EST Sequence: file=LIBc9, strand=+, description=gi|32994990|dbj|AK109781.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C01, full insert sequence 1 GTCGGGTCCT CCCCCAACCT CCAGCCGCTC GCCGCCGCGC CCGCAACCGC CGCCGCACCT 61 CACGCCCGCG CCTCCCGGGC CATGTCGTCC ACGTCGCCCT CGCGCCCGCG CCTCCCGTGC 121 CCACTTCCCC CTCTCTCCCG CTCGCCCGCG CTCCCGAGAC GGCCGGGATT CGATTTTCGA 181 ATCCCGCCTC TCTCTCCTCT CCCACTCCCC CACTTCGGCC GGCGATTCCC GCCTCTCCCG 241 GCCACGTCCG GCCCCCTCTC TCCCTATTTA AGCTCCGCCG CCACCCCCTC TCTCTTTTTT 301 CCCATTTCGC CGAACTCTCT CGTGCTCCCC ATCGCTCCCG CGCCGTGCAC CCACCCGCCG 361 CCGCCTTTCC CGCCACTCCG GCCGCCTCTA GCCGCCGCTA GGCTCGCCGC CGCATCGCGC 421 CGTCGCCGCC GTCGGGTTCG CGTGGCCAAG GTCCACCCCG TCCGCCCCTC CTCCGTCGAG 481 GTTCGCCGCC GGAGCGCCAT TCCCGCCGTG CGCCGGTCGT CCCGGACCCC GTCCGCCGCT 541 TGTCGACCTC CCTCTGTCGC TCCTCGTCGC CGGTCGTCGC CGCCCCCTCC GATTCCGATT 601 CTTCCGACGC TCCGGTGTAC TTCGAGATAG TCGCCGAGGT TCCTCCAGCT GCAGAGCAAG 661 AATATGAGTG TGTGTCCGAT GGTGGTTTCT CCGAGGAGTA GGCTTCGTCC GTGCCATCGA 721 GGATGCCTGT GGAGTGGTGT TCCCGCTGCA GTTCAAGTCA AGGCTTAGCT CCTGTTATCT 781 TTCGTTTTTC CGCTGCATTT ATGTAAGACT TTTATGATGT TTGTAAGACG TGGATCTGAA 841 TGTCAACATT GTCGTTTGTA TACCCCGGCC GGTCCTGGAC GGGGATTTTA ATGCACATTC 901 TGCTTGGAAT TCTATTCGGG Genomic Template: file=OSchr10, strand=+, from=115539, to=118552, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 115772 116093 ( 322 n); cDNA 195 515 ( 321 n); score: 0.786 Intron 1 116094 116193 ( 100 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0.96) Exon 2 116194 116289 ( 96 n); cDNA 516 614 ( 99 n); score: 0.750 Intron 2 116290 117951 (1662 n); Pd: 0.914 (s: 0.52), Pa: 0.000 (s: 0.19) Exon 3 117952 118252 ( 301 n); cDNA 615 920 ( 306 n); score: 0.819 MATCH OSchr10-v3+ 32994990+ 0.795 719 0.782 C PGS_OSchr10-v3+_32994990+ (115772 116093,116194 116289,117952 118252) Alignment (genomic DNA sequence = upper lines): TCCACCTCCA CCTCCCCACG TCGGCCGGCG AAATCGAGCC ACTCCCCGCC -GTTCCCGAC 115830 ||| | ||| | |||||| |||||||||| | || ||| ||||| ||| ||| | | TCCTCTCCCA CTCCCCCACT TCGGCCGGCG -ATTCCCGCC TCTCCCGGCC ACGTCCGGCC 253 CTCTTCGGCC CTATATAATC CATCCCCGCA TCCTCCTC-C TCATTTTTCC TTTTTCCGCC 115889 | || || |||| ||| | | |||| || |||| | || ||||||| ||| |||| CCCTCTCTCC CTATTTAA-G CTCCGCCGCC ACCCCCTCTC TCTTTTTTCC CATTT-CGCC 311 GGCCTCTCCC GAGCTCTCCA TCGCTCCCGC ACCGTGCACC CACCCGCCAC CGCCTCTTTC 115949 | ||||| | | |||| ||| |||||||||| ||||||||| |||||||| | ||||| | | GAACTCTCTC GTGCTCCCCA TCGCTCCCGC GCCGTGCACC CACCCGCCGC CGCCTTTCCC 371 ACTACTCCGG CCGCCTCCAG CCACTGCTAG GGCCGCCGCT GCACCGCACC GCCGCCGCCG 116009 | ||||||| ||||||| || || | ||||| | |||||| ||| ||| || | |||||||| GCCACTCCGG CCGCCTCTAG CCGCCGCTAG GCTCGCCGCC GCATCGCGCC GTCGCCGCCG 431 TTGGGTTCGT GTGGCCGAGG TCCACCTCGT CTACCCCTCC TCCGTCGAGG TTCGCCGCCG 116069 | ||||||| |||||| ||| |||||| ||| | ||||||| |||||||||| |||||||||| TCGGGTTCGC GTGGCCAAGG TCCACCCCGT CCGCCCCTCC TCCGTCGAGG TTCGCCGCCG 491 GAGCCCCATC CCCGTCGTGC GCCGGTAAGA AACGCCACGG CCGCCGCCTT CGGCCGGCGT 116129 |||| |||| |||| ||||| |||| GAGCGCCATT CCCGCCGTGC GCCG...... .......... .......... .......... 515 TCCCGCTTTC TATGCTCTCT CTCTCTCTCT CTCTCCCTCT AATCCTCTCC ATTTCGTTCC 116189 .......... .......... .......... .......... .......... .......... 515 TTAGGTCGTC CCGGACCCCG TCCGCCGCTT GTCGACCTCC CTCCGTCGTT CCTCGTCGCC 116249 |||||| |||||||||| |||||||||| |||||||||| ||| |||| | |||||||||| ....GTCGTC CCGGACCCCG TCCGCCGCTT GTCGACCTCC CTCTGTCGCT CCTCGTCGCC 571 GGTCGCCGTC GTCTCCCTCC -ACGCCG-GT CGGAC--CCC TTCGGTGAGG ACGTCCCTCC 116305 ||||| || | | | |||||| | ||| | | | | | | || GGTCGTCGCC G-CCCCCTCC GATTCCGATT CTTCCGACGC TCCG...... .......... 614 TTCCCCTTCC TTCTTCCTCC TCTCTTTTCC CTGGTAGCGC CGCCGCCGTC TGCCGAATCA 116365 .......... .......... .......... .......... .......... .......... 614 // intron part 116366 117865 (1500 n) not shown // //........ .......... .......... .......... .......... ........// GCTTTATGCA AAAGAACCTC TCTAGCTATC CTTTGGTAAT ATCCTGCATC ATACCCCCTG 117925 .......... .......... .......... .......... .......... .......... 614 TTCCGGTATG ACTTACTGAG TACAATGGGC AGTAC-TCAG TCTTG-CTTT ATT-TTCC-- 117980 | | | | | | | | | || ||| .......... .......... ......GTGT ACTTCGAGAT AGTCGCCGAG GTTCCTCCAG 648 CCAAAACCCT AGAGTTTGAG TATGCGTCAG ATGGTGGCTT TTCCGAGGAG TAGGCTTCGT 118040 | | | ||| | |||| | || ||| | ||||||| || ||||||||| |||||||||| CTGCAGAGCA AGAATATGAG TGTGTGTCCG ATGGTGGTTT CTCCGAGGAG TAGGCTTCGT 708 CCGTGCCATC GAGGATGCCT GTGGAGTGGT GTTCCCGCTA CAGTTAAAGT CAAGGCTTAG 118100 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| CCGTGCCATC GAGGATGCCT GTGGAGTGGT GTTCCCGCTG CAGTTCAAGT CAAGGCTTAG 768 TTCCGGTTAT CTTTTATTTT TCCGCTGCAT TTATGTAAGA CTTTTATAAT ATTTGTACGA 118160 ||| ||||| |||| |||| |||||||||| |||||||||| ||||||| || |||||| || CTCCTGTTAT CTTTCGTTTT TCCGCTGCAT TTATGTAAGA CTTTTATGAT GTTTGTAAGA 828 CGTGGATCTG TATGTCAACT TTGTCGTTTG TGTACCCCGG CCGGTCCTGG AAGGGGATTT 118220 |||||||||| |||||||| |||||||||| | |||||||| |||||||||| | |||||||| CGTGGATCTG AATGTCAACA TTGTCGTTTG TATACCCCGG CCGGTCCTGG ACGGGGATTT 888 TAATGCACAT TCTGCTTGGA ATTCTATTCG GG 118252 |||||||||| |||||||||| |||||||||| || TAATGCACAT TCTGCTTGGA ATTCTATTCG GG 920