058 AACTTTATAT GAGGGGCCCT GAAGGACGTG GGGAAGTTGA AGTAGCTGTT TCTGGAATTG 212251 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AACTTTATAT GAGGGGCCCT GAAGGGCGTG GGGAAGTTGA AGTAGCTGTT TCTGGAATTG 1118 CAGGTCAGTT ATGTTTAGCC TAAGTAGCGA TTTACTGCGT GGGTTGACTC TGGAATATGT 212311 ||| CAG....... .......... .......... .......... .......... .......... 1121 TTCACAAGCT TCAAGTTATC TCGCTGTTAC ATGCATTTAC TGTAATGAGT AGGATTTGGG 212371 .......... .......... .......... .......... .......... .......... 1121 // intron part 212372 212551 (180 n) not shown // //........ .......... .......... .......... .......... ........// ATGCACATTC ATGTCTTGGA TTACCGTAGC TGTGATGATG CAAGTTGTTG ATCCGTCAAA 212611 .......... .......... .......... .......... .......... .......... 1121 CTCTGACATG GAAATGATTG TCTTTTATTA GATCAGAGCC ATGAGAGATC AAAGAAAGAT 212671 ||||||||| |||||||||| |||||||||| .......... .......... .......... .ATCAGAGCC ATGAGAGATC AAAGAAAGAT 1150 CCAGGAGATA GCTTTCGAGT CTTTGTTCAT AGGGCAGCTT CTGCTGCATC AAAGCTGGCA 212731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGAGATA GCTTTCGAGT CTTTGTTCAT AGGGCAGCTT CTGCTGCATC AAAGCTGGCA 1210 AAGCATGCCT ACGAGGCTGC ATCTACCAAC AAACGATTTG ATCATGAGCT TCTGCCTCTG 212791 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCATGCCT ACGAGGCTGC ATCTACCAAC AAACGATTTG ATCATGAGCT TCTGCCTCTG 1270 AAATGTTGCT TGATGTCGGT ATCTCTTCCT TGGGACTACA TTGCACATGA CCTGCTACAC 212851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGTTGCT TGATGTCGGT ATCTCTTCCT TGGGACTACA TTGCACATGA CCTGCTACAC 1330 AAGGTGAAAA CCATCACTAC TTGCAAATGA TATGATTGTT TTGATGTCTA AAATTATTTT 212911 ||| AAG....... .......... .......... .......... .......... .......... 1333 TTTGAACTGA AATGTCTAAA ATTGTTGATA ACTATTTTCA TTTTCCTGCT TATTTTTTAG 212971 .......... .......... .......... .......... .......... .......... 1333 // intron part 212972 213211 (240 n) not shown // //........ .......... .......... .......... .......... ........// ATTGGCTGAA TAATAAGTGG GCTAGTTGCT TCTCAATTTT GAATGCAATC CACTTGACAG 213271 .......... .......... .......... .......... .......... .......... 1333 AATAGTTCAA GTTGAGTATA TCTAGCTTAC AATATGATCA CGCTATGTAA CAGGAAACCC 213331 ||||||| .......... .......... .......... .......... .......... ...GAAACCC 1340 CTCCGCTGGA CCTATGAGAG ACTGCGAATT CCCATTGTGC ACCAGAAAGA ATGATATATG 213391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGCTGGA CCTATGAGAG ACTGCGAATT CCCATTGTGC ACCAGAAAGA ATGATATATG 1400 TGCATGATTG TGGGAAAGTT TGTGTCCCTT GGGCTCGATA TAGTGTAAGA AAACAGTGAG 213451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATGATTG TGGGAAAGTT TGTGTCCCTT GGGCTCGATA TAGTGTAAGA AAACAGTGAG 1460 CAGAGAAGCA GTGCTGCGAT GTACATGTGT ACTTTAAACA GACTAAAACT TGTAGAATTT 213511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGAAGCA GTGCTGCGAT GTACATGTGT ACTTTAAACA GACTAAAACT TGTAGAATTT 1520 TCATGTGTGT TTGTACAATG TTGAAAGTAG GCGATGAAAT AATGTAAATA TATATTTTTT 213571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGTGTGT TTGTACAATG TTGAAAGTAG GCGATGAAAT AATGTAAATA TATATTTTTT 1580 TGGTTGTCAT GAGGAAGACT CTTCACTGTT GCT 213604 |||||||||| |||||||||| |||||||||| || TGGTTGTCAT GAGGAAGACT CTTCACTGTT GCC 1613