$ GenomeThreader 0.9.38 (2005-06-24 17:37:20) $ Date run: 2005-08-10 20:42:10 $ Splice Site Model: Bayesian $ $ genomicfile = "OSchr10" $ referencefile = "LIBc9" $ species = "rice" $ proteinsmap = "protein" $ scorematrix = "BLOSUM62" $ bssmfile = "rice" $ searchmode = (forward=True,reverse=True) $ frompos = 1 (non-df.) $ topos = 600000 (non-df.) $ width = 0 (default) $ verbose = False (default) $ gs2out = False (default) $ showintronmaxlen = 120 (default) maximum length of a fully shown intron $ minorflen = 64 (default) minimum length of an ORF to be shown $ minmatchlen = 45 (non-df.) minimum match length $ seedlength = 30 (non-df.) the seed length $ exdrop = 2 (default) the xdrop value for edit distance $ online = False (default) run the similarity filter online $ inverse = True (non-df.) invert query and index in vmatch call $ exact = False (default) use exact matches $ noautoindex = False (default) do not create indices automatically $ maskpolyatails = True (non-df.) mask poly(A) tails in cDNA/EST files $ maxnumofmatches = 0 (default) maximum number of matches $ matchnumdistri = False (default) show the distribution of matches $ chainlocal = 1 (default) local chains (according to L1-model). $ uselocalchaining = False (default) enable local chaining $ chainwf = 0.500000 (default) weight factor > 0.0 for local chaining $ gcmaxgapwidth = 50000 (non-df.) maximum gap width for global chains $ gcmincoverage = 15 (non-df.) minimum coverage of global chains $ introncutout = True (non-df.) enable the intron cutout technique $ autointroncutout = 0 (default) automatic intron cutout matrix size $ icinitialdelta = 50 (default) initial delta used for intron cutouts $ iciterations = 2 (default) number of intron cutout iterations $ icdeltaincrease = 50 (default) delta increase during every iteration $ icminremintronlen= 10 (default) minimum remaining intron length $ nou12intronmodel = False (default) disable the U12-type intron model $ u12donorprob = 0.990000 (default) probability for perfect U12-type donor $ u12donorprob1mism= 0.900000 (default) prob. for U12-type donor w. 1 mismatch $ probies = 0.500000 (default) initial exon state probability $ probdelgen = 0.030000 (default) genomic sequence deletion probability $ identityweight = 2.000000 (default) pairs of identical characters weight $ mismatchweight = -2.000000 (default) weight for mismatching characters $ undetcharweight = 0.000000 (default) weight for undetermined characters $ deletionweight = -5.000000 (non-df.) weight for deletions $ dpminexonlen = 5 (default) minimum exon length for the DP $ dpminintronlen = 50 (default) minimum intron length for the DP $ shortexonpenal = 100 (default) short exon penalty $ shortintronpenal = 100 (default) short intron penalty $ wzerotransition = 80 (default) zero transition weights window size $ wdecreasedoutput = 80 (default) decreased output weights window size $ leadcutoffsmode = RELAXED (default) cutoffs mode for leading bases $ termcutoffsmode = STRICT (default) cutoffs mode for terminal bases $ cutoffsminexonlen= 5 (default) cutoffs minimum exon length $ scoreminexonlen = 50 (default) score minimum exon length $ minaveragessp = 0.500000 (default) minimum average splice site prob. $ intermediate = False (default) stop after calc. of spliced alignments $ sortags = False (default) sort alternative gene structures $ sortagswf = 1.000000 (default) weight factor for the sorting of AGSs $ first = 0 (default) maximum number of spliced alignments $ $ special output characters for starting lines: $ GTHINFOCHAR = $ (info line) $ VMATCHCHAR = # (mkvtree and vmatch output) $ $ the specified BSSM parameter file contains the following models: $ GT donor sites = True $ GC donor sites = True $ AG acceptor sites= True $ ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|37989741|dbj|AK120118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025N10, full insert sequence 1 TGTTTGCCCC ATCTCCCGAG CTCTCTCGTC GCCCGTAGAG CCGCCGCCGC TAGCATCGTC 61 GCCGCTGCCG TCCGTCGCCG CCGTCGGGTG CGCACGGAGG AGAGGAACCC CGTCCGCCCC 121 TTCGCAGCCG CCGAAGACCA CCGGAGCACC ATCGCCGCCG TCAAGCCGAA CCGTGCCGCC 181 ATTGAACCTC GTCGCCGGCC GTCGTTCGTC GTTGTCCGTC GTTGTTCTTT GCACCGGTGA 241 GTTCGCGTCG TCGTCCTCTA CGCGTAGGTG TCCTCGGATA GCCCAACCGA GCCCTCTTTT 301 GCCGGTGGTC GTGTCAACTG TGCCATGGCC GGCGATGATG ACGTCAGCGA TGACGTCATA 361 AATCCCTTTT TCTAGGTTTT CTTTATTAGA TGAAAATCGA TTAAACTTCA TAAATTCATA 421 ACTAAATCAT CGTAACTCGG ATTTGAGTGG TTCAAGTTGC TAATTCATCT AAAATCGAGA 481 TCTTCAGTTA AAAATATCCA CATGTACTAT TTATGCTTGT TTTTGTACTG TTTTGTTGAT 541 TTTGTTCTTT TGCTTTAGTT TCCGACATTT CGGAGGAGAG CGTTTTCGTT GAGGAAGGTT 601 CGGAAGCGTT TGGGGAAGCT CAAGGCAAGT CACACAGATC CTAAACACAA TCCTTTGAGC 661 ATGTTGATCC TATATTTAAA TTCTCTATTT ATTTCAACTG TTTATTAATT TTCGAATGTC 721 ACCGGGTGGT GTGAACCTAT TCCTTTGTTA TGGCCAATTT GCATTGAATG CCCTATTCCT 781 TGATACCTTG GGTAATAAAT TGACTAGCTT GAACCTTGAA CCTTATGTAT TGGTTTGGTT 841 CAGCTAAGTG TTATATATAT AATTGCTTAG CCATGCTTAG AAACATTAGC TCACTAATGG 901 GATGAATCAT ATATACTACA TTATTATTTA TGGTTATATT TAATGATAGC TCACGATGGT 961 TAATCGTGTT ATGATAATTA ATTAGTAATT AAAATATGAT TAATGGTGGG TTGTGAGCAC 1021 ATGGTTTTGA AGGTCGTGCT CATGACAATT AAAGACCGGT TCGCGAGCTA CTGTTGTGAA 1081 ACATTAACCG TACCAACCAC AAGCCAACGT GGGCAACGGC TTTACCTTTT GTATAGCATT 1141 GTTCATTACG GGGTGCCAGA CGGAGAAGCG GTGAGAAGTC CGTGGGGATC GCTGGGGAGT 1201 CCATGCCTCT GGTTATATTT ATAGAGAGGG TGATTATGAT CCAGGAATGG TGCACTGTGG 1261 TGAGTTGTGT TGTGCAGGGG GTATTGTCAC AGCCTCTATT CGGGTACTTT CTAGTATCGC 1321 AACGCATGGT AGACATGATG TTGAGGCTGT GTCTTGTGGG TACAGTGGTA CACCTCTGGC 1381 CAGAGTAAAA CTATTCGAAT AGCCGTGCCA GCGGTTATGA GCGAGTTGAG CAATGTTTTT 1441 CGTGATTAGT CTCACACCTC TCACAAATAA TTATTGATGC AATAACTGGT AATAATTTGT 1501 TTAGCTCCTG GTTTGGAGTT AGATCTGTAC AGCCGGGTAT GGTTGTTCGG GATGGTTGGG 1561 CCTGAGCAGC ATGGGTGTGC TGTTCAGTGT TGATTAAAAT TTCTGATTAA TTACTCTACT 1621 GTTTTACTTT TAAATCTTTG TAAATGCTGC TTTTGCAAAT GAGCCTATAT TATGCCATCC 1681 TTTGGTATCC TTGTGCACTT GCATATTTGC TGTGTGGCTT ATTGAGTATG TCATATGCTC 1741 ACCTTGCAAT AATCAATCAA CCTCAGTTGA AGAGAAAGGA TCCAGGAGTA GACGTTTGGC 1801 TTATACCCCA GTTGAGCTGC CTGTGGGAGT GGAGCTGAAG CCATCGCTAG ACCGTTAATT 1861 CCGCTGCTGT TTTTCTTTTC TTTTGTAAGT ATGTAACGTT ATTATTATGG TGGATTTGTA 1921 TATTAAATTG TCAGTTTGTG TACCTCGGCT GATTCCTGGA CGAGGATTTT ATGTATAAAT 1981 TAGTTTGGAA ATTACTAGTA AATTTCCGGG CGTGACAACG CCGGTGC Genomic Template: file=OSchr10, strand=-, from=5826, to=3819, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 5760 4118 (1643 n); cDNA 400 2018 (1619 n); score: 0.793 MATCH OSchr10-v3- 37989741+ 0.793 1643 0.818 G PGS_OSchr10-v3-_37989741+ (5760 4118) Alignment (genomic DNA sequence = upper lines): ATTTAATCTT GTAAAATTCA TAATAAATTC ATTTGAAGTC AGAATGAGGC CGTTCAAGTC 5701 ||| || ||| ||||||| ||| || || || || || || | | |||||||| ATTAAA-CTT CATAAATTCA TAACTAAATC ATCGTAACTC GGATTTGAGT GGTTCAAGT- 457 TCATAATTCA TCTAAAATTA TAATCTACAT GTTTGTTTAC TTTTTATGTA TTGTTTAT-T 5642 | ||||||| |||||||| |||| || ||| | ||||| | ||||| TGCTAATTCA TCTAAAATCG AGATCTTCA- GTTAAAAATA TCCACATGTA CTATTTATGC 516 TGGTTTTTAT TAGTCTTTTT CCTCGTTTTG CGTGATAGCT TGTCGTTTCC GTCGTTGCGA 5582 | |||||| || | |||| | ||||| | ||| | | |||||| | | || || TTGTTTTT-G TACT-GTTTT GTTGATTTTG TTCTTTTGCT T-TAGTTTCC GACATTTCGG 573 AGGTTCGCGA GTGCGCCG-G AAGTATTCAA GAAGATTAAT TGAAGACCGA TTATTGCAAG 5523 ||| ||| | || | | | ||| |||| | | || | || | |||| AGGAGAGCGT TTTCGTTGAG GAAGGTTC-G GAAGCGT--T TG--G--GGA --AGCTCAAG 624 GCAAGTCACA CAGATCCTAA ACACAATCCT TTGAGCATGT TGATCCTATA TTTAAATTCT 5463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGTCACA CAGATCCTAA ACACAATCCT TTGAGCATGT TGATCCTATA TTTAAATTCT 684 CTATTTATTT CAACTGTGCA TTTATTTTCA AATGTCACCG GGTGGTGTGA ACTTATTCCT 5403 |||||||||| ||||||| | || |||||| |||||||||| |||||||||| || ||||||| CTATTTATTT CAACTGTTTA TTAATTTTCG AATGTCACCG GGTGGTGTGA ACCTATTCCT 744 TTGTTATGGC CAATTTGCAT TGATTACTTT ATTCCTTGAT ACCTTGGGT- -T--ATT-A- 5349 |||||||||| |||||||||| ||| | | | |||||||||| ||||||||| | ||| | TTGTTATGGC CAATTTGCAT TGAATGCCCT ATTCCTTGAT ACCTTGGGTA ATAAATTGAC 804 TAACTTGACT AGTTGAGCTT -TATA-T--A TTGGTTCAGC T-AG-ATATT AGATATGATT 5295 || ||||| | | ||| | || | |||||||||| | || | | | |||| ||| TAGCTTGAAC CTTGAACCTT ATGTATTGGT TTGGTTCAGC TAAGTGTTAT ATATATAATT 864 GCTTAGCCAT GCTTAGAAAC ATTAGCACAT TATTGGGAT- AA-CTTAT-G ACT-CATTAT 5239 |||||||||| |||||||||| |||||| || || |||||| || | ||| ||| |||||| GCTTAGCCAT GCTTAGAAAC ATTAGCTCAC TAATGGGATG AATCATATAT ACTACATTAT 924 TATTTAATGA T-GGCTTAAT GATAGTTCAC GATGGTCAAT CGTGATTGGT TAATTAATTA 5180 |||||| | | ||||| ||||| |||| |||||| ||| |||| | | |||||||||| TATTTATGGT TATATTTAAT GATAGCTCAC GATGGTTAAT CGTGTTATGA TAATTAATTA 984 CTTGCCAACT AAAACTTGA- TAATGGTGGG TTGTGAGCAC ATGGTTTTGA GAGTCGTGCT 5121 | || | |||| ||| |||||||||| |||||||||| |||||||||| |||||||| ---G-TAATT AAAATATGAT TAATGGTGGG TTGTGAGCAC ATGGTTTTGA AGGTCGTGCT 1040 CATGACAATT AAGGACCGGT TCGCGAGCTA CTATTGTGAA ACATTAATCG TGCCAACCAC 5061 |||||||||| || ||||||| |||||||||| || ||||||| ||||||| || | |||||||| CATGACAATT AAAGACCGGT TCGCGAGCTA CTGTTGTGAA ACATTAACCG TACCAACCAC 1100 AAGCCAGCGT GGGCAACGGC TTTACATTTC GTATAGCATG GTTCATTGCA GAGCACCAGA 5001 |||||| ||| |||||||||| ||||| ||| ||||||||| ||||||| | | | ||||| AAGCCAACGT GGGCAACGGC TTTACCTTTT GTATAGCATT GTTCATTACG GGGTGCCAGA 1160 CTGAGAAGTG GCGGAGATAA GCCCACGGGG GTCGCTGGGG AGTCCATGCC TCTGG---T- 4945 | ||||| |||| || || | || |||| ||||||||| |||||||||| ||||| | CGGAGAA--- GCGGTGAGAA GTCCGTGGGG ATCGCTGGGG AGTCCATGCC TCTGGTTATA 1217 TTT-T-GAGG GGGTGATTAT GATCCAGGAA AGGTGCACTG TGGTGGGTTG TGTTATGCGA 4887 ||| | ||| |||||||||| |||||||||| ||||||||| ||||| |||| |||| ||| TTTATAGAGA GGGTGATTAT GATCCAGGAA TGGTGCACTG TGGTGAGTTG TGTTGTGCAG 1277 GGGGTACTGT CACAGCTCCT TTCCGAGGTA CCGTGGTGGT ATTGAGGCGC ATGGT-GACA 4828 |||||| ||| |||||| || | || |||| | | | || || | ||| ||||| |||| GGGGTATTGT CACAGCCTCT ATTCG-GGTA -CTTTCTAGT ATCGCAACGC ATGGTAGACA 1335 TG-TCGTGGG GCTGTGTCTT GTGGGTACAG TGGTACACCT CTGGCCAGAG TAAAACTATT 4769 || | || | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGTTGAG GCTGTGTCTT GTGGGTACAG TGGTACACCT CTGGCCAGAG TAAAACTATT 1395 CGGATAGCTG TGCCCGCGGT TATGGGCGGG TTGAGCAATG TTTTTCGTGA TTAGTCTCAC 4709 || ||||| | |||| ||||| |||| ||| | |||||||||| |||||||||| |||||||||| CGAATAGCCG TGCCAGCGGT TATGAGCGAG TTGAGCAATG TTTTTCGTGA TTAGTCTCAC 1455 ACCTCTCAC- AATAATTATT GATGTTATGA CTGGTAATAA TTTGCTTAGC TCCTGGTTTG 4650 ||||||||| |||||||||| |||| || | |||||||||| |||| ||||| |||||||||| ACCTCTCACA AATAATTATT GATGCAATAA CTGGTAATAA TTTGTTTAGC TCCTGGTTTG 1515 GAGATTAGAT CTGTACAGCC GGGTATGGTT GTTCAGGATG GTCGGGCCTG TGCAGCATGG 4590 ||| |||||| |||||||||| |||||||||| |||| ||||| || ||||||| ||||||||| GAG-TTAGAT CTGTACAGCC GGGTATGGTT GTTCGGGATG GTTGGGCCTG AGCAGCATGG 1574 GTGTGCTGTT CAGTGTTGAT TAAAATTTCT GATTAACTAC TCTACTGTTT TATTTCTCTT 4530 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| || || || GTGTGCTGTT CAGTGTTGAT TAAAATTTCT GATTAATTAC TCTACTGTTT TA---CTTTT 1631 AAATATTTTG CTAAACGCTG CTTTTGCAAA TGAGCCTATA TTATGCCATC CTTTGGTATC 4470 |||| |||| |||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AAAT-CTTTG -TAAATGCTG CTTTTGCAAA TGAGCCTATA TTATGCCATC CTTTGGTATC 1689 CTTGTGCACT TGCATATTTG CTATGTGGCT TGCTGAGTAT GTCATATGCT CACCTTGCAA 4410 |||||||||| |||||||||| || ||||||| | ||||||| |||||||||| |||||||||| CTTGTGCACT TGCATATTTG CTGTGTGGCT TATTGAGTAT GTCATATGCT CACCTTGCAA 1749 TAATCAATCA ACCTCAGTTG AAGAAAAAGG ATCCAGAAGG AGAAGACGTT TGGCTTATAC 4350 |||||||||| |||||||||| |||| ||||| |||| ||| || ||||||| |||||||||| TAATCAATCA ACCTCAGTTG AAGAGAAAGG ATCC---AGG AGTAGACGTT TGGCTTATAC 1806 CCCAGTTGAG CTGCCTGTGG GAGTGGAGCT GGAG-CTTCG CTAGATTTTA TTTTCCGCTG 4291 |||||||||| |||||||||| |||||||||| | || | ||| ||||| | |||||||| CCCAGTTGAG CTGCCTGTGG GAGTGGAGCT GAAGCCATCG CTAGACCGTT AATTCCGCTG 1866 CAATTTTCTT CTTGGTGAGG ACTAAGTGCC TCTTAAGTAA GTATTTATTG TTTTAGTTAA 4231 | | || || | | | | | | | || |||| |||| || | ||| ||| C--TGTTTTT C-T--T---- --T---T--C T-TT-TGTAA GTATGTAACG --TTA-TTAT 1905 TTTGATGAAT CTGTATATTA AATTGTCAGT TTGTGTACCT CGGCTGATTC CTGGACGAGG 4171 | || || || ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGTGGAT TTGTATATTA AATTGTCAGT TTGTGTACCT CGGCTGATTC CTGGACGAGG 1965 ATTTTATGCA CAAATAAGTT CGGAAATTAC TAGTAAATTT CCGGGCGTGA CAT 4118 |||||||| | |||| |||| ||||||||| |||||||||| |||||||||| || ATTTTATGTA TAAATTAGTT TGGAAATTAC TAGTAAATTT CCGGGCGTGA CAA 2018 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32992317|dbj|AK107108.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-123-A01, full insert sequence 1 AGGAGCACGG GGAGGAGCAC TGCTATGGCA GGTGAAGACG GTGCCCGCCC CGCCGCTCGC 61 CGCAGCCTGC CATAGCATCA TCCTCTGGCC GCCCTGCCGC CGCAGCCGCC GGCCTCCGCT 121 CGCTACAGCC CGCCGCCTCC GCTCACCGCA GCCGTTACCC CGCCTCCGCC CGCCCCGCCA 181 CTCGCTGCAA CCTGTCACCT CGCAGCCTGA CGACGGTGTC GAGGTGGGAG AAGGGAGACA 241 AGGCGGCGTG AAGGGAGTGG TGGCGCTAGC GAGATAGGAA ATGAGGCGGC AGTGGGGCCG 301 GCTTCCCCTT TCGCCGTCGC CGTAGTCTTC GTCATCCCTC GCCGTCGCCG TCGACTCGCA 361 TGTGCACGGA TTTGCCGCCG CCTGCTTCTC CCCTTTCATC GTCGTCGTCT ACTTGCTGCA 421 CGAGCCCACC TCGCGCACAC GGATTTCTCC CACCCCCTTC CCCCTTGCCG CCTCCGATGC 481 CTTTGCCTCG CGTGCGCACA GTTCCACCTT CGCCGTCGCC GAAGAGGCGC TCGGTGATAC 541 CTGCGGGAGA AAGAGGAAGG AGGGGAGAGG AGGAAGAAGA AGCAGCGACT GACATGTGGG 601 GACCCACTGT GATAGACTTA AAATAGAGTG GGTAGATGGA GAGGCTGTTG GAGCGAGTAA 661 GTAGTTTGAC TAGCCAAATA AGATGGAGAG TTGGCTATAT GGGTGTTTGG AGAGTCCGAT 721 TTGGAGAGGC TATTGGAGAT GCTCTTATAA CTGATGAGAA TTAATTACAG AATGATAAAG 781 GTTTAGTTGT C Genomic Template: file=OSchr10, strand=+, from=23634, to=25024, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 23934 24724 ( 791 n); cDNA 1 791 ( 791 n); score: 1.000 MATCH OSchr10-v3+ 32992317+ 1.000 791 1.000 C PGS_OSchr10-v3+_32992317+ (23934 24724) Alignment (genomic DNA sequence = upper lines): AGGAGCACGG GGAGGAGCAC TGCTATGGCA GGTGAAGACG GTGCCCGCCC CGCCGCTCGC 23993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGCACGG GGAGGAGCAC TGCTATGGCA GGTGAAGACG GTGCCCGCCC CGCCGCTCGC 60 CGCAGCCTGC CATAGCATCA TCCTCTGGCC GCCCTGCCGC CGCAGCCGCC GGCCTCCGCT 24053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCAGCCTGC CATAGCATCA TCCTCTGGCC GCCCTGCCGC CGCAGCCGCC GGCCTCCGCT 120 CGCTACAGCC CGCCGCCTCC GCTCACCGCA GCCGTTACCC CGCCTCCGCC CGCCCCGCCA 24113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTACAGCC CGCCGCCTCC GCTCACCGCA GCCGTTACCC CGCCTCCGCC CGCCCCGCCA 180 CTCGCTGCAA CCTGTCACCT CGCAGCCTGA CGACGGTGTC GAGGTGGGAG AAGGGAGACA 24173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGCTGCAA CCTGTCACCT CGCAGCCTGA CGACGGTGTC GAGGTGGGAG AAGGGAGACA 240 AGGCGGCGTG AAGGGAGTGG TGGCGCTAGC GAGATAGGAA ATGAGGCGGC AGTGGGGCCG 24233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCGGCGTG AAGGGAGTGG TGGCGCTAGC GAGATAGGAA ATGAGGCGGC AGTGGGGCCG 300 GCTTCCCCTT TCGCCGTCGC CGTAGTCTTC GTCATCCCTC GCCGTCGCCG TCGACTCGCA 24293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCCCCTT TCGCCGTCGC CGTAGTCTTC GTCATCCCTC GCCGTCGCCG TCGACTCGCA 360 TGTGCACGGA TTTGCCGCCG CCTGCTTCTC CCCTTTCATC GTCGTCGTCT ACTTGCTGCA 24353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCACGGA TTTGCCGCCG CCTGCTTCTC CCCTTTCATC GTCGTCGTCT ACTTGCTGCA 420 CGAGCCCACC TCGCGCACAC GGATTTCTCC CACCCCCTTC CCCCTTGCCG CCTCCGATGC 24413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGCCCACC TCGCGCACAC GGATTTCTCC CACCCCCTTC CCCCTTGCCG CCTCCGATGC 480 CTTTGCCTCG CGTGCGCACA GTTCCACCTT CGCCGTCGCC GAAGAGGCGC TCGGTGATAC 24473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGCCTCG CGTGCGCACA GTTCCACCTT CGCCGTCGCC GAAGAGGCGC TCGGTGATAC 540 CTGCGGGAGA AAGAGGAAGG AGGGGAGAGG AGGAAGAAGA AGCAGCGACT GACATGTGGG 24533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCGGGAGA AAGAGGAAGG AGGGGAGAGG AGGAAGAAGA AGCAGCGACT GACATGTGGG 600 GACCCACTGT GATAGACTTA AAATAGAGTG GGTAGATGGA GAGGCTGTTG GAGCGAGTAA 24593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCCACTGT GATAGACTTA AAATAGAGTG GGTAGATGGA GAGGCTGTTG GAGCGAGTAA 660 GTAGTTTGAC TAGCCAAATA AGATGGAGAG TTGGCTATAT GGGTGTTTGG AGAGTCCGAT 24653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTGAC TAGCCAAATA AGATGGAGAG TTGGCTATAT GGGTGTTTGG AGAGTCCGAT 720 TTGGAGAGGC TATTGGAGAT GCTCTTATAA CTGATGAGAA TTAATTACAG AATGATAAAG 24713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAGAGGC TATTGGAGAT GCTCTTATAA CTGATGAGAA TTAATTACAG AATGATAAAG 780 GTTTAGTTGT C 24724 |||||||||| | GTTTAGTTGT C 791 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32975128|dbj|AK065110.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O01, full insert sequence 1 GGGGGCTGAG GGCTGACTAA TCATGGAGCA AGCAGCGAAG GCCACCATCT CACTGTCGCC 61 GCCGAGTTAC GCTGGATGTT GCATGGCAGC ATGTCCCTAC CGATCAACGC GGCACCTGCG 121 CAGAGGAGGC GGCTGCTCTG CTCGCTCCAT CTCCTCCCTC CGGCATGCCC CTTCTGCTCG 181 TGTTTACGCC GCAGCCGCAG CCGCAGCCAC GCCGGAGTCC AAGTCGACGA AAGAGAATGA 241 CCTCGTCTTC ATCGCGGGAG CCACCGGAAA GGTGGGATCC CGAGCTGTAA GGGAGTTCAT 301 CAAGCTTGGC TTCCGTGTCC GCGCCGGCGT TAGAAGTGCA CAGAGAGCGT CGTCCCTTGT 361 GCAGAGTGTT GAGCAACTGA AAGTCGATGA CGATGCAACT TCGCCCGCAG AAAGGCTCGA 421 GATCGTAGAA TGCGACCTGG AGAAGCAGGC GCAGTCAGAC ATCGTGTCGG CCATTGGCAA 481 CGCGGCGATT GTGGTGTGCT CCATCGGCGC CAGCGAGAAG GACATCCTGG ATGTAACGGG 541 CCCCTACCGT ATCGACTACA TGGCCACCAA CAACCTCGTG CAGGCTGCAA CTGCTGCAAA 601 GGTTGAGCAC TTCATCCTGG TTACATCCCT GGGCACAAAC AGGATTGGCT TCCCTGCTTT 661 TCTTCTCAAC TTGTTTTGGG GGGTTCTGTG CTGGAAAAGG CGAGCTGAAG AAGCGCTCAT 721 CGGCAGCGGC CTTCCTTACA CGATCGTCCG ACCTGGTGGC ATGGAGAGGC CAACGGACGC 781 TTTCAAGGAG ACGCACAACC TGGTGGTGGC AGTTGAGGAC ACCTACGTCG GTGGACTCGT 841 TTCCAACCTT CAGGTGGCGG AGCTCATCGC GTGCATCGCC AGCAACAGGA GAACGGCCTA 901 CTGCAAGGTG GTCGAAGCGA TCGCAGAGAC CACCGCGCCA TTGCTGCCCA CGGAGGATCA 961 GCTCGCCAAC ATACCTTCAA AGCGGCAACC TCCGCCCGAA CCTGAGGTAG TTCAGCAGGG 1021 AGAGACCCCT CCAAAACCGA TCCAGCAAAG CCAACGACCA CTCTCACCCT ACACGGCATT 1081 TGTGGACCTG AAGCCTCCAA GCTCGCCATC GCCGTGCCCA CCATCAGCAG CAGCTCCTGC 1141 TCCTACTTCT ACAGATACCG CTGCGGCAGG TTCATCGTCA ACGTTGAACT CCAGCGCCAC 1201 CGGCACCCCC ATCAGCGTGG ATCAACCGAA GCAGCAGCAG AGGCCTCTTT CACCGTACAC 1261 TAGATATGAG GAGCTGAAGC CACCCAGCTC GCCGTCACCG ACGCCGCCAT CAGCAGCTTC 1321 ATCGGCTTCT GTTTCTGCTT CTCCTGATAC ACCTCCTGCA GCAGCAGCTT CATCGGCGGC 1381 GTTGGACTCC AGCGCCAACG GCACTCCCAT CACCGGCGAT CAACTGAATC AGCAGCAGAG 1441 TCCTCTTTCA CCATACACAA GGTACGAGGA ACTCAAGCCT CCAAGCTCGC CAACCCCATC 1501 TACCCCCAAA CTATAGAAGC AAGATAGTTA GCATATAAGG CTATATTCGT TTTTTGCCTT 1561 GGCCAATCAT CACTCAAGAT CCAGTTATCC ACTACTAGTT AATTACCTTC ATCCAGGAAA 1621 AGCGACTTGT ATTTTTCATG TCCAAATTCA AAAAAAACAA AGAGTAGTAT TGGAATTGGA 1681 AGTCAACAAA TTAATTCTCT CT Genomic Template: file=OSchr10, strand=-, from=37610, to=24763, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 37310 37020 ( 291 n); cDNA 1 291 ( 291 n); score: 0.997 Intron 1 37019 36885 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.674 (s: 1.00) Exon 2 36884 36812 ( 73 n); cDNA 292 364 ( 73 n); score: 0.986 Intron 2 36811 36701 ( 111 n); Pd: 0.998 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 3 36700 36661 ( 40 n); cDNA 365 404 ( 40 n); score: 1.000 Intron 3 36660 36579 ( 82 n); Pd: 0.783 (s: 1.00), Pa: 0.397 (s: 1.00) Exon 4 36578 36396 ( 183 n); cDNA 405 587 ( 183 n); score: 1.000 Intron 4 36395 36264 ( 132 n); Pd: 1.000 (s: 1.00), Pa: 0.702 (s: 1.00) Exon 5 36263 36182 ( 82 n); cDNA 588 669 ( 82 n); score: 1.000 Intron 5 36181 36002 ( 180 n); Pd: 0.995 (s: 1.00), Pa: 0.629 (s: 1.00) Exon 6 36001 35929 ( 73 n); cDNA 670 742 ( 73 n); score: 1.000 Intron 6 35928 35047 ( 882 n); Pd: 0.986 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 7 35046 34804 ( 243 n); cDNA 743 985 ( 243 n); score: 1.000 Intron 7 34803 34233 ( 571 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 8 34232 34141 ( 92 n); cDNA 986 1077 ( 92 n); score: 1.000 Intron 8 34140 25899 (8242 n); Pd: 0.997 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 9 25898 25713 ( 186 n); cDNA 1078 1263 ( 186 n); score: 1.000 Intron 9 25712 25586 ( 127 n); Pd: 0.998 (s: 1.00), Pa: 0.399 (s: 1.00) Exon 10 25585 25388 ( 198 n); cDNA 1264 1461 ( 198 n); score: 1.000 Intron 10 25387 25304 ( 84 n); Pd: 1.000 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 11 25303 25063 ( 241 n); cDNA 1462 1702 ( 241 n); score: 1.000 MATCH OSchr10-v3- 32975128+ 0.999 1662 0.976 C PGS_OSchr10-v3-_32975128+ (37310 37020,36884 36812,36700 36661,36578 36396,36263 36182,36001 35929,35046 34804,34232 34141,25898 25713,25585 25388,25303 25063) Alignment (genomic DNA sequence = upper lines): GCGGGCTGAG GGCTGACTAA TCATGGAGCA AGCAGCGAAG GCCACCATCT CACTGTCGCC 37251 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGGCTGAG GGCTGACTAA TCATGGAGCA AGCAGCGAAG GCCACCATCT CACTGTCGCC 60 GCCGAGTTAC GCTGGATGTT GCATGGCAGC ATGTCCCTAC CGATCAACGC GGCACCTGCG 37191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGAGTTAC GCTGGATGTT GCATGGCAGC ATGTCCCTAC CGATCAACGC GGCACCTGCG 120 CAGAGGAGGC GGCTGCTCTG CTCGCTCCAT CTCCTCCCTC CGGCATGCCC CTTCTGCTCG 37131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGGAGGC GGCTGCTCTG CTCGCTCCAT CTCCTCCCTC CGGCATGCCC CTTCTGCTCG 180 TGTTTACGCC GCAGCCGCAG CCGCAGCCAC GCCGGAGTCC AAGTCGACGA AAGAGAATGA 37071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTACGCC GCAGCCGCAG CCGCAGCCAC GCCGGAGTCC AAGTCGACGA AAGAGAATGA 240 CCTCGTCTTC ATCGCGGGAG CCACCGGAAA GGTGGGATCC CGAGCTGTAA GGTACACCTC 37011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CCTCGTCTTC ATCGCGGGAG CCACCGGAAA GGTGGGATCC CGAGCTGTAA G......... 291 CTCCTCCTCG ATCCGTTCGT CCTCCAGGCC GGCTAGCCAG TCATCCCTCG ATCGATCTGT 36951 .......... .......... .......... .......... .......... .......... 291 CCCTGGAAAA ATATACTCCA GTATGTTAAT TACTGCAGAG ACACGTACGC TTGTATGCGC 36891 .......... .......... .......... .......... .......... .......... 291 TTGCAGGGAG TTCATCAAGC TTGGCTTCCG TGTCCGCGCC GGCGTTAGAA GTGCACAGAG 36831 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GGAG TTCATCAAGC TTGGCTTCCG TGTCCGCGCC GGCGTTAGAA GTGCACAGAG 345 AGCATCGTCC CTTGTGCAGG TAACAATAAT CCATGAATCT TGCTACCAGC TACACCTATG 36771 ||| |||||| ||||||||| AGCGTCGTCC CTTGTGCAG. .......... .......... .......... .......... 364 TAAATGTTGG AGTACAGTAC TTTTCATTTA TACATCTTGA CCATACATAC GATCGACATT 36711 .......... .......... .......... .......... .......... .......... 364 TCAATTTCAG AGTGTTGAGC AACTGAAAGT CGATGACGAT GCAACTTCGC GTGAGTCGTC 36651 |||||||||| |||||||||| |||||||||| |||||||||| .......... AGTGTTGAGC AACTGAAAGT CGATGACGAT GCAACTTCGC .......... 404 GGCATAGATA TATTAATTCG AGTTTCCGGT TAACTGTTTG TGTCTGAACT GGATCAATAA 36591 .......... .......... .......... .......... .......... .......... 404 TCTCTAGACC AGCCGCAGAA AGGCTCGAGA TCGTAGAATG CGACCTGGAG AAGCAGGCGC 36531 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..CCGCAGAA AGGCTCGAGA TCGTAGAATG CGACCTGGAG AAGCAGGCGC 452 AGTCAGACAT CGTGTCGGCC ATTGGCAACG CGGCGATTGT GGTGTGCTCC ATCGGCGCCA 36471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCAGACAT CGTGTCGGCC ATTGGCAACG CGGCGATTGT GGTGTGCTCC ATCGGCGCCA 512 GCGAGAAGGA CATCCTGGAT GTAACGGGCC CCTACCGTAT CGACTACATG GCCACCAACA 36411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGAAGGA CATCCTGGAT GTAACGGGCC CCTACCGTAT CGACTACATG GCCACCAACA 572 ACCTCGTGCA GGCTGGTATG TATATATAAT ATACTCTAGC TAGCTTAATT AGCTTTAATT 36351 |||||||||| ||||| ACCTCGTGCA GGCTG..... .......... .......... .......... .......... 587 TGTTCATCAT TAATATTACT CTATAAGCAG AAACAATTAA TAATTGAAAC TCATTAACTA 36291 .......... .......... .......... .......... .......... .......... 587 CGTACATCAT TGACGTACGT GCGCCAGCAA CTGCTGCAAA GGTTGAGCAC TTCATCCTGG 36231 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......CAA CTGCTGCAAA GGTTGAGCAC TTCATCCTGG 620 TTACATCCCT GGGCACAAAC AGGATTGGCT TCCCTGCTTT TCTTCTCAAG TAAGCTAGAT 36171 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTACATCCCT GGGCACAAAC AGGATTGGCT TCCCTGCTTT TCTTCTCAA. .......... 669 CGATGTGTAA TTAATTAATT TCCTTGTTCG ATATAATTAT TGGCCCTGTT TTAGTTTGAG 36111 .......... .......... .......... .......... .......... .......... 669 GAAGAAAAAA AGAGATCGAT ATGTATGCAT ATATATGTAG ACAGCCCAGC CCTTTAGGAC 36051 .......... .......... .......... .......... .......... .......... 669 GTACAAAAAC GAAATGAAAT TTATGATGCA TATGCACGCA TGGTTACAGC TTGTTTTGGG 35991 | |||||||||| .......... .......... .......... .......... .........C TTGTTTTGGG 680 GGGTTCTGTG CTGGAAAAGG CGAGCTGAAG AAGCGCTCAT CGGCAGCGGC CTTCCTTACA 35931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTTCTGTG CTGGAAAAGG CGAGCTGAAG AAGCGCTCAT CGGCAGCGGC CTTCCTTACA 740 CGGTACGCTT TCTTTAAGAT AATAAAAATG GTTTGCATCT TCAGCTTCTA CCAATGAGTT 35871 || CG........ .......... .......... .......... .......... .......... 742 TAGGTGTATT GTCAGGTATA TATACACTAT ATATATGCAA TTAATTAATG GGTTAATTAG 35811 .......... .......... .......... .......... .......... .......... 742 // intron part 35810 35151 (660 n) not shown // //........ .......... .......... .......... .......... ........// CTTAATGGCA TCGTTACAAA TATGTAAATA TTAATGGTAT ATTTTAAAAC CAGTAAAATT 35091 .......... .......... .......... .......... .......... .......... 742 TTAATAGCAT AGATCTAATT AATTACTATA TAATTTCTCA TCAGATCGTC CGACCTGGTG 35031 |||||| |||||||||| .......... .......... .......... .......... ....ATCGTC CGACCTGGTG 758 GCATGGAGAG GCCAACGGAC GCTTTCAAGG AGACGCACAA CCTGGTGGTG GCAGTTGAGG 34971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGGAGAG GCCAACGGAC GCTTTCAAGG AGACGCACAA CCTGGTGGTG GCAGTTGAGG 818 ACACCTACGT CGGTGGACTC GTTTCCAACC TTCAGGTGGC GGAGCTCATC GCGTGCATCG 34911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACCTACGT CGGTGGACTC GTTTCCAACC TTCAGGTGGC GGAGCTCATC GCGTGCATCG 878 CCAGCAACAG GAGAACGGCC TACTGCAAGG TGGTCGAAGC GATCGCAGAG ACCACCGCGC 34851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCAACAG GAGAACGGCC TACTGCAAGG TGGTCGAAGC GATCGCAGAG ACCACCGCGC 938 CATTGCTGCC CACGGAGGAT CAGCTCGCCA ACATACCTTC AAAGCGGGTA TACCCATGCC 34791 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CATTGCTGCC CACGGAGGAT CAGCTCGCCA ACATACCTTC AAAGCGG... .......... 985 TATTATTAGC ATTTAATTTC TCCATTTCAT ATTATAATTT GATATTTTTC ACAGTCAATA 34731 .......... .......... .......... .......... .......... .......... 985 // intron part 34730 34311 (420 n) not shown // //........ .......... .......... .......... .......... ........// ACCGACTTAT AATATTTTTA TTATATACAT ATGAAATAAT GTGTTAAATT GATGGCATAT 34251 .......... .......... .......... .......... .......... .......... 985 GTATACCCAT ATGTGCAGCA ACCTCCGCCC GAACCTGAGG TAGTTCAGCA GGGAGAGACC 34191 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........CA ACCTCCGCCC GAACCTGAGG TAGTTCAGCA GGGAGAGACC 1027 CCTCCAAAAC CGATCCAGCA AAGCCAACGA CCACTCTCAC CCTACACGGC GTAAGTATAA 34131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCAAAAC CGATCCAGCA AAGCCAACGA CCACTCTCAC CCTACACGGC .......... 1077 CGTGCACCTA CATATACAGT ACATTCTACT CCCTAAATTA ATCCTATTTT TTCTATAAAA 34071 .......... .......... .......... .......... .......... .......... 1077 // intron part 34070 25971 (8100 n) not shown // //........ .......... .......... .......... .......... ........// ATAACTTCAG ATTACCTGTT GGCAATATAT AGCTTTGTGC TGATGATTTT GGCCGGTCTG 25911 .......... .......... .......... .......... .......... .......... 1077 GCATGGCTAC AGATTTGTGG ACCTGAAGCC TCCAAGCTCG CCATCGCCGT GCCCACCATC 25851 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..ATTTGTGG ACCTGAAGCC TCCAAGCTCG CCATCGCCGT GCCCACCATC 1125 AGCAGCAGCT CCTGCTCCTA CTTCTACAGA TACCGCTGCG GCAGGTTCAT CGTCAACGTT 25791 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCAGCT CCTGCTCCTA CTTCTACAGA TACCGCTGCG GCAGGTTCAT CGTCAACGTT 1185 GAACTCCAGC GCCACCGGCA CCCCCATCAG CGTGGATCAA CCGAAGCAGC AGCAGAGGCC 25731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTCCAGC GCCACCGGCA CCCCCATCAG CGTGGATCAA CCGAAGCAGC AGCAGAGGCC 1245 TCTTTCACCG TACACTAGGT ACTATATATA CTTAAGACTA ATTGATTAAT TGATGCCATT 25671 |||||||||| |||||||| TCTTTCACCG TACACTAG.. .......... .......... .......... .......... 1263 TCATTTTTGG TGTTGTCTAT TAATGAATTG GTTAATTAAT TTGTTGAATG CACGGTGCAC 25611 .......... .......... .......... .......... .......... .......... 1263 CGTGGATGTA ATGATTTGTT CTAAGATATG AGGAGCTGAA GCCACCCAGC TCGCCGTCAC 25551 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....ATATG AGGAGCTGAA GCCACCCAGC TCGCCGTCAC 1298 CGACGCCGCC ATCAGCAGCT TCATCGGCTT CTGTTTCTGC TTCTCCTGAT ACACCTCCTG 25491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACGCCGCC ATCAGCAGCT TCATCGGCTT CTGTTTCTGC TTCTCCTGAT ACACCTCCTG 1358 CAGCAGCAGC TTCATCGGCG GCGTTGGACT CCAGCGCCAA CGGCACTCCC ATCACCGGCG 25431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGCAGC TTCATCGGCG GCGTTGGACT CCAGCGCCAA CGGCACTCCC ATCACCGGCG 1418 ATCAACTGAA TCAGCAGCAG AGTCCTCTTT CACCATACAC AAGGTGCGTA CTGTACGACT 25371 |||||||||| |||||||||| |||||||||| |||||||||| ||| ATCAACTGAA TCAGCAGCAG AGTCCTCTTT CACCATACAC AAG....... .......... 1461 ATATATGTAT ATACATGCTT GTCCATTCTT GTACTAATTC GATCTTTTTG TGAATGCATT 25311 .......... .......... .......... .......... .......... .......... 1461 ATTCAAGGTA CGAGGAACTC AAGCCTCCAA GCTCGCCAAC CCCATCTACC CCCAAACTAT 25251 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTA CGAGGAACTC AAGCCTCCAA GCTCGCCAAC CCCATCTACC CCCAAACTAT 1514 AGAAGCAAGA TAGTTAGCAT ATAAGGCTAT ATTCGTTTTT TGCCTTGGCC AATCATCACT 25191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCAAGA TAGTTAGCAT ATAAGGCTAT ATTCGTTTTT TGCCTTGGCC AATCATCACT 1574 CAAGATCCAG TTATCCACTA CTAGTTAATT ACCTTCATCC AGGAAAAGCG ACTTGTATTT 25131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATCCAG TTATCCACTA CTAGTTAATT ACCTTCATCC AGGAAAAGCG ACTTGTATTT 1634 TTCATGTCCA AATTCAAAAA AAACAAAGAG TAGTATTGGA ATTGGAAGTC AACAAATTAA 25071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGTCCA AATTCAAAAA AAACAAAGAG TAGTATTGGA ATTGGAAGTC AACAAATTAA 1694 TTCTCTCT 25063 |||||||| TTCTCTCT 1702 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32990143|dbj|AK104934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D05, full insert sequence 1 AATCATGGAG CAAGCAGCGA AGGCCACCAT CTCACTGTCG CCGCCGAGTT ACGCTGGATG 61 TTGCATGGCA GCATGTCCCT ACCGATCAAC GCGGCACCTG CGCGGAGGAG GCGGCTGCTC 121 TGCTCGCTCC ATCTCCTCCC TCCGGCATGC CCCTTCTGCT CGTGTTTACG CCGCAGCCGC 181 AGCCGCAGCC ACGCCGGAGT CCAAGTCGAC GAAAGAGAAT GACCTCGTCT TCATCGCGGG 241 AGCCACCGGA AAGGTGGGAT CCCGAGCTGT AAGGGAGTTC ATCAAGCTTG GCTTCCGTGT 301 CCGCGCCGGC GTTAGAAGTG CACAGAGAGC ATCGTCCCTT GTGCAGAGTG TTGAGCAACT 361 GAAAGTCGAT GACGATGCAA CTTCGCCCGC AGAAAGGCTC GAGATCGTAG AATGCGACCT 421 GGAGAAGCAG GCGCAGTCAG ACATCGTGTC GGCCATTGGC AACGCGGCGA TTGTGGTGTG 481 CTCCATCGGC GCCAGCGAGA AGGACATCCT GGATGTAACG GGCCCCTACC GTATCGACTA 541 CATGGCCACC AACAACCTCG TGCAGGCTGC AACTGCTGCA AAGGTTGAGC ACTTCATCCT 601 GGTTACATCC CTGGGCACAA ACAGGATTGG CTTCCCTGCT TTTCTTCTCA ACTTGTTTTG 661 GGGGGTTCTG TGCTGGAAAA GGCGAGCTGA AGAAGCGCTC ATCGGCAGCG GCCTTCCTTA 721 CACGATCGTC CGACCTGGCG GCATGGAGAG GCCAACGGAC GCTTTCAAGG AGACGCACAA 781 CCTGGTGGTG GCAGTTGAGG ACACCTACGT CGGTGGACTC GTTTCCAACC TTCAGGTGGC 841 GGAGCTCATC GCGTGCATCG CCAGCAACAG GAGAACGGCC TACTGCAAGG TGGTCGAAGC 901 GATCGCAGAG ACCACCGCGC CATTGCTGCC CACGGAGGAT CAGCTCGCCA ACATACCTTC 961 AAAGCGGCAA CCTCCGCCCG AACCTGAGGT AGTTCAGCAG GGAGAGACCC CTCCAAAACC 1021 GATCCAGCAA AGCCAACGAC CACTCTCACC CTACACGGCA TTTGTGGACC TGAAGCCTCC 1081 AAGCTCGCCA TCGCCGTGCC CACCATCAGC AGCAGCTCCT GCTCCTACTT CTACAGATAC 1141 CGCTGCGGCA GGTTCATCGT CAACGTTGAA CTCCAGCGCC ACCGGCACCC CCATCAGCGT 1201 GGATCAACCG AAGCAGCAGC AGAGGCCTCT TTCACCGTAC ACTAGATATG AGGAGCTGAA 1261 GCCACCCAGC TCGCCGTCAC CGACGCCGCC ATCAGCAGCT TCATCGGCTT CTGTTTCTGC 1321 TTCTCCTGAT ACACCTCCTG CAGCAGCAGC TTCATCGGCG GCGTTGGACT CCAGCGCCAA 1381 CGGCACTCCC ATCACCGGCG ATCAACTGAA TCAGCAGCAG AGTCCTCTTT CACCATACAC 1441 AAGGTACGAG GAACTCAAGC CTCCAAGCTC GCCAACCCCA TCTACCCCCA AACTATAGAA 1501 GCAAGATAGT TAGCATATAA GGCTATATTC GTTTTTTGCC TTGGCCAATC ATCACTCAAG 1561 ATCCAGTTAT CCACTACTAG TTAATTACCT TCATCCAGGA AAAGCGACTT GTATTTTTCA 1621 TGTCCAAATT CAAAAAAAAC AAAGAGTAGT ATTGGAATTG GAAGTCAACA AATTAATTCT 1681 C Genomic Template: file=OSchr10, strand=-, from=37592, to=24766, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 37292 37020 ( 273 n); cDNA 1 273 ( 273 n); score: 0.996 Intron 1 37019 36885 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.674 (s: 1.00) Exon 2 36884 36812 ( 73 n); cDNA 274 346 ( 73 n); score: 1.000 Intron 2 36811 36701 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 36700 36661 ( 40 n); cDNA 347 386 ( 40 n); score: 1.000 Intron 3 36660 36579 ( 82 n); Pd: 0.783 (s: 1.00), Pa: 0.397 (s: 1.00) Exon 4 36578 36396 ( 183 n); cDNA 387 569 ( 183 n); score: 1.000 Intron 4 36395 36264 ( 132 n); Pd: 1.000 (s: 1.00), Pa: 0.702 (s: 1.00) Exon 5 36263 36182 ( 82 n); cDNA 570 651 ( 82 n); score: 1.000 Intron 5 36181 36002 ( 180 n); Pd: 0.995 (s: 1.00), Pa: 0.629 (s: 1.00) Exon 6 36001 35929 ( 73 n); cDNA 652 724 ( 73 n); score: 1.000 Intron 6 35928 35047 ( 882 n); Pd: 0.986 (s: 1.00), Pa: 1.000 (s: 0.98) Exon 7 35046 34804 ( 243 n); cDNA 725 967 ( 243 n); score: 0.996 Intron 7 34803 34233 ( 571 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 8 34232 34141 ( 92 n); cDNA 968 1059 ( 92 n); score: 1.000 Intron 8 34140 25899 (8242 n); Pd: 0.997 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 9 25898 25713 ( 186 n); cDNA 1060 1245 ( 186 n); score: 1.000 Intron 9 25712 25586 ( 127 n); Pd: 0.998 (s: 1.00), Pa: 0.399 (s: 1.00) Exon 10 25585 25388 ( 198 n); cDNA 1246 1443 ( 198 n); score: 1.000 Intron 10 25387 25304 ( 84 n); Pd: 1.000 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 11 25303 25066 ( 238 n); cDNA 1444 1681 ( 238 n); score: 1.000 MATCH OSchr10-v3- 32990143+ 0.999 1641 0.976 C PGS_OSchr10-v3-_32990143+ (37292 37020,36884 36812,36700 36661,36578 36396,36263 36182,36001 35929,35046 34804,34232 34141,25898 25713,25585 25388,25303 25066) Alignment (genomic DNA sequence = upper lines): AATCATGGAG CAAGCAGCGA AGGCCACCAT CTCACTGTCG CCGCCGAGTT ACGCTGGATG 37233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCATGGAG CAAGCAGCGA AGGCCACCAT CTCACTGTCG CCGCCGAGTT ACGCTGGATG 60 TTGCATGGCA GCATGTCCCT ACCGATCAAC GCGGCACCTG CGCAGAGGAG GCGGCTGCTC 37173 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TTGCATGGCA GCATGTCCCT ACCGATCAAC GCGGCACCTG CGCGGAGGAG GCGGCTGCTC 120 TGCTCGCTCC ATCTCCTCCC TCCGGCATGC CCCTTCTGCT CGTGTTTACG CCGCAGCCGC 37113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCGCTCC ATCTCCTCCC TCCGGCATGC CCCTTCTGCT CGTGTTTACG CCGCAGCCGC 180 AGCCGCAGCC ACGCCGGAGT CCAAGTCGAC GAAAGAGAAT GACCTCGTCT TCATCGCGGG 37053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCGCAGCC ACGCCGGAGT CCAAGTCGAC GAAAGAGAAT GACCTCGTCT TCATCGCGGG 240 AGCCACCGGA AAGGTGGGAT CCCGAGCTGT AAGGTACACC TCCTCCTCCT CGATCCGTTC 36993 |||||||||| |||||||||| |||||||||| ||| AGCCACCGGA AAGGTGGGAT CCCGAGCTGT AAG....... .......... .......... 273 GTCCTCCAGG CCGGCTAGCC AGTCATCCCT CGATCGATCT GTCCCTGGAA AAATATACTC 36933 .......... .......... .......... .......... .......... .......... 273 CAGTATGTTA ATTACTGCAG AGACACGTAC GCTTGTATGC GCTTGCAGGG AGTTCATCAA 36873 || |||||||||| .......... .......... .......... .......... ........GG AGTTCATCAA 285 GCTTGGCTTC CGTGTCCGCG CCGGCGTTAG AAGTGCACAG AGAGCATCGT CCCTTGTGCA 36813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGGCTTC CGTGTCCGCG CCGGCGTTAG AAGTGCACAG AGAGCATCGT CCCTTGTGCA 345 GGTAACAATA ATCCATGAAT CTTGCTACCA GCTACACCTA TGTAAATGTT GGAGTACAGT 36753 | G......... .......... .......... .......... .......... .......... 346 ACTTTTCATT TATACATCTT GACCATACAT ACGATCGACA TTTCAATTTC AGAGTGTTGA 36693 |||||||| .......... .......... .......... .......... .......... ..AGTGTTGA 354 GCAACTGAAA GTCGATGACG ATGCAACTTC GCGTGAGTCG TCGGCATAGA TATATTAATT 36633 |||||||||| |||||||||| |||||||||| || GCAACTGAAA GTCGATGACG ATGCAACTTC GC........ .......... .......... 386 CGAGTTTCCG GTTAACTGTT TGTGTCTGAA CTGGATCAAT AATCTCTAGA CCAGCCGCAG 36573 |||||| .......... .......... .......... .......... .......... ....CCGCAG 392 AAAGGCTCGA GATCGTAGAA TGCGACCTGG AGAAGCAGGC GCAGTCAGAC ATCGTGTCGG 36513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCTCGA GATCGTAGAA TGCGACCTGG AGAAGCAGGC GCAGTCAGAC ATCGTGTCGG 452 CCATTGGCAA CGCGGCGATT GTGGTGTGCT CCATCGGCGC CAGCGAGAAG GACATCCTGG 36453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGGCAA CGCGGCGATT GTGGTGTGCT CCATCGGCGC CAGCGAGAAG GACATCCTGG 512 ATGTAACGGG CCCCTACCGT ATCGACTACA TGGCCACCAA CAACCTCGTG CAGGCTGGTA 36393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATGTAACGGG CCCCTACCGT ATCGACTACA TGGCCACCAA CAACCTCGTG CAGGCTG... 569 TGTATATATA ATATACTCTA GCTAGCTTAA TTAGCTTTAA TTTGTTCATC ATTAATATTA 36333 .......... .......... .......... .......... .......... .......... 569 CTCTATAAGC AGAAACAATT AATAATTGAA ACTCATTAAC TACGTACATC ATTGACGTAC 36273 .......... .......... .......... .......... .......... .......... 569 GTGCGCCAGC AACTGCTGCA AAGGTTGAGC ACTTCATCCT GGTTACATCC CTGGGCACAA 36213 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........C AACTGCTGCA AAGGTTGAGC ACTTCATCCT GGTTACATCC CTGGGCACAA 620 ACAGGATTGG CTTCCCTGCT TTTCTTCTCA AGTAAGCTAG ATCGATGTGT AATTAATTAA 36153 |||||||||| |||||||||| |||||||||| | ACAGGATTGG CTTCCCTGCT TTTCTTCTCA A......... .......... .......... 651 TTTCCTTGTT CGATATAATT ATTGGCCCTG TTTTAGTTTG AGGAAGAAAA AAAGAGATCG 36093 .......... .......... .......... .......... .......... .......... 651 ATATGTATGC ATATATATGT AGACAGCCCA GCCCTTTAGG ACGTACAAAA ACGAAATGAA 36033 .......... .......... .......... .......... .......... .......... 651 ATTTATGATG CATATGCACG CATGGTTACA GCTTGTTTTG GGGGGTTCTG TGCTGGAAAA 35973 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CTTGTTTTG GGGGGTTCTG TGCTGGAAAA 680 GGCGAGCTGA AGAAGCGCTC ATCGGCAGCG GCCTTCCTTA CACGGTACGC TTTCTTTAAG 35913 |||||||||| |||||||||| |||||||||| |||||||||| |||| GGCGAGCTGA AGAAGCGCTC ATCGGCAGCG GCCTTCCTTA CACG...... .......... 724 ATAATAAAAA TGGTTTGCAT CTTCAGCTTC TACCAATGAG TTTAGGTGTA TTGTCAGGTA 35853 .......... .......... .......... .......... .......... .......... 724 // intron part 35852 35133 (720 n) not shown // //........ .......... .......... .......... .......... ........// AATATGTAAA TATTAATGGT ATATTTTAAA ACCAGTAAAA TTTTAATAGC ATAGATCTAA 35073 .......... .......... .......... .......... .......... .......... 724 TTAATTACTA TATAATTTCT CATCAGATCG TCCGACCTGG TGGCATGGAG AGGCCAACGG 35013 |||| |||||||||| ||||||||| |||||||||| .......... .......... ......ATCG TCCGACCTGG CGGCATGGAG AGGCCAACGG 758 ACGCTTTCAA GGAGACGCAC AACCTGGTGG TGGCAGTTGA GGACACCTAC GTCGGTGGAC 34953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCTTTCAA GGAGACGCAC AACCTGGTGG TGGCAGTTGA GGACACCTAC GTCGGTGGAC 818 TCGTTTCCAA CCTTCAGGTG GCGGAGCTCA TCGCGTGCAT CGCCAGCAAC AGGAGAACGG 34893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTTTCCAA CCTTCAGGTG GCGGAGCTCA TCGCGTGCAT CGCCAGCAAC AGGAGAACGG 878 CCTACTGCAA GGTGGTCGAA GCGATCGCAG AGACCACCGC GCCATTGCTG CCCACGGAGG 34833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACTGCAA GGTGGTCGAA GCGATCGCAG AGACCACCGC GCCATTGCTG CCCACGGAGG 938 ATCAGCTCGC CAACATACCT TCAAAGCGGG TATACCCATG CCTATTATTA GCATTTAATT 34773 |||||||||| |||||||||| ||||||||| ATCAGCTCGC CAACATACCT TCAAAGCGG. .......... .......... .......... 967 TCTCCATTTC ATATTATAAT TTGATATTTT TCACAGTCAA TATTTTTTAT TTTAAGCTCA 34713 .......... .......... .......... .......... .......... .......... 967 // intron part 34712 34293 (420 n) not shown // //........ .......... .......... .......... .......... ........// TATTATATAC ATATGAAATA ATGTGTTAAA TTGATGGCAT ATGTATACCC ATATGTGCAG 34233 .......... .......... .......... .......... .......... .......... 967 CAACCTCCGC CCGAACCTGA GGTAGTTCAG CAGGGAGAGA CCCCTCCAAA ACCGATCCAG 34173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCTCCGC CCGAACCTGA GGTAGTTCAG CAGGGAGAGA CCCCTCCAAA ACCGATCCAG 1027 CAAAGCCAAC GACCACTCTC ACCCTACACG GCGTAAGTAT AACGTGCACC TACATATACA 34113 |||||||||| |||||||||| |||||||||| || CAAAGCCAAC GACCACTCTC ACCCTACACG GC........ .......... .......... 1059 GTACATTCTA CTCCCTAAAT TAATCCTATT TTTTCTATAA AAAAACTAGT GTAGAAACTT 34053 .......... .......... .......... .......... .......... .......... 1059 // intron part 34052 26013 (8040 n) not shown // //........ .......... .......... .......... .......... ........// AATATCGAAA TCCTAACTCA TTAGCTTTGT ACTGATTTTG CCATAACTTC AGATTACCTG 25953 .......... .......... .......... .......... .......... .......... 1059 TTGGCAATAT ATAGCTTTGT GCTGATGATT TTGGCCGGTC TGGCATGGCT ACAGATTTGT 25893 |||||| .......... .......... .......... .......... .......... ....ATTTGT 1065 GGACCTGAAG CCTCCAAGCT CGCCATCGCC GTGCCCACCA TCAGCAGCAG CTCCTGCTCC 25833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACCTGAAG CCTCCAAGCT CGCCATCGCC GTGCCCACCA TCAGCAGCAG CTCCTGCTCC 1125 TACTTCTACA GATACCGCTG CGGCAGGTTC ATCGTCAACG TTGAACTCCA GCGCCACCGG 25773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTCTACA GATACCGCTG CGGCAGGTTC ATCGTCAACG TTGAACTCCA GCGCCACCGG 1185 CACCCCCATC AGCGTGGATC AACCGAAGCA GCAGCAGAGG CCTCTTTCAC CGTACACTAG 25713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCCCCATC AGCGTGGATC AACCGAAGCA GCAGCAGAGG CCTCTTTCAC CGTACACTAG 1245 GTACTATATA TACTTAAGAC TAATTGATTA ATTGATGCCA TTTCATTTTT GGTGTTGTCT 25653 .......... .......... .......... .......... .......... .......... 1245 ATTAATGAAT TGGTTAATTA ATTTGTTGAA TGCACGGTGC ACCGTGGATG TAATGATTTG 25593 .......... .......... .......... .......... .......... .......... 1245 TTCTAAGATA TGAGGAGCTG AAGCCACCCA GCTCGCCGTC ACCGACGCCG CCATCAGCAG 25533 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......ATA TGAGGAGCTG AAGCCACCCA GCTCGCCGTC ACCGACGCCG CCATCAGCAG 1298 CTTCATCGGC TTCTGTTTCT GCTTCTCCTG ATACACCTCC TGCAGCAGCA GCTTCATCGG 25473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCATCGGC TTCTGTTTCT GCTTCTCCTG ATACACCTCC TGCAGCAGCA GCTTCATCGG 1358 CGGCGTTGGA CTCCAGCGCC AACGGCACTC CCATCACCGG CGATCAACTG AATCAGCAGC 25413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCGTTGGA CTCCAGCGCC AACGGCACTC CCATCACCGG CGATCAACTG AATCAGCAGC 1418 AGAGTCCTCT TTCACCATAC ACAAGGTGCG TACTGTACGA CTATATATGT ATATACATGC 25353 |||||||||| |||||||||| ||||| AGAGTCCTCT TTCACCATAC ACAAG..... .......... .......... .......... 1443 TTGTCCATTC TTGTACTAAT TCGATCTTTT TGTGAATGCA TTATTCAAGG TACGAGGAAC 25293 | |||||||||| .......... .......... .......... .......... .........G TACGAGGAAC 1454 TCAAGCCTCC AAGCTCGCCA ACCCCATCTA CCCCCAAACT ATAGAAGCAA GATAGTTAGC 25233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGCCTCC AAGCTCGCCA ACCCCATCTA CCCCCAAACT ATAGAAGCAA GATAGTTAGC 1514 ATATAAGGCT ATATTCGTTT TTTGCCTTGG CCAATCATCA CTCAAGATCC AGTTATCCAC 25173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAAGGCT ATATTCGTTT TTTGCCTTGG CCAATCATCA CTCAAGATCC AGTTATCCAC 1574 TACTAGTTAA TTACCTTCAT CCAGGAAAAG CGACTTGTAT TTTTCATGTC CAAATTCAAA 25113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTAGTTAA TTACCTTCAT CCAGGAAAAG CGACTTGTAT TTTTCATGTC CAAATTCAAA 1634 AAAAACAAAG AGTAGTATTG GAATTGGAAG TCAACAAATT AATTCTC 25066 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AAAAACAAAG AGTAGTATTG GAATTGGAAG TCAACAAATT AATTCTC 1681 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32987765|dbj|AK102556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097G03, full insert sequence 1 GTTCCATCCA TGGAGATACT TAGCCCGTCG CCGCCGCCCA GCCCCGGCCC CGCCTCCGCC 61 TCCGCCTCCG CCTCCGGCTC CGCCATGGAT TCCTTCATCC ACAGAGGTGC CGGCTGGCAT 121 TTCCCCCGCC GCGACAACGT CGACGCGCGG GTCCATGTCG CCGTCGGGAG GTCGCCGGAG 181 AAGACGTTGG GCCTGCTGCG ATGGGCCTTC CGCCGCTTCG CCTGCGCCCA AGTCGTCCTC 241 GTGCACGTCC ACCAACCTTC TCCGCTCATC CCTACCCTCT TAGGCAAGAT TCCTGCCGCT 301 CAAGCCACCG AAGAGCTCGT GCTGTCGCAT CGCAAATCCG AGAAGGACGA AATGAACAAG 361 ATCCTCCTCA CCTACCTCAC TTTCTGTCAC AGGGCACAGG TTCAGGCAAG TCTTCTTGTC 421 ACGGAGAATG AACAAATCCA TGATGGTATT ATCACTTTGG TCAAAGATCA TGGGATTACA 481 AAGCTTGTCA TGGGTTCTAC ACCTGATACT TGCTTCAAGT TGAAAGCGAG CTATGGCAAA 541 GCATCTTTTA TGGCAAGGAA TGCCCCATCA TTTTGTGAAA TCTGGTTTGT TTGGAGAGGA 601 AGACACATTT GGACCAGAGA AGCAGCTGCA GCCATTGGCA ACAATATCTC AGTTTACAAT 661 GAAGATGATG TTATGATCAG GAAAAGAATC AGGTTCAGCT CTACTAGTAA CAATGCTGAA 721 TCCATACTTG ATGAAGGATA CATTTCATAC GAGGCACAAA CACCTGCTGA TCGTTATGAA 781 ATCACCATTT CAGATAATGG TCAACCGAAT GATTATGAAT CTCTTGTTGA TGCCAACCAT 841 TTCTGCAATA TTATTGTACC AAATTTGCAA AATGCACAGT CTGCATTTAA CTCAACATTC 901 CAGCCTGGTT CTTCTGTAGA CATGGAATCA TTAGTGTTAT ATCCTCAGGA AATCTTGGAT 961 AAAAATTTCA AGCAGGTCAT TCTAGAAGCA GAGAGATCAA GGAAGGATGC TTTTGTTGAG 1021 CTTCTCAAGC GCAAAGATAC AGAGTCAAGA GTAGCCGGTG TTATTGCCAG GGCAAAAGCT 1081 TCTGAGTTCG CTCAAAAACA AGAAATGAAA ATGCGGGAGG AACTTGAAGC TTTGTTGACA 1141 GCCACAAAAA AGCAGCATGA AGATCTTGCA GAAAATAAAG AAAAGGCTAC AGAAGGGTTG 1201 GACTCTTCGA TGAGAAAACT AGCCATCCTA GATGCACGTG CTAAAAGCAT AGCTTTTCGG 1261 ATGAATGAAG CTGTGGCAGA GCTGAAATTG ATTCAATCTT CCATAGGAAC ACTCAATCAG 1321 GAAATTCCCA AAAGAGAGAA GCTAGAACTT GTACATACTG ACCAGGTTGA AAGGTGTGCA 1381 TATAACCACA TTATGTTACC AAATTGCAGT TCAACTGTTT GTGCTGATGA CTTGTACAAC 1441 TTTAGAGAAT TGACTTTGTC AGATATTAAA GCTGCAACAT GCAAGTTCTC AGACAGCTTA 1501 AAAGTACTGC CACGAGGTCT TGGATGTGTT TATAAAGGAG AGATTATGAA CAGAAGTGTA 1561 ATGATTTATA AGTTGCACTC GTGTATCATT CAGAGTTCGA TGCAGTTCCA GCAAGAGGTC 1621 CACCTCATTA GCAAGGTGAG GCACCCTCAC CTGGTGACTT TGATTGGGGC ATGCCCGGAT 1681 GCATTGTGTC TTGACTATGA ATACGTGCCA AACGGGAGCC TTCACGACCG CCTTTGGAGC 1741 AAGTGCGGCA TTCCTCAGTT GCCATGGAAA ATCCGTGCAC GTATTGTTGC TGAAATCTCA 1801 AGTGCTCTAT TCTTCTTGCA TTCCTGTAAA CCTCAGATGA TTGTCCACGG TGACTTGAAG 1861 CTTGAAAACA TCCTTTTAGA TGCCAACCTG CACTGCAAGA TAGCTGATTG TGGTATTTCT 1921 CAATTATTCA TGGAAGATGC CAAGGACGCA GACCCGGAAT ACCGGAGAAG CAAACCATTG 1981 ACACCCAAAT CTGACATATA CTCCTTTGGG ATTGTGATAC TCCAGTTACT AACTGGGAAG 2041 CAGGCTGCAG GCCTTCCCAG CGAAGTAAGG CGTGCAATGT CCAGTGGAAA GCTATGGTCA 2101 TTGTTAGATC CAACAGCTGG AGAGTGGCCT CTGGAGGTGG CTCGAAGGTT AGCAGAGTTG 2161 GGGCTCAAGT GCAGTGAGGC AGCAAGTCCA GAGCTGCTGA CTCCAGAAAC TGTGCGAGAT 2221 CTGGAACAGC TCCACCTGAT GAGGGATAAT AGACAAGTGC CCTCCTTCTT CCTGTGCCCG 2281 ATCCTCAAGG AAGTGATGCA TGATCCCCAG GTGGGGGCGG ACGGGTTGAC GTACGAAGGG 2341 CGCGCCATTT CCGAGTTGAT GGACAATGGC CCTCCAATCA CCCCCAACCA CGCCCTTCGT 2401 TTTGCCATCC ATGACTGGCT CTCTCAGAGA TCAACTCCTT TCTGATTTTC CCCAAGGATC 2461 TGGATTTTGT ATGTACACAT TGTTTATTTC ATAGTCAGTC TGTTTGTTAG TAGCACATGC 2521 ATGATGTAAC GAAATAATAA TAGAGTAAAT ATTTCAAGTT TCATGTATCG AGCAAATGTC 2581 ACTGTACATA TAGAGTGAGT TAGGAGCTAT GTTCAGGGCA GTCGGAGTAT CTTGCTAGTT 2641 GCCCGTTTGG TCTAAGTAGC AGTTGTCATG GGGTTGACAA ACTACCCCCT CCGTTTCTTT 2701 ACTTATGTAA GATGCTTTGA TTTTTTTATC AGTTAAAGTT CAATCAAATT TATAGAAAAC 2761 ATAGTTACAT TTTTAAC Genomic Template: file=OSchr10, strand=+, from=45849, to=52299, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 46147 46426 ( 280 n); cDNA 1 280 ( 280 n); score: 0.993 Intron 1 46427 46585 ( 159 n); Pd: 1.000 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 46586 46704 ( 119 n); cDNA 281 399 ( 119 n); score: 1.000 Intron 2 46705 46816 ( 112 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 46817 46926 ( 110 n); cDNA 400 509 ( 110 n); score: 1.000 Intron 3 46927 48974 (2048 n); Pd: 0.991 (s: 1.00), Pa: 0.941 (s: 1.00) Exon 4 48975 49413 ( 439 n); cDNA 510 948 ( 439 n); score: 1.000 Intron 4 49414 49508 ( 95 n); Pd: 0.896 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 5 49509 49631 ( 123 n); cDNA 949 1071 ( 123 n); score: 1.000 Intron 5 49632 49802 ( 171 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 49803 50348 ( 546 n); cDNA 1072 1617 ( 546 n); score: 1.000 Intron 6 50349 50726 ( 378 n); Pd: 0.988 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 7 50727 51398 ( 672 n); cDNA 1618 2289 ( 672 n); score: 0.999 Intron 7 51399 51511 ( 113 n); Pd: 0.752 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 8 51512 51999 ( 488 n); cDNA 2290 2777 ( 488 n); score: 1.000 MATCH OSchr10-v3+ 32987765+ 0.999 2777 1.000 C PGS_OSchr10-v3+_32987765+ (46147 46426,46586 46704,46817 46926,48975 49413,49509 49631,49803 50348,50727 51398,51512 51999) Alignment (genomic DNA sequence = upper lines): CATCCATCCA TGGAGATACT TAGCCCGTCG CCGCCGCCCA GCCCCGGCCC CGCCTCCGCC 46206 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCATCCA TGGAGATACT TAGCCCGTCG CCGCCGCCCA GCCCCGGCCC CGCCTCCGCC 60 TCCGCCTCCG CCTCCGGCTC CGCCATGGAT TCCTTCATCC ACAGAGGTGC CGGCTGGCAT 46266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGCCTCCG CCTCCGGCTC CGCCATGGAT TCCTTCATCC ACAGAGGTGC CGGCTGGCAT 120 TTCCCCCGCC GCGACAACGT CGACGCGCGG GTCCATGTCG CCGTCGGGAG GTCGCCGGAG 46326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCCCGCC GCGACAACGT CGACGCGCGG GTCCATGTCG CCGTCGGGAG GTCGCCGGAG 180 AAGACGTTGG GCCTGCTGCG ATGGGCCTTC CGCCGCTTCG CCTGCGCCCA AGTCGTCCTC 46386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACGTTGG GCCTGCTGCG ATGGGCCTTC CGCCGCTTCG CCTGCGCCCA AGTCGTCCTC 240 GTGCACGTCC ACCAACCTTC TCCGCTCATC CCTACCCTCT GTACGATTCT AGTGTTTCAA 46446 |||||||||| |||||||||| |||||||||| |||||||||| GTGCACGTCC ACCAACCTTC TCCGCTCATC CCTACCCTCT .......... .......... 280 TTCCTTCTTT CTTTCTTTCT TTCTTGGAGT ATTTATTTAT TTATGAGTTA ATTTCTCGAT 46506 .......... .......... .......... .......... .......... .......... 280 TCTTCCTTCT CCGCCGCTCA CGGCTCACCC ATCACATCTT CTTCTTCTTC TTCTTCTTCT 46566 .......... .......... .......... .......... .......... .......... 280 TCTTCTTCTT CTTCTTCAGT AGGCAAGATT CCTGCCGCTC AAGCCACCGA AGAGCTCGTG 46626 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........T AGGCAAGATT CCTGCCGCTC AAGCCACCGA AGAGCTCGTG 321 CTGTCGCATC GCAAATCCGA GAAGGACGAA ATGAACAAGA TCCTCCTCAC CTACCTCACT 46686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCGCATC GCAAATCCGA GAAGGACGAA ATGAACAAGA TCCTCCTCAC CTACCTCACT 381 TTCTGTCACA GGGCACAGGT AAGTGCTACT CACCTTCTTC TCCAACCTTT TTTTTATCTA 46746 |||||||||| |||||||| TTCTGTCACA GGGCACAG.. .......... .......... .......... .......... 399 GGAGAAACAT CACAGATTCA ATTTTTATGG GTGTGCGACG CTAATTAATC GGGCTTTTGC 46806 .......... .......... .......... .......... .......... .......... 399 TCTGCCACAG GTTCAGGCAA GTCTTCTTGT CACGGAGAAT GAACAAATCC ATGATGGTAT 46866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GTTCAGGCAA GTCTTCTTGT CACGGAGAAT GAACAAATCC ATGATGGTAT 449 TATCACTTTG GTCAAAGATC ATGGGATTAC AAAGCTTGTC ATGGGTTCTA CACCTGATAC 46926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCACTTTG GTCAAAGATC ATGGGATTAC AAAGCTTGTC ATGGGTTCTA CACCTGATAC 509 GTATGTACTA CTTCAATTTT CATCAATTGC GTGCTAACAA AACACCCTTC TTGATAGTGC 46986 .......... .......... .......... .......... .......... .......... 509 // intron part 46987 48906 (1920 n) not shown // //........ .......... .......... .......... .......... ........// CCCTTTCTTT TGTTTTATTT CGGGGTGGGT GTCCCTGAAA ATTTGAACTC TCTCTACCTG 48966 .......... .......... .......... .......... .......... .......... 509 TAATGCAGTT GCTTCAAGTT GAAAGCGAGC TATGGCAAAG CATCTTTTAT GGCAAGGAAT 49026 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TT GCTTCAAGTT GAAAGCGAGC TATGGCAAAG CATCTTTTAT GGCAAGGAAT 561 GCCCCATCAT TTTGTGAAAT CTGGTTTGTT TGGAGAGGAA GACACATTTG GACCAGAGAA 49086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCCATCAT TTTGTGAAAT CTGGTTTGTT TGGAGAGGAA GACACATTTG GACCAGAGAA 621 GCAGCTGCAG CCATTGGCAA CAATATCTCA GTTTACAATG AAGATGATGT TATGATCAGG 49146 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTGCAG CCATTGGCAA CAATATCTCA GTTTACAATG AAGATGATGT TATGATCAGG 681 AAAAGAATCA GGTTCAGCTC TACTAGTAAC AATGCTGAAT CCATACTTGA TGAAGGATAC 49206 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAATCA GGTTCAGCTC TACTAGTAAC AATGCTGAAT CCATACTTGA TGAAGGATAC 741 ATTTCATACG AGGCACAAAC ACCTGCTGAT CGTTATGAAA TCACCATTTC AGATAATGGT 49266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCATACG AGGCACAAAC ACCTGCTGAT CGTTATGAAA TCACCATTTC AGATAATGGT 801 CAACCGAATG ATTATGAATC TCTTGTTGAT GCCAACCATT TCTGCAATAT TATTGTACCA 49326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCGAATG ATTATGAATC TCTTGTTGAT GCCAACCATT TCTGCAATAT TATTGTACCA 861 AATTTGCAAA ATGCACAGTC TGCATTTAAC TCAACATTCC AGCCTGGTTC TTCTGTAGAC 49386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGCAAA ATGCACAGTC TGCATTTAAC TCAACATTCC AGCCTGGTTC TTCTGTAGAC 921 ATGGAATCAT TAGTGTTATA TCCTCAGGTG CTCTCCTGCT ACATTGACAT GTTCATTGAT 49446 |||||||||| |||||||||| ||||||| ATGGAATCAT TAGTGTTATA TCCTCAG... .......... .......... .......... 948 AATTTTGTAA TTAAAGGATG ATCCTTTTTT TCAATTTAAA TACTGATGGT ATTATCTGTC 49506 .......... .......... .......... .......... .......... .......... 948 AGGAAATCTT GGATAAAAAT TTCAAGCAGG TCATTCTAGA AGCAGAGAGA TCAAGGAAGG 49566 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GAAATCTT GGATAAAAAT TTCAAGCAGG TCATTCTAGA AGCAGAGAGA TCAAGGAAGG 1006 ATGCTTTTGT TGAGCTTCTC AAGCGCAAAG ATACAGAGTC AAGAGTAGCC GGTGTTATTG 49626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTTTTGT TGAGCTTCTC AAGCGCAAAG ATACAGAGTC AAGAGTAGCC GGTGTTATTG 1066 CCAGGGTATG CAAACCACTT ATCCTATCTT GTATTTTAAA CTGCACGGTT CCTCTGCAGT 49686 ||||| CCAGG..... .......... .......... .......... .......... .......... 1071 ATAACATTAT TGGGAAACCA AACGGAAGTT TTAGATTCTT TAACATTGAT TTTGAATAAT 49746 .......... .......... .......... .......... .......... .......... 1071 GTGGTGAAAA TTACATATGC ATTCCTTTGT TGATCTGGCT TGTGCTTCTT GAGCAGGCAA 49806 |||| .......... .......... .......... .......... .......... ......GCAA 1075 AAGCTTCTGA GTTCGCTCAA AAACAAGAAA TGAAAATGCG GGAGGAACTT GAAGCTTTGT 49866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTCTGA GTTCGCTCAA AAACAAGAAA TGAAAATGCG GGAGGAACTT GAAGCTTTGT 1135 TGACAGCCAC AAAAAAGCAG CATGAAGATC TTGCAGAAAA TAAAGAAAAG GCTACAGAAG 49926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACAGCCAC AAAAAAGCAG CATGAAGATC TTGCAGAAAA TAAAGAAAAG GCTACAGAAG 1195 GGTTGGACTC TTCGATGAGA AAACTAGCCA TCCTAGATGC ACGTGCTAAA AGCATAGCTT 49986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGGACTC TTCGATGAGA AAACTAGCCA TCCTAGATGC ACGTGCTAAA AGCATAGCTT 1255 TTCGGATGAA TGAAGCTGTG GCAGAGCTGA AATTGATTCA ATCTTCCATA GGAACACTCA 50046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGGATGAA TGAAGCTGTG GCAGAGCTGA AATTGATTCA ATCTTCCATA GGAACACTCA 1315 ATCAGGAAAT TCCCAAAAGA GAGAAGCTAG AACTTGTACA TACTGACCAG GTTGAAAGGT 50106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGGAAAT TCCCAAAAGA GAGAAGCTAG AACTTGTACA TACTGACCAG GTTGAAAGGT 1375 GTGCATATAA CCACATTATG TTACCAAATT GCAGTTCAAC TGTTTGTGCT GATGACTTGT 50166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCATATAA CCACATTATG TTACCAAATT GCAGTTCAAC TGTTTGTGCT GATGACTTGT 1435 ACAACTTTAG AGAATTGACT TTGTCAGATA TTAAAGCTGC AACATGCAAG TTCTCAGACA 50226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACTTTAG AGAATTGACT TTGTCAGATA TTAAAGCTGC AACATGCAAG TTCTCAGACA 1495 GCTTAAAAGT ACTGCCACGA GGTCTTGGAT GTGTTTATAA AGGAGAGATT ATGAACAGAA 50286 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTAAAAGT ACTGCCACGA GGTCTTGGAT GTGTTTATAA AGGAGAGATT ATGAACAGAA 1555 GTGTAATGAT TTATAAGTTG CACTCGTGTA TCATTCAGAG TTCGATGCAG TTCCAGCAAG 50346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTAATGAT TTATAAGTTG CACTCGTGTA TCATTCAGAG TTCGATGCAG TTCCAGCAAG 1615 AGGTACTCTC TGTTACCCTG TTTATCATGC TGGTTGATAT ATTAGTGATA CATAGCTCAA 50406 || AG........ .......... .......... .......... .......... .......... 1617 TGAAACTGCT AAAAGTTATT TTGCAGCTCC ACATATCACT TGAAACTCTA TGGGGCTTGT 50466 .......... .......... .......... .......... .......... .......... 1617 // intron part 50467 50646 (180 n) not shown // //........ .......... .......... .......... .......... ........// AAGTGTTTAT AAAAACCTAG GAGCATATAG CAATAGCAGT TATTTAGCAG AAGGTAGTTA 50706 .......... .......... .......... .......... .......... .......... 1617 TTTCACATTG TTTTTGGCAG GTCCACCTCA TTAGCAAGGT GAGGCACCCT CACCTGGTGA 50766 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTCCACCTCA TTAGCAAGGT GAGGCACCCT CACCTGGTGA 1657 CTTTGATTGG GGCATGCCCG GATGCATTGT GTCTTGTCTA TGAATACGTG CCAAACGGGA 50826 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| CTTTGATTGG GGCATGCCCG GATGCATTGT GTCTTGACTA TGAATACGTG CCAAACGGGA 1717 GCCTTCACGA CCGCCTTTGG AGCAAGTGCG GCATTCCTCA GTTGCCATGG AAAATCCGTG 50886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTCACGA CCGCCTTTGG AGCAAGTGCG GCATTCCTCA GTTGCCATGG AAAATCCGTG 1777 CACGTATTGT TGCTGAAATC TCAAGTGCTC TATTCTTCTT GCATTCCTGT AAACCTCAGA 50946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGTATTGT TGCTGAAATC TCAAGTGCTC TATTCTTCTT GCATTCCTGT AAACCTCAGA 1837 TGATTGTCCA CGGTGACTTG AAGCTTGAAA ACATCCTTTT AGATGCCAAC CTGCACTGCA 51006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTGTCCA CGGTGACTTG AAGCTTGAAA ACATCCTTTT AGATGCCAAC CTGCACTGCA 1897 AGATAGCTGA TTGTGGTATT TCTCAATTAT TCATGGAAGA TGCCAAGGAC GCAGACCCGG 51066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAGCTGA TTGTGGTATT TCTCAATTAT TCATGGAAGA TGCCAAGGAC GCAGACCCGG 1957 AATACCGGAG AAGCAAACCA TTGACACCCA AATCTGACAT ATACTCCTTT GGGATTGTGA 51126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATACCGGAG AAGCAAACCA TTGACACCCA AATCTGACAT ATACTCCTTT GGGATTGTGA 2017 TACTCCAGTT ACTAACTGGG AAGCAGGCTG CAGGCCTTCC CAGCGAAGTA AGGCGTGCAA 51186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTCCAGTT ACTAACTGGG AAGCAGGCTG CAGGCCTTCC CAGCGAAGTA AGGCGTGCAA 2077 TGTCCAGTGG AAAGCTATGG TCATTGTTAG ATCCAACAGC TGGAGAGTGG CCTCTGGAGG 51246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCAGTGG AAAGCTATGG TCATTGTTAG ATCCAACAGC TGGAGAGTGG CCTCTGGAGG 2137 TGGCTCGAAG GTTAGCAGAG TTGGGGCTCA AGTGCAGTGA GGCAGCAAGT CCAGAGCTGC 51306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTCGAAG GTTAGCAGAG TTGGGGCTCA AGTGCAGTGA GGCAGCAAGT CCAGAGCTGC 2197 TGACTCCAGA AACTGTGCGA GATCTGGAAC AGCTCCACCT GATGAGGGAT AATAGACAAG 51366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACTCCAGA AACTGTGCGA GATCTGGAAC AGCTCCACCT GATGAGGGAT AATAGACAAG 2257 TGCCCTCCTT CTTCCTGTGC CCGATCCTCA AGGCAAGAAC GAAACCTAAG AACATCGATA 51426 |||||||||| |||||||||| |||||||||| || TGCCCTCCTT CTTCCTGTGC CCGATCCTCA AG........ .......... .......... 2289 GGGCAGAAGC CCATAAGTAA CCCAAAATAT CTACTAATAA TAATGCGGTA GTAATGTGTT 51486 .......... .......... .......... .......... .......... .......... 2289 TTTTTTTTCA TTCTAATTTG TGCAGGAAGT GATGCATGAT CCCCAGGTGG GGGCGGACGG 51546 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GAAGT GATGCATGAT CCCCAGGTGG GGGCGGACGG 2324 GTTGACGTAC GAAGGGCGCG CCATTTCCGA GTTGATGGAC AATGGCCCTC CAATCACCCC 51606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGACGTAC GAAGGGCGCG CCATTTCCGA GTTGATGGAC AATGGCCCTC CAATCACCCC 2384 CAACCACGCC CTTCGTTTTG CCATCCATGA CTGGCTCTCT CAGAGATCAA CTCCTTTCTG 51666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCACGCC CTTCGTTTTG CCATCCATGA CTGGCTCTCT CAGAGATCAA CTCCTTTCTG 2444 ATTTTCCCCA AGGATCTGGA TTTTGTATGT ACACATTGTT TATTTCATAG TCAGTCTGTT 51726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTCCCCA AGGATCTGGA TTTTGTATGT ACACATTGTT TATTTCATAG TCAGTCTGTT 2504 TGTTAGTAGC ACATGCATGA TGTAACGAAA TAATAATAGA GTAAATATTT CAAGTTTCAT 51786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAGTAGC ACATGCATGA TGTAACGAAA TAATAATAGA GTAAATATTT CAAGTTTCAT 2564 GTATCGAGCA AATGTCACTG TACATATAGA GTGAGTTAGG AGCTATGTTC AGGGCAGTCG 51846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCGAGCA AATGTCACTG TACATATAGA GTGAGTTAGG AGCTATGTTC AGGGCAGTCG 2624 GAGTATCTTG CTAGTTGCCC GTTTGGTCTA AGTAGCAGTT GTCATGGGGT TGACAAACTA 51906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTATCTTG CTAGTTGCCC GTTTGGTCTA AGTAGCAGTT GTCATGGGGT TGACAAACTA 2684 CCCCCTCCGT TTCTTTACTT ATGTAAGATG CTTTGATTTT TTTATCAGTT AAAGTTCAAT 51966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCCTCCGT TTCTTTACTT ATGTAAGATG CTTTGATTTT TTTATCAGTT AAAGTTCAAT 2744 CAAATTTATA GAAAACATAG TTACATTTTT AAC 51999 |||||||||| |||||||||| |||||||||| ||| CAAATTTATA GAAAACATAG TTACATTTTT AAC 2777 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32971131|dbj|AK061113.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D08, full insert sequence 1 TGCAACATGC AAGTTCTCAG ACAGCTTAAA AGTACTGCCA CGAGGTCTTG GATGTGTTTA 61 TAAAGGAGAG ATTATGAACA GAAGTGTAAT GATTTATAAG TTGCACTCGT GTATCATTCA 121 GAGTTCGATG CAGTTCCAGC AAGAGGTCCA CCTCATTAGC AAGGTGAGGC ACCCTCACCT 181 GGTGACTTTG ATTGGGGCAT GCCCGGATGC ATTGTGTCTT GTCTATGAAT ACGTGCCAAA 241 CGGGAGCCTT CACGACCGCC TTTGGAGCAA GTGCGGCATT CCTCAGTTGC CATGGAAAAT 301 CCGTGCACGT ATTGTTGCTG AAATCTCAAG TGCTCTATTC TTCTTGCATT CCTGTAAACC 361 TCAGATGATT GTCCACGGTG ACTTGAAGCT TGAAAACATC CTTTTAGATG CCAACCTGCA 421 CTGCAAGATA GCTGATTGTG GTATTTCTCA ATTATTCATG GAAGATGCCA AGGACGCAGA 481 CCCGGAATAC CGGAGAAGCA AACCATTGAC ACCCAAATCT GACATATACT CCTTTGGGAT 541 TGTGATACTC CAGTTACTAA CTGGGAAGCA GGCTGCAGGC CTTCCCAGCG AAGTAAGGCG 601 TGCAATGTCC AGTGGAAAGC TATGGTCATT GTTAGATCCA ACAGCTGGAG AGTGGCCTCT 661 GGAGGTGGCT CGAAGGTTAG CAGAGTTGGG GCTCAAGTGC AGTGAGGCAG CAAGTCCAGA 721 GCTGCTGACT CCAGAAACTG TGCGAGATCT GGAACAGCTC CACCTGATGA GGGATAATAG 781 ACAAGTGCCC TCCTTCTTCC TGTGCCCGAT CCTCAAGGAA GTGATGCATG ATCCCCAGGT 841 GGGGGCGGAC GGGTTGACGT ACGAAGGGCG CGCCATTTCC GAGTTGATGG ACAATGGCCC 901 TCCAATCACC CCCAACCACG CCCTTCGTTT TGCCATCCAT GACTGGCTCT CTCAGAGATC 961 AACTCCTTTC TGATTTTCCC CAAGGATCTG GATTTTGTAT GTACACATTG TTTATTTCAT 1021 AGTCAGTCTG TTTGTTAGTA GCACATGCAT GATGTAACGA AATAATAATA GAGTAAATAT 1081 TTCAAGTTTC ATGTATCGAG C Genomic Template: file=OSchr10, strand=+, from=49904, to=52095, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 50204 50348 ( 145 n); cDNA 1 145 ( 145 n); score: 1.000 Intron 1 50349 50726 ( 378 n); Pd: 0.988 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 2 50727 51398 ( 672 n); cDNA 146 817 ( 672 n); score: 1.000 Intron 2 51399 51511 ( 113 n); Pd: 0.752 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 51512 51795 ( 284 n); cDNA 818 1101 ( 284 n); score: 1.000 MATCH OSchr10-v3+ 32971131+ 1.000 1101 1.000 C PGS_OSchr10-v3+_32971131+ (50204 50348,50727 51398,51512 51795) Alignment (genomic DNA sequence = upper lines): TGCAACATGC AAGTTCTCAG ACAGCTTAAA AGTACTGCCA CGAGGTCTTG GATGTGTTTA 50263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAACATGC AAGTTCTCAG ACAGCTTAAA AGTACTGCCA CGAGGTCTTG GATGTGTTTA 60 TAAAGGAGAG ATTATGAACA GAAGTGTAAT GATTTATAAG TTGCACTCGT GTATCATTCA 50323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGGAGAG ATTATGAACA GAAGTGTAAT GATTTATAAG TTGCACTCGT GTATCATTCA 120 GAGTTCGATG CAGTTCCAGC AAGAGGTACT CTCTGTTACC CTGTTTATCA TGCTGGTTGA 50383 |||||||||| |||||||||| ||||| GAGTTCGATG CAGTTCCAGC AAGAG..... .......... .......... .......... 145 TATATTAGTG ATACATAGCT CAATGAAACT GCTAAAAGTT ATTTTGCAGC TCCACATATC 50443 .......... .......... .......... .......... .......... .......... 145 // intron part 50444 50623 (180 n) not shown // //........ .......... .......... .......... .......... ........// TTTATCACAT AACTTATCGT GCTAAGTGTT TATAAAAACC TAGGAGCATA TAGCAATAGC 50683 .......... .......... .......... .......... .......... .......... 145 AGTTATTTAG CAGAAGGTAG TTATTTCACA TTGTTTTTGG CAGGTCCACC TCATTAGCAA 50743 ||||||| |||||||||| .......... .......... .......... .......... ...GTCCACC TCATTAGCAA 162 GGTGAGGCAC CCTCACCTGG TGACTTTGAT TGGGGCATGC CCGGATGCAT TGTGTCTTGT 50803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAGGCAC CCTCACCTGG TGACTTTGAT TGGGGCATGC CCGGATGCAT TGTGTCTTGT 222 CTATGAATAC GTGCCAAACG GGAGCCTTCA CGACCGCCTT TGGAGCAAGT GCGGCATTCC 50863 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATGAATAC GTGCCAAACG GGAGCCTTCA CGACCGCCTT TGGAGCAAGT GCGGCATTCC 282 TCAGTTGCCA TGGAAAATCC GTGCACGTAT TGTTGCTGAA ATCTCAAGTG CTCTATTCTT 50923 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTTGCCA TGGAAAATCC GTGCACGTAT TGTTGCTGAA ATCTCAAGTG CTCTATTCTT 342 CTTGCATTCC TGTAAACCTC AGATGATTGT CCACGGTGAC TTGAAGCTTG AAAACATCCT 50983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCATTCC TGTAAACCTC AGATGATTGT CCACGGTGAC TTGAAGCTTG AAAACATCCT 402 TTTAGATGCC AACCTGCACT GCAAGATAGC TGATTGTGGT ATTTCTCAAT TATTCATGGA 51043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGATGCC AACCTGCACT GCAAGATAGC TGATTGTGGT ATTTCTCAAT TATTCATGGA 462 AGATGCCAAG GACGCAGACC CGGAATACCG GAGAAGCAAA CCATTGACAC CCAAATCTGA 51103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCCAAG GACGCAGACC CGGAATACCG GAGAAGCAAA CCATTGACAC CCAAATCTGA 522 CATATACTCC TTTGGGATTG TGATACTCCA GTTACTAACT GGGAAGCAGG CTGCAGGCCT 51163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATACTCC TTTGGGATTG TGATACTCCA GTTACTAACT GGGAAGCAGG CTGCAGGCCT 582 TCCCAGCGAA GTAAGGCGTG CAATGTCCAG TGGAAAGCTA TGGTCATTGT TAGATCCAAC 51223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCAGCGAA GTAAGGCGTG CAATGTCCAG TGGAAAGCTA TGGTCATTGT TAGATCCAAC 642 AGCTGGAGAG TGGCCTCTGG AGGTGGCTCG AAGGTTAGCA GAGTTGGGGC TCAAGTGCAG 51283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGAGAG TGGCCTCTGG AGGTGGCTCG AAGGTTAGCA GAGTTGGGGC TCAAGTGCAG 702 TGAGGCAGCA AGTCCAGAGC TGCTGACTCC AGAAACTGTG CGAGATCTGG AACAGCTCCA 51343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCAGCA AGTCCAGAGC TGCTGACTCC AGAAACTGTG CGAGATCTGG AACAGCTCCA 762 CCTGATGAGG GATAATAGAC AAGTGCCCTC CTTCTTCCTG TGCCCGATCC TCAAGGCAAG 51403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CCTGATGAGG GATAATAGAC AAGTGCCCTC CTTCTTCCTG TGCCCGATCC TCAAG..... 817 AACGAAACCT AAGAACATCG ATAGGGCAGA AGCCCATAAG TAACCCAAAA TATCTACTAA 51463 .......... .......... .......... .......... .......... .......... 817 TAATAATGCG GTAGTAATGT GTTTTTTTTT TCATTCTAAT TTGTGCAGGA AGTGATGCAT 51523 || |||||||||| .......... .......... .......... .......... ........GA AGTGATGCAT 829 GATCCCCAGG TGGGGGCGGA CGGGTTGACG TACGAAGGGC GCGCCATTTC CGAGTTGATG 51583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCCCAGG TGGGGGCGGA CGGGTTGACG TACGAAGGGC GCGCCATTTC CGAGTTGATG 889 GACAATGGCC CTCCAATCAC CCCCAACCAC GCCCTTCGTT TTGCCATCCA TGACTGGCTC 51643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAATGGCC CTCCAATCAC CCCCAACCAC GCCCTTCGTT TTGCCATCCA TGACTGGCTC 949 TCTCAGAGAT CAACTCCTTT CTGATTTTCC CCAAGGATCT GGATTTTGTA TGTACACATT 51703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAGAGAT CAACTCCTTT CTGATTTTCC CCAAGGATCT GGATTTTGTA TGTACACATT 1009 GTTTATTTCA TAGTCAGTCT GTTTGTTAGT AGCACATGCA TGATGTAACG AAATAATAAT 51763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTATTTCA TAGTCAGTCT GTTTGTTAGT AGCACATGCA TGATGTAACG AAATAATAAT 1069 AGAGTAAATA TTTCAAGTTT CATGTATCGA GC 51795 |||||||||| |||||||||| |||||||||| || AGAGTAAATA TTTCAAGTTT CATGTATCGA GC 1101 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32970341|dbj|AK060323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-G11, full insert sequence 1 AAGAAGAGGC GGAGCTGGAT CGATCTATCG TTGAGTTGTT ATTGCCACAC AAACACAAAC 61 ACTGACGCCC ATGGCCTCCG ACGGCACCGA TGTCGTGGCG CTCTACGGCG GCGCCAATGG 121 CCTCTCGCAC AAGTCCGGTA GCTTCTCCGT CAAGGTGGGC CTCGCCCAGA TGCTGCGGGG 181 CGGCGTCATC ATGGACGTGG TCACCCCCGA ACAGGCGCGC ATCGCCGAGG AGGCCGGCGC 241 CTGCGCTGTG ATGGCGCTGG AGCGCGTCCC CGCCGACATC CGCGCCCAGG GCGGCGTCGC 301 CCGCATGTCC GACCCTGGCC TCATCCGCGA CATCAAGCGC TCCGTCACCA TCCCGGTCAT 361 GGCCAAGGCC CGCATCGGGC ACTTGGTGGA GGCCCAGATC CTGGAGGCCA TCGGCGTGGA 421 CTACGTGGAC GAGAGCGAGG TGCTCACCCT CGCCGACGAC GCCCACCACA TCAACAAGAA 481 CAACTTCCGC GTCCCCTTCG TGTGCGGCTG TCGCGACCTC GGCGAGGCGC TCCGCCGCAT 541 CCGGGAGGGC GCCGCCATGA TCCGCACCAA GGGCGAGGCC GGCACGGGCA ACGTCGTGGA 601 GGCCGTCCGC CACGTGCGCT CCGTGATGGG CGACATCCGC GCGCTCCGCA GCATGGACGA 661 CGACGAGGTC TTCTCCTACG CCAAGCGCAT CGCGGCGCCC TACGACCTGG TCATGCAGAC 721 CAAGCAGCTG GGGCGTCTCC CCGTCGTGCA GTTCGCGGCA GGTGGGGTGG CCACCCCCGC 781 CGACGCTGCC CTCATGATGC AGCTCGGCTG CGACGGCGTC TTCGTCGGCT CCGGCATCTT 841 CAAGAGCGGC GACCCCGCGC TGCGCGCCCG TGCCATCGTG CAGGCTGTCA CCCACTACAG 901 CGATCCCAAG ATTCTGGCGG AGGTCAGCAG TGGGCTCGGC GAGGCCATGG TTGGCATCAA 961 CCTCTCCGAC CCCAAGATAC ATGTCGAGCG CTTCGCCGCC CGCTCCGACT AGCTAGCAAC 1021 GTAGAGTGCC ATCCTTCCTT TCCGTCCCCT GCCACCACTG CCACCAATTC CTTCCTCATA 1081 ATTACTGCCA TATCTGTGAT CGATGGTTGT CATATATTGA AAATAAACAA CAAACATAGT 1141 GT Genomic Template: file=OSchr10, strand=-, from=61573, to=59832, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 61273 60132 (1142 n); cDNA 1 1142 (1142 n); score: 1.000 MATCH OSchr10-v3- 32970341+ 1.000 1142 1.000 C PGS_OSchr10-v3-_32970341+ (61273 60132) Alignment (genomic DNA sequence = upper lines): AAGAAGAGGC GGAGCTGGAT CGATCTATCG TTGAGTTGTT ATTGCCACAC AAACACAAAC 61214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGAGGC GGAGCTGGAT CGATCTATCG TTGAGTTGTT ATTGCCACAC AAACACAAAC 60 ACTGACGCCC ATGGCCTCCG ACGGCACCGA TGTCGTGGCG CTCTACGGCG GCGCCAATGG 61154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGACGCCC ATGGCCTCCG ACGGCACCGA TGTCGTGGCG CTCTACGGCG GCGCCAATGG 120 CCTCTCGCAC AAGTCCGGTA GCTTCTCCGT CAAGGTGGGC CTCGCCCAGA TGCTGCGGGG 61094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTCGCAC AAGTCCGGTA GCTTCTCCGT CAAGGTGGGC CTCGCCCAGA TGCTGCGGGG 180 CGGCGTCATC ATGGACGTGG TCACCCCCGA ACAGGCGCGC ATCGCCGAGG AGGCCGGCGC 61034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCGTCATC ATGGACGTGG TCACCCCCGA ACAGGCGCGC ATCGCCGAGG AGGCCGGCGC 240 CTGCGCTGTG ATGGCGCTGG AGCGCGTCCC CGCCGACATC CGCGCCCAGG GCGGCGTCGC 60974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCGCTGTG ATGGCGCTGG AGCGCGTCCC CGCCGACATC CGCGCCCAGG GCGGCGTCGC 300 CCGCATGTCC GACCCTGGCC TCATCCGCGA CATCAAGCGC TCCGTCACCA TCCCGGTCAT 60914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCATGTCC GACCCTGGCC TCATCCGCGA CATCAAGCGC TCCGTCACCA TCCCGGTCAT 360 GGCCAAGGCC CGCATCGGGC ACTTGGTGGA GGCCCAGATC CTGGAGGCCA TCGGCGTGGA 60854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCAAGGCC CGCATCGGGC ACTTGGTGGA GGCCCAGATC CTGGAGGCCA TCGGCGTGGA 420 CTACGTGGAC GAGAGCGAGG TGCTCACCCT CGCCGACGAC GCCCACCACA TCAACAAGAA 60794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACGTGGAC GAGAGCGAGG TGCTCACCCT CGCCGACGAC GCCCACCACA TCAACAAGAA 480 CAACTTCCGC GTCCCCTTCG TGTGCGGCTG TCGCGACCTC GGCGAGGCGC TCCGCCGCAT 60734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTTCCGC GTCCCCTTCG TGTGCGGCTG TCGCGACCTC GGCGAGGCGC TCCGCCGCAT 540 CCGGGAGGGC GCCGCCATGA TCCGCACCAA GGGCGAGGCC GGCACGGGCA ACGTCGTGGA 60674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGGAGGGC GCCGCCATGA TCCGCACCAA GGGCGAGGCC GGCACGGGCA ACGTCGTGGA 600 GGCCGTCCGC CACGTGCGCT CCGTGATGGG CGACATCCGC GCGCTCCGCA GCATGGACGA 60614 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCGTCCGC CACGTGCGCT CCGTGATGGG CGACATCCGC GCGCTCCGCA GCATGGACGA 660 CGACGAGGTC TTCTCCTACG CCAAGCGCAT CGCGGCGCCC TACGACCTGG TCATGCAGAC 60554 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACGAGGTC TTCTCCTACG CCAAGCGCAT CGCGGCGCCC TACGACCTGG TCATGCAGAC 720 CAAGCAGCTG GGGCGTCTCC CCGTCGTGCA GTTCGCGGCA GGTGGGGTGG CCACCCCCGC 60494 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCAGCTG GGGCGTCTCC CCGTCGTGCA GTTCGCGGCA GGTGGGGTGG CCACCCCCGC 780 CGACGCTGCC CTCATGATGC AGCTCGGCTG CGACGGCGTC TTCGTCGGCT CCGGCATCTT 60434 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACGCTGCC CTCATGATGC AGCTCGGCTG CGACGGCGTC TTCGTCGGCT CCGGCATCTT 840 CAAGAGCGGC GACCCCGCGC TGCGCGCCCG TGCCATCGTG CAGGCTGTCA CCCACTACAG 60374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAGCGGC GACCCCGCGC TGCGCGCCCG TGCCATCGTG CAGGCTGTCA CCCACTACAG 900 CGATCCCAAG ATTCTGGCGG AGGTCAGCAG TGGGCTCGGC GAGGCCATGG TTGGCATCAA 60314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCCCAAG ATTCTGGCGG AGGTCAGCAG TGGGCTCGGC GAGGCCATGG TTGGCATCAA 960 CCTCTCCGAC CCCAAGATAC ATGTCGAGCG CTTCGCCGCC CGCTCCGACT AGCTAGCAAC 60254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTCCGAC CCCAAGATAC ATGTCGAGCG CTTCGCCGCC CGCTCCGACT AGCTAGCAAC 1020 GTAGAGTGCC ATCCTTCCTT TCCGTCCCCT GCCACCACTG CCACCAATTC CTTCCTCATA 60194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGTGCC ATCCTTCCTT TCCGTCCCCT GCCACCACTG CCACCAATTC CTTCCTCATA 1080 ATTACTGCCA TATCTGTGAT CGATGGTTGT CATATATTGA AAATAAACAA CAAACATAGT 60134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACTGCCA TATCTGTGAT CGATGGTTGT CATATATTGA AAATAAACAA CAAACATAGT 1140 GT 60132 || GT 1142 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32994387|dbj|AK109178.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-A01, full insert sequence 1 TCCAAATTCA AAAGGTTACA CTAAGGTGAG ACTAATCACG GTGAATCTGG TTGACCGCCC 61 GTAACCGCGG GCACGGCTTT TCGAATAGTT TTGCTCTGAT CAGAGGTGTA CAATTGTACC 121 CACAAGACAC AGCCCCACGA CACGTTTTCG TGCGCCGACA TGCCACCACG ACATATCGGA 181 AAGAGGCCGT GACAGGACCC TTCGCATAAC CCCTCTCTAG CCAAGCACAC CACACCTCAG 241 GTTTCACCCC CGTCCCCAGC GGGCCACGGG CAGTCCCCTC TCGTGCCTAG GTGAATCCGG 301 AAGCGACAGA GGCCGTCGCA GGGCCCGCCC CGCTCCATCA CGCCCACCCT TGCCTGGATG 361 CGTCGACTAG AGGAAAGCTA CACTACAAGC CCAGCCGTTG CCCACGCTGG CTTGTGGTAA 421 GTACGATAAG TTCTTCCAGG GCATCCCGCG AACCGGTCCT TAACTGCCAT GGGTGCGACC 481 AGCAAAACCA TGCACCCACA GCCCACCATG TAGTTTATTT TAATTAACCC ACGCCAAAGC 541 GGTGGCACTA ATCCAACAGA ACCATTGGAA CCAACAGTCT AAACATTATT ATGCTTTTCC 601 CCATTGTGAA CTAGTTGAAC TAAGCATGTC TAAGCAATTC CTAGTCCAAA CTCTAATCAT 661 GTTATACCCC AAGCTAACAA GGGAGCATGG TATTC Genomic Template: file=OSchr10, strand=-, from=66201, to=64909, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 65901 65212 ( 690 n); cDNA 1 689 ( 689 n); score: 0.931 MATCH OSchr10-v3- 32994387+ 0.931 690 0.993 C PGS_OSchr10-v3-_32994387+ (65901 65212) Alignment (genomic DNA sequence = upper lines): TCCAGTTTCA AAAGATTACA CTAGGGTGAG ACTAATCACG GTGAATCTGG TTGACCGCCC 65842 |||| |||| |||| ||||| ||| |||||| |||||||||| |||||||||| |||||||||| TCCAAATTCA AAAGGTTACA CTAAGGTGAG ACTAATCACG GTGAATCTGG TTGACCGCCC 60 ATAACCGCGG GCACGGCTAT TCGAATAGTT TTACTCTGAT CAGAGGTGTA CAACTGTACC 65782 ||||||||| |||||||| | |||||||||| || ||||||| |||||||||| ||| |||||| GTAACCGCGG GCACGGCTTT TCGAATAGTT TTGCTCTGAT CAGAGGTGTA CAATTGTACC 120 CACAAGACAC AGCCCCACAA CACGTTTCCG TGCGCCGACA TGCCACCACG GCATATCAGA 65722 |||||||||| |||||||| | ||||||| || |||||||||| |||||||||| |||||| || CACAAGACAC AGCCCCACGA CACGTTTTCG TGCGCCGACA TGCCACCACG ACATATCGGA 180 AAGAGGCCGT GACAGGACCC TTCGCATAAC CCC-CTCTAG CCAAGCACAC CACACCTCAG 65663 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| AAGAGGCCGT GACAGGACCC TTCGCATAAC CCCTCTCTAG CCAAGCACAC CACACCTCAG 240 GTTTCACACC CACTCCTCGC AAGGCAGCGG GCAGTCCCCT CTCGTGCCTA GGTGAATCCG 65603 ||||||| || | ||| | ||| ||| |||||||||| |||||||||| |||||||||| GTTTCAC-CC CCGTCCCCAG CGGGCCACGG GCAGTCCCCT CTCGTGCCTA GGTGAATCCG 299 GAAGCGACAG AGGCCGTCGC AGGGCCCGCC CCGCTCCATC ACGCCCACCC TTGCCTGGAT 65543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCGACAG AGGCCGTCGC AGGGCCCGCC CCGCTCCATC ACGCCCACCC TTGCCTGGAT 359 GCGTCGACTA GAGGAAAGCT ATACTACAAG CCCAGCCGTT GCCCACGCTG GCTTGTGGTA 65483 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| GCGTCGACTA GAGGAAAGCT ACACTACAAG CCCAGCCGTT GCCCACGCTG GCTTGTGGTA 419 AGTACGATAA GTTCTTCCAG GGCATCCCGC GAACCGGTCC TTAACTGCCA TGGGTGCGAC 65423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACGATAA GTTCTTCCAG GGCATCCCGC GAACCGGTCC TTAACTGCCA TGGGTGCGAC 479 CAGCAAAACC ATGCACCCAC AGCCCACCAT GTGGTTTATT TTAATTAACC AACACCAAAG 65363 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| || |||||| CAGCAAAACC ATGCACCCAC AGCCCACCAT GTAGTTTATT TTAATTAACC CACGCCAAAG 539 CGGTGTCACT AATCCAACAA AACCATTAGA ACCAACAGTC TAAACGTTAA TAGGATTTTC 65303 ||||| |||| ||||||||| ||||||| || |||||||||| ||||| ||| || | ||||| CGGTGGCACT AATCCAACAG AACCATTGGA ACCAACAGTC TAAACATTAT TATGCTTTTC 599 CCCAATGTGA ACTAGTTGAA CTAAGCATGG CTAAGCAATC CCTAGTCCTA ACTCTAATCA 65243 |||| ||||| |||||||||| ||||||||| ||||||||| |||||||| | |||||||||| CCCATTGTGA ACTAGTTGAA CTAAGCATGT CTAAGCAATT CCTAGTCCAA ACTCTAATCA 659 TGTTAGAACC CCAAGTTGAC AAAGAAACAA G 65212 ||||| ||| ||||| | || || | | || | TGTTA-TACC CCAAGCTAAC AAGGGAGCAT G 689 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32978994|dbj|AK068970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001K01, full insert sequence 1 GGCAAGAAGT GGAGTACTCC TAGGAGAGAT CAGTCGTCCT GGACGCAGAA GATGGTGGGC 61 TTGACGGGCT CGGTGATCTC GACGGTGCCC TCGAGCATCT TGGCGACCTT GCCCATGGAG 121 GGCCTCATGT CGGCGCGGTC CTGAAGGCAC CACATGGCCG TCTTGACCAT GCGCTCGACG 181 GTGGCGAGGC TGGCGGGGTC GTCGTCGTAG GCCTCGGCCT GGACGATGCG AGGGTCGATG 241 ATGTCGTCGA TGCGGCGCTC GACGTAGACC TTCTCGAAGG CCCACTTGGG GAAGTACCAG 301 TCCTCGCTGC CGACGGAGTC CTGGCGGAAG CCGTAGTTGC GGCGGCCGGA GACGATCTCA 361 AGCAGAACCA TGCCGAAGCT GTAGACGTCG GCCTTGGCGG TGATGGGCTC GCGGTGGATG 421 ACCCACTCGG GGGCCATGTA CCCGCGGGTG CCACGGATGC GGGACATGGT CACCTTCTCC 481 TTCTTGCTGG TGAGCTTGGA CAGCCCGAAG TCGGACACCT TGGGGCAGAA GTCGTCCTCC 541 AGAAGGATGT TCTCAGGCTT GATGTCGCAG TGCAGAACCC ACTCGAGGCA CTCCTCGTGA 601 AGGTACGCGA TGGCGCGCGC CACGCCCAGA GCGATGCGGT AGCGGGTGTG CAGGTCAAGC 661 AGAGGCCGCT TGTTGCTCTC TTCTTCGTCT CCTTGGGTGC CGGTGCCTGG AGCGAACAGG 721 TACTTGTCCA GCGATCCGTT TGGCACATAC TCGTACACCA GCATCCTCTG CTCCTTGTCC 781 GCGCAGAACC CCCACATCCG CACCAGGTTG AGGTGGTGCA TCCGCGCGAT GATGGTCACC 841 TCCGCCCAGA ACTCCGCCTC TCCCCCGCCC ACCCCGTCCA GCTGCTTCAC TGCCACCGCC 901 CGCCGGTCCG GCAGCTCCCC GCGGTACACC TTCCCGTACG CCCCGCGCCC CACCAAGTCC 961 GAGAACTCCT TGGTCGCCGC CTTCAGCTCC GCGTACGAGA ACCGCCGCGG CCCGCCGGCG 1021 GGGAGGTACT CCAGCCCCAG CGTCCGCGCC ATCTCCCTGT ACTGCGAGTA CTTGCGCAGG 1081 AACGCCCAGA ACGACAGCAC CCCCGCCAGC AGCTCCACCG CGAACAGCGC CGTGATGATG 1141 GCGATGTTCC GGATCGTCGT CCGCCCCTGC TTCGGCGGCA CCGGCAGCGC CAGCCGCACC 1201 GGGCACACCG TGTCGATCAT CGTCGTCATC CCCGTGAAGT TGTTCGGGTC GTTGTTCGAC 1261 TCCACCACCC GCAGGTAGGT CGACATCTCC GTCGCCGGCG ACCAATAGCC GTCCACCAGC 1321 CGCGTGTAGT GCAGGCACGT CCGGTCCCCG CCCAACTTGT AGCCGAAGGC CACGCAAGAG 1381 GCGTTGGCCC GGCACTTGCT CTGGCAGTCC GCCAGGTTCT GCGGCGTCAG GCTGGTCATG 1441 TACTTGCCGG GGACGGACAC TCCGGTGTCG GCGCCACCGG AGAAGGAAAC GAAATCCATC 1501 CGCACGAACT TGTCGTCGTT GCCCTTGCCG CTGTAGTTAA GCTTGGGGGC GCAGCCCAGG 1561 CCCTGCGGGC GGTACCCCGG CGGGCAGACG CAGGTGGTGT TGTCGGCGCC TTGGGGGACG 1621 CAGATGTTGG CCTCCCCTTG GCAGGCGCCC CGGATGGTGC AGAGCTCCTG CACCAGCTGC 1681 CATACCACCC GCCACTGCCC TTTCTTGGAC TGCAGGCTGT AGAGGCGCAG GTTGCCGTCG 1741 TCGTCGAGGG TGAGGCGGCG CAGGCGGCGA GTGGAGCCCT GGTCGGAGGC GATGAGCTGG 1801 GAGGGATTGC CACCAGCGAG TTGCAGCGTG CCGTCGGCGG TGAGGTTGCG CAGGGCGGTG 1861 TTGCCGGTGA TGTTGGCGTA GGCGGAGGAG CCGTGCTGCA GGGTGAGGGC GTTGAACAGC 1921 TGGAATCTGC CGTTCTGGGA CTGCAGGGTG ATGCTGGTGG TGGTGGTGGT GCCGTTGCTA 1981 ATGCTGGGGA TGGCCTGCGA CGCCATCAGC GTGTCCGTCG GCTCCCCGAA GCTGGACCAG 2041 GCGCCGTGGT CGAGGCTCCC CGAGTCGTTC AGAGACAAAG GGGCACTCGT GGAGTTGAAG 2101 TTGCGGGACC AAAGGGTGGT GCTGTTGCCG TTGTCGCTCC ACGACAGCTT CCCCGCCGCG 2161 TCGATGGAGA GCACGGAATT GGCGTCGCCC TCCACGGCGG AGTGGTCGTC GTTGTGGGCG 2221 TACCATATGA CGACCGGCCT GGACTCGTTG GCGTTGGCGC TCACCCAGAC GGCGAACCAG 2281 AACTTGGCTG GGGAGGAGGG GGAGGGCCGG AATCCGGCGG CGAAGTCCCC GTTGTTGGAG 2341 ACGAGGGTGC GGTTGCTCTC GGCGGGGCTC CAATTGGTGT CGTTGGCGGA GAAGGTCCGC 2401 ATCTGCTGGG CCTGGGCCTG GGCGGCGGCG AGGGCCGGTA GGAGGAGGAG GAGGAGGACA 2461 GCGGCCGCCA TGGTTGTGCT TGCTGGATTG GGGAAGGGAA TTGGATTTCT TGCTTTTGGA 2521 TTTGGGATCG AACCGACGAC TCTCCTCACC TCGAGTCTAG TCAACAACAC TGTAGCCAAT 2581 TTGCCCATCA TGTAAATTGA ATATTCATTG CCTTGACTGT GGACTGGAAT TTCTTCTTC Genomic Template: file=OSchr10, strand=-, from=76768, to=73530, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 76468 73830 (2639 n); cDNA 1 2639 (2639 n); score: 1.000 MATCH OSchr10-v3- 32978994+ 1.000 2639 1.000 C PGS_OSchr10-v3-_32978994+ (76468 73830) Alignment (genomic DNA sequence = upper lines): GGCAAGAAGT GGAGTACTCC TAGGAGAGAT CAGTCGTCCT GGACGCAGAA GATGGTGGGC 76409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAAGAAGT GGAGTACTCC TAGGAGAGAT CAGTCGTCCT GGACGCAGAA GATGGTGGGC 60 TTGACGGGCT CGGTGATCTC GACGGTGCCC TCGAGCATCT TGGCGACCTT GCCCATGGAG 76349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACGGGCT CGGTGATCTC GACGGTGCCC TCGAGCATCT TGGCGACCTT GCCCATGGAG 120 GGCCTCATGT CGGCGCGGTC CTGAAGGCAC CACATGGCCG TCTTGACCAT GCGCTCGACG 76289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCTCATGT CGGCGCGGTC CTGAAGGCAC CACATGGCCG TCTTGACCAT GCGCTCGACG 180 GTGGCGAGGC TGGCGGGGTC GTCGTCGTAG GCCTCGGCCT GGACGATGCG AGGGTCGATG 76229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCGAGGC TGGCGGGGTC GTCGTCGTAG GCCTCGGCCT GGACGATGCG AGGGTCGATG 240 ATGTCGTCGA TGCGGCGCTC GACGTAGACC TTCTCGAAGG CCCACTTGGG GAAGTACCAG 76169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCGTCGA TGCGGCGCTC GACGTAGACC TTCTCGAAGG CCCACTTGGG GAAGTACCAG 300 TCCTCGCTGC CGACGGAGTC CTGGCGGAAG CCGTAGTTGC GGCGGCCGGA GACGATCTCA 76109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCGCTGC CGACGGAGTC CTGGCGGAAG CCGTAGTTGC GGCGGCCGGA GACGATCTCA 360 AGCAGAACCA TGCCGAAGCT GTAGACGTCG GCCTTGGCGG TGATGGGCTC GCGGTGGATG 76049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGAACCA TGCCGAAGCT GTAGACGTCG GCCTTGGCGG TGATGGGCTC GCGGTGGATG 420 ACCCACTCGG GGGCCATGTA CCCGCGGGTG CCACGGATGC GGGACATGGT CACCTTCTCC 75989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCACTCGG GGGCCATGTA CCCGCGGGTG CCACGGATGC GGGACATGGT CACCTTCTCC 480 TTCTTGCTGG TGAGCTTGGA CAGCCCGAAG TCGGACACCT TGGGGCAGAA GTCGTCCTCC 75929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTGCTGG TGAGCTTGGA CAGCCCGAAG TCGGACACCT TGGGGCAGAA GTCGTCCTCC 540 AGAAGGATGT TCTCAGGCTT GATGTCGCAG TGCAGAACCC ACTCGAGGCA CTCCTCGTGA 75869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGATGT TCTCAGGCTT GATGTCGCAG TGCAGAACCC ACTCGAGGCA CTCCTCGTGA 600 AGGTACGCGA TGGCGCGCGC CACGCCCAGA GCGATGCGGT AGCGGGTGTG CAGGTCAAGC 75809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTACGCGA TGGCGCGCGC CACGCCCAGA GCGATGCGGT AGCGGGTGTG CAGGTCAAGC 660 AGAGGCCGCT TGTTGCTCTC TTCTTCGTCT CCTTGGGTGC CGGTGCCTGG AGCGAACAGG 75749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGCCGCT TGTTGCTCTC TTCTTCGTCT CCTTGGGTGC CGGTGCCTGG AGCGAACAGG 720 TACTTGTCCA GCGATCCGTT TGGCACATAC TCGTACACCA GCATCCTCTG CTCCTTGTCC 75689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTGTCCA GCGATCCGTT TGGCACATAC TCGTACACCA GCATCCTCTG CTCCTTGTCC 780 GCGCAGAACC CCCACATCCG CACCAGGTTG AGGTGGTGCA TCCGCGCGAT GATGGTCACC 75629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCAGAACC CCCACATCCG CACCAGGTTG AGGTGGTGCA TCCGCGCGAT GATGGTCACC 840 TCCGCCCAGA ACTCCGCCTC TCCCCCGCCC ACCCCGTCCA GCTGCTTCAC TGCCACCGCC 75569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGCCCAGA ACTCCGCCTC TCCCCCGCCC ACCCCGTCCA GCTGCTTCAC TGCCACCGCC 900 CGCCGGTCCG GCAGCTCCCC GCGGTACACC TTCCCGTACG CCCCGCGCCC CACCAAGTCC 75509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGGTCCG GCAGCTCCCC GCGGTACACC TTCCCGTACG CCCCGCGCCC CACCAAGTCC 960 GAGAACTCCT TGGTCGCCGC CTTCAGCTCC GCGTACGAGA ACCGCCGCGG CCCGCCGGCG 75449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTCCT TGGTCGCCGC CTTCAGCTCC GCGTACGAGA ACCGCCGCGG CCCGCCGGCG 1020 GGGAGGTACT CCAGCCCCAG CGTCCGCGCC ATCTCCCTGT ACTGCGAGTA CTTGCGCAGG 75389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGGTACT CCAGCCCCAG CGTCCGCGCC ATCTCCCTGT ACTGCGAGTA CTTGCGCAGG 1080 AACGCCCAGA ACGACAGCAC CCCCGCCAGC AGCTCCACCG CGAACAGCGC CGTGATGATG 75329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGCCCAGA ACGACAGCAC CCCCGCCAGC AGCTCCACCG CGAACAGCGC CGTGATGATG 1140 GCGATGTTCC GGATCGTCGT CCGCCCCTGC TTCGGCGGCA CCGGCAGCGC CAGCCGCACC 75269 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGATGTTCC GGATCGTCGT CCGCCCCTGC TTCGGCGGCA CCGGCAGCGC CAGCCGCACC 1200 GGGCACACCG TGTCGATCAT CGTCGTCATC CCCGTGAAGT TGTTCGGGTC GTTGTTCGAC 75209 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCACACCG TGTCGATCAT CGTCGTCATC CCCGTGAAGT TGTTCGGGTC GTTGTTCGAC 1260 TCCACCACCC GCAGGTAGGT CGACATCTCC GTCGCCGGCG ACCAATAGCC GTCCACCAGC 75149 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCACCACCC GCAGGTAGGT CGACATCTCC GTCGCCGGCG ACCAATAGCC GTCCACCAGC 1320 CGCGTGTAGT GCAGGCACGT CCGGTCCCCG CCCAACTTGT AGCCGAAGGC CACGCAAGAG 75089 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGTGTAGT GCAGGCACGT CCGGTCCCCG CCCAACTTGT AGCCGAAGGC CACGCAAGAG 1380 GCGTTGGCCC GGCACTTGCT CTGGCAGTCC GCCAGGTTCT GCGGCGTCAG GCTGGTCATG 75029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTTGGCCC GGCACTTGCT CTGGCAGTCC GCCAGGTTCT GCGGCGTCAG GCTGGTCATG 1440 TACTTGCCGG GGACGGACAC TCCGGTGTCG GCGCCACCGG AGAAGGAAAC GAAATCCATC 74969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTGCCGG GGACGGACAC TCCGGTGTCG GCGCCACCGG AGAAGGAAAC GAAATCCATC 1500 CGCACGAACT TGTCGTCGTT GCCCTTGCCG CTGTAGTTAA GCTTGGGGGC GCAGCCCAGG 74909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCACGAACT TGTCGTCGTT GCCCTTGCCG CTGTAGTTAA GCTTGGGGGC GCAGCCCAGG 1560 CCCTGCGGGC GGTACCCCGG CGGGCAGACG CAGGTGGTGT TGTCGGCGCC TTGGGGGACG 74849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTGCGGGC GGTACCCCGG CGGGCAGACG CAGGTGGTGT TGTCGGCGCC TTGGGGGACG 1620 CAGATGTTGG CCTCCCCTTG GCAGGCGCCC CGGATGGTGC AGAGCTCCTG CACCAGCTGC 74789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATGTTGG CCTCCCCTTG GCAGGCGCCC CGGATGGTGC AGAGCTCCTG CACCAGCTGC 1680 CATACCACCC GCCACTGCCC TTTCTTGGAC TGCAGGCTGT AGAGGCGCAG GTTGCCGTCG 74729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACCACCC GCCACTGCCC TTTCTTGGAC TGCAGGCTGT AGAGGCGCAG GTTGCCGTCG 1740 TCGTCGAGGG TGAGGCGGCG CAGGCGGCGA GTGGAGCCCT GGTCGGAGGC GATGAGCTGG 74669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTCGAGGG TGAGGCGGCG CAGGCGGCGA GTGGAGCCCT GGTCGGAGGC GATGAGCTGG 1800 GAGGGATTGC CACCAGCGAG TTGCAGCGTG CCGTCGGCGG TGAGGTTGCG CAGGGCGGTG 74609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGATTGC CACCAGCGAG TTGCAGCGTG CCGTCGGCGG TGAGGTTGCG CAGGGCGGTG 1860 TTGCCGGTGA TGTTGGCGTA GGCGGAGGAG CCGTGCTGCA GGGTGAGGGC GTTGAACAGC 74549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCGGTGA TGTTGGCGTA GGCGGAGGAG CCGTGCTGCA GGGTGAGGGC GTTGAACAGC 1920 TGGAATCTGC CGTTCTGGGA CTGCAGGGTG ATGCTGGTGG TGGTGGTGGT GCCGTTGCTA 74489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAATCTGC CGTTCTGGGA CTGCAGGGTG ATGCTGGTGG TGGTGGTGGT GCCGTTGCTA 1980 ATGCTGGGGA TGGCCTGCGA CGCCATCAGC GTGTCCGTCG GCTCCCCGAA GCTGGACCAG 74429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTGGGGA TGGCCTGCGA CGCCATCAGC GTGTCCGTCG GCTCCCCGAA GCTGGACCAG 2040 GCGCCGTGGT CGAGGCTCCC CGAGTCGTTC AGAGACAAAG GGGCACTCGT GGAGTTGAAG 74369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCCGTGGT CGAGGCTCCC CGAGTCGTTC AGAGACAAAG GGGCACTCGT GGAGTTGAAG 2100 TTGCGGGACC AAAGGGTGGT GCTGTTGCCG TTGTCGCTCC ACGACAGCTT CCCCGCCGCG 74309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCGGGACC AAAGGGTGGT GCTGTTGCCG TTGTCGCTCC ACGACAGCTT CCCCGCCGCG 2160 TCGATGGAGA GCACGGAATT GGCGTCGCCC TCCACGGCGG AGTGGTCGTC GTTGTGGGCG 74249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATGGAGA GCACGGAATT GGCGTCGCCC TCCACGGCGG AGTGGTCGTC GTTGTGGGCG 2220 TACCATATGA CGACCGGCCT GGACTCGTTG GCGTTGGCGC TCACCCAGAC GGCGAACCAG 74189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCATATGA CGACCGGCCT GGACTCGTTG GCGTTGGCGC TCACCCAGAC GGCGAACCAG 2280 AACTTGGCTG GGGAGGAGGG GGAGGGCCGG AATCCGGCGG CGAAGTCCCC GTTGTTGGAG 74129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGGCTG GGGAGGAGGG GGAGGGCCGG AATCCGGCGG CGAAGTCCCC GTTGTTGGAG 2340 ACGAGGGTGC GGTTGCTCTC GGCGGGGCTC CAATTGGTGT CGTTGGCGGA GAAGGTCCGC 74069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAGGGTGC GGTTGCTCTC GGCGGGGCTC CAATTGGTGT CGTTGGCGGA GAAGGTCCGC 2400 ATCTGCTGGG CCTGGGCCTG GGCGGCGGCG AGGGCCGGTA GGAGGAGGAG GAGGAGGACA 74009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGCTGGG CCTGGGCCTG GGCGGCGGCG AGGGCCGGTA GGAGGAGGAG GAGGAGGACA 2460 GCGGCCGCCA TGGTTGTGCT TGCTGGATTG GGGAAGGGAA TTGGATTTCT TGCTTTTGGA 73949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGCCGCCA TGGTTGTGCT TGCTGGATTG GGGAAGGGAA TTGGATTTCT TGCTTTTGGA 2520 TTTGGGATCG AACCGACGAC TCTCCTCACC TCGAGTCTAG TCAACAACAC TGTAGCCAAT 73889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGGATCG AACCGACGAC TCTCCTCACC TCGAGTCTAG TCAACAACAC TGTAGCCAAT 2580 TTGCCCATCA TGTAAATTGA ATATTCATTG CCTTGACTGT GGACTGGAAT TTCTTCTTC 73830 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTGCCCATCA TGTAAATTGA ATATTCATTG CCTTGACTGT GGACTGGAAT TTCTTCTTC 2639 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|37991481|dbj|AK121858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102I19, full insert sequence 1 GAATTCCCTT CCCCAATCCA GCAAGCACAA CCATGGCGGC CGCTGTCCTC CTCCTCCTCC 61 TCCTACCGGC CCTCGCCGCC GCCCAGGCCC AGGCCCAGCA GATGCGGACC TTCTCCGCCA 121 ACGACACCAA TTGGAGCCCC GCCGAGAGCA ACCGCACCCT CGTCTCCAAC AACGGGGACT 181 TCGCCGCCGG ATTCCGGCCC TCCCCCTCCT CCCCAGCCAA GTTCTGGTTC GCCGTCTGGG 241 TGAGCGCCAA CGCCAACGAG TCCAGGCCGG TCGTCATATG GTACGCCCAC AACGACGACC 301 ACTCCGCCGT GGAGGGCGAC GCCAATTCCG TGCTCTCCAT CGACGCGGCG GGGAAGCTGT 361 CGTGGAGCGA CAACGGCAAC AGCACCACCC TTTGGTCCCG CAACTTCAAC TCCACGAGTG 421 CCCCTTTGTC TCTGAACGAC TCGGGGAGCC TCGACCACGG CGCCTGGTCC AGCTTCGGGG 481 AGCCGACGGA CACGCTGATG GCGTCGCAGG CCATCCCCAG CATTAGCAAC GGCACCACCA 541 CCACCACCAG CATCACCCTG CAGTCCCAGA ACGGCAGATT CCAGCTGTTC AACGCCCTCA 601 CCCTGCAGCA CGGCTCCTCC GCCTACGCCA ACATCACCGG CAACACCGCC CTGCGCAACC 661 TCACCGCCGA CGGCACGCTG CAACTCGCTG GTGGCAATCC CTCCCAGCTC ATCGCCTCCG 721 ACCAGGGCTC CACTCGCCGC CTGCGCCGCC TCACCCTCGA CGACGACGGC AACCTGCGCC 781 TCTACAGCCT GCAGTCCAAG AAAGGGCAGT GGCGGGTGGT ATGGCAGCTG GTGCAGGAGC 841 TCTGCACCAT CCGGGGCGCC TGCCAAGGGG AGGCCAACAT CTGCGTCCCC CAAGGCGCCG 901 ACAACACCAC CTGCGTCTGC CCGCCGGGGT ACCGCCCGCA GGGCCTGGGC TGCGCCCCCA 961 AGCTTAACTA CAGCGGCAAG GGCAACGACG ACAAGTTCGT GCGGATGGAT TTCGTTTCCT 1021 TCTCCGGTGG CGCCGACACC GGAGTGTCCG TCCCCGGCAA GTACATGACC AGCCTGACGC 1081 CGCAGAACCT GGCGGACTGC CAGAGCAAGT GCCGGGCCAA CGCCTCTTGC GTGGCCTTCG 1141 GCTACAAGTT GGGCGGGGAC CGGACGTGCC TGCACTACAC GCGGCTGGTG GACGGCTATT 1201 GGTCGCCGGC GACGGAGATG TCGACCTACC TGCGGGTGGT GGAGTCGAAC AACGACCCGA 1261 ACAACTTCAC GGGGATGACG ACGATGATCG ACACGGTGTG CCCGGTGCGG CTGGCGCTGC 1321 CGGTGCCGCC GAAGCAGGGG CGGACGACGA TCCGGAACAT CGCCATCATC ACGGCGCTGT 1381 TCGCGGTGGA GCTGCTGGCG GGGGTGCTGT CGTTCTGGGC GTTCCTGCGC AAGTACTCGC 1441 AGTACAGGGA GATGGCGCGG ACGCTGGGGC TGGAGTACCT CCCCGCCGGC GGGCCGCGGC 1501 GGTTCTCGTA CGCGGAGCTG AAGGCGGCGA CCAAGGAGTT CTCGGACTTG GTGGGGCGCG 1561 GGGCGTACGG GAAGGTGTAC CGCGGGGAGC TGCCGGACCG GCGGGCGGTG GCAGTGAAGC 1621 AGCTGGACGG GGTGGGCGGG GGAGAGGCGG AGTTCTGGGC GGAGGTGACC ATCATCGCGC 1681 GGATGCACCA CCTCAACCTG GTGCGGATGT GGGGGTTCTG CGCGGACAAG GAGCAGAGGA 1741 TGCTGGTGCA CGAGTATGTG CCAAACGGAT CGCTGGACAA GTACCTGTTC GCTCCAGGCA 1801 CCGGCACCCA AGGAGACGAA GAAGAGAGCA ACAAGCGGCC TCTGCTTGAC CTGCACACCC 1861 GCTACCGCAT CGCTCTGGGC GTGGCGCGCG CCATCGCGTA CCTTCACGAG GAGTGCCTCG 1921 AGTGGGTTCT GCACTGCGAC ATCAAGCCTG AGAACATCCT TCTGGAGGAC GACTTCTGCC 1981 CCAAGGTGTC CGACTTCGGG CTGTCCAAGC TCACCAGCAA GAAGGAGAAG GTGACCATGT 2041 CCCGCATCCG TGGCACCCGC GGGTACATGG CCCCCGAGTG GGTCATCCAC CGCGAGCCCA 2101 TCACCGCCAA GGCCGACGTC TACAGCTTCG GCATGGTTCT GCTTGAGATC GTCTCCGGCC 2161 GCCGCAACTA CGGCTTCCGC CAGGACTCCG TCGGCAGCGA GGACTGGTAC TTCCCCAAGT 2221 GGGCCTTCGA GAAGGTCTAC GTCGAGCGCC GCATCGACGA CATCATCGAC CCTCGCATCG 2281 TCCAGGCCGA GGCCTACGAC GACGACCCCG CCAGCCTCGC CACCGTCGAG CGCATGGTCA 2341 AGACGGCCAT GTGGTGCCTT CAGGACCGCG CCGACATGAG GCCCTCCATG GGCAAGGTCG 2401 CCAAGATGCT CGAGGGCACC GTCGAGATCA CCGAGCCCGT CAAGCCCACC ATCTTCTGCG 2461 TCCAGGACGA CTGATCTCTC CTAGGAGTAC TCCACTTCTT GCCACGAGAG ACACACAAAT 2521 TATCTTTCTT ATTTATTATA CTAGTACTAG TTCAGATCAG ATCAGAGCAG AGCACTGCAT 2581 ATCCTGCGTT GTCTGATTTG CCTGCTGGGC TCACGACAGC AACTGAGCAA GGCAAATGTA 2641 CATGATGAGT GGATTACGCT TCAAAATGAT ACGCACCATC AAATTCGTCG GCATCTCTCT 2701 CGTAGGCTCA GCGCAGATAT CATGACATAT ATTTACCTTT TTTTTATTAG TAAATTTCAT 2761 AAAACTACAT ATACTTTGAC TAAATTATCA TAAAACTACA TATTTAAGGT C Genomic Template: file=OSchr10, strand=+, from=73667, to=77076, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 73966 76776 (2811 n); cDNA 1 2811 (2811 n); score: 0.999 MATCH OSchr10-v3+ 37991481+ 0.999 2811 1.000 C PGS_OSchr10-v3+_37991481+ (73966 76776) Alignment (genomic DNA sequence = upper lines): CAATTCCCTT CCCCAATCCA GCAAGCACAA CCATGGCGGC CGCTGTCCTC CTCCTCCTCC 74025 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTCCCTT CCCCAATCCA GCAAGCACAA CCATGGCGGC CGCTGTCCTC CTCCTCCTCC 60 TCCTACCGGC CCTCGCCGCC GCCCAGGCCC AGGCCCAGCA GATGCGGACC TTCTCCGCCA 74085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTACCGGC CCTCGCCGCC GCCCAGGCCC AGGCCCAGCA GATGCGGACC TTCTCCGCCA 120 ACGACACCAA TTGGAGCCCC GCCGAGAGCA ACCGCACCCT CGTCTCCAAC AACGGGGACT 74145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGACACCAA TTGGAGCCCC GCCGAGAGCA ACCGCACCCT CGTCTCCAAC AACGGGGACT 180 TCGCCGCCGG ATTCCGGCCC TCCCCCTCCT CCCCAGCCAA GTTCTGGTTC GCCGTCTGGG 74205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGCCGG ATTCCGGCCC TCCCCCTCCT CCCCAGCCAA GTTCTGGTTC GCCGTCTGGG 240 TGAGCGCCAA CGCCAACGAG TCCAGGCCGG TCGTCATATG GTACGCCCAC AACGACGACC 74265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGCGCCAA CGCCAACGAG TCCAGGCCGG TCGTCATATG GTACGCCCAC AACGACGACC 300 ACTCCGCCGT GGAGGGCGAC GCCAATTCCG TGCTCTCCAT CGACGCGGCG GGGAAGCTGT 74325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCCGCCGT GGAGGGCGAC GCCAATTCCG TGCTCTCCAT CGACGCGGCG GGGAAGCTGT 360 CGTGGAGCGA CAACGGCAAC AGCACCACCC TTTGGTCCCG CAACTTCAAC TCCACGAGTG 74385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGAGCGA CAACGGCAAC AGCACCACCC TTTGGTCCCG CAACTTCAAC TCCACGAGTG 420 CCCCTTTGTC TCTGAACGAC TCGGGGAGCC TCGACCACGG CGCCTGGTCC AGCTTCGGGG 74445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCTTTGTC TCTGAACGAC TCGGGGAGCC TCGACCACGG CGCCTGGTCC AGCTTCGGGG 480 AGCCGACGGA CACGCTGATG GCGTCGCAGG CCATCCCCAG CATTAGCAAC GGCACCACCA 74505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCGACGGA CACGCTGATG GCGTCGCAGG CCATCCCCAG CATTAGCAAC GGCACCACCA 540 CCACCACCAG CATCACCCTG CAGTCCCAGA ACGGCAGATT CCAGCTGTTC AACGCCCTCA 74565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCACCAG CATCACCCTG CAGTCCCAGA ACGGCAGATT CCAGCTGTTC AACGCCCTCA 600 CCCTGCAGCA CGGCTCCTCC GCCTACGCCA ACATCACCGG CAACACCGCC CTGCGCAACC 74625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTGCAGCA CGGCTCCTCC GCCTACGCCA ACATCACCGG CAACACCGCC CTGCGCAACC 660 TCACCGCCGA CGGCACGCTG CAACTCGCTG GTGGCAATCC CTCCCAGCTC ATCGCCTCCG 74685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCGCCGA CGGCACGCTG CAACTCGCTG GTGGCAATCC CTCCCAGCTC ATCGCCTCCG 720 ACCAGGGCTC CACTCGCCGC CTGCGCCGCC TCACCCTCGA CGACGACGGC AACCTGCGCC 74745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGGGCTC CACTCGCCGC CTGCGCCGCC TCACCCTCGA CGACGACGGC AACCTGCGCC 780 TCTACAGCCT GCAGTCCAAG AAAGGGCAGT GGCGGGTGGT ATGGCAGCTG GTGCAGGAGC 74805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTACAGCCT GCAGTCCAAG AAAGGGCAGT GGCGGGTGGT ATGGCAGCTG GTGCAGGAGC 840 TCTGCACCAT CCGGGGCGCC TGCCAAGGGG AGGCCAACAT CTGCGTCCCC CAAGGCGCCG 74865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCACCAT CCGGGGCGCC TGCCAAGGGG AGGCCAACAT CTGCGTCCCC CAAGGCGCCG 900 ACAACACCAC CTGCGTCTGC CCGCCGGGGT ACCGCCCGCA GGGCCTGGGC TGCGCCCCCA 74925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACACCAC CTGCGTCTGC CCGCCGGGGT ACCGCCCGCA GGGCCTGGGC TGCGCCCCCA 960 AGCTTAACTA CAGCGGCAAG GGCAACGACG ACAAGTTCGT GCGGATGGAT TTCGTTTCCT 74985 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTAACTA CAGCGGCAAG GGCAACGACG ACAAGTTCGT GCGGATGGAT TTCGTTTCCT 1020 TCTCCGGTGG CGCCGACACC GGAGTGTCCG TCCCCGGCAA GTACATGACC AGCCTGACGC 75045 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCCGGTGG CGCCGACACC GGAGTGTCCG TCCCCGGCAA GTACATGACC AGCCTGACGC 1080 CGCAGAACCT GGCGGACTGC CAGAGCAAGT GCCGGGCCAA CGCCTCTTGC GTGGCCTTCG 75105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCAGAACCT GGCGGACTGC CAGAGCAAGT GCCGGGCCAA CGCCTCTTGC GTGGCCTTCG 1140 GCTACAAGTT GGGCGGGGAC CGGACGTGCC TGCACTACAC GCGGCTGGTG GACGGCTATT 75165 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACAAGTT GGGCGGGGAC CGGACGTGCC TGCACTACAC GCGGCTGGTG GACGGCTATT 1200 GGTCGCCGGC GACGGAGATG TCGACCTACC TGCGGGTGGT GGAGTCGAAC AACGACCCGA 75225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCGCCGGC GACGGAGATG TCGACCTACC TGCGGGTGGT GGAGTCGAAC AACGACCCGA 1260 ACAACTTCAC GGGGATGACG ACGATGATCG ACACGGTGTG CCCGGTGCGG CTGGCGCTGC 75285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACTTCAC GGGGATGACG ACGATGATCG ACACGGTGTG CCCGGTGCGG CTGGCGCTGC 1320 CGGTGCCGCC GAAGCAGGGG CGGACGACGA TCCGGAACAT CGCCATCATC ACGGCGCTGT 75345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGCCGCC GAAGCAGGGG CGGACGACGA TCCGGAACAT CGCCATCATC ACGGCGCTGT 1380 TCGCGGTGGA GCTGCTGGCG GGGGTGCTGT CGTTCTGGGC GTTCCTGCGC AAGTACTCGC 75405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCGGTGGA GCTGCTGGCG GGGGTGCTGT CGTTCTGGGC GTTCCTGCGC AAGTACTCGC 1440 AGTACAGGGA GATGGCGCGG ACGCTGGGGC TGGAGTACCT CCCCGCCGGC GGGCCGCGGC 75465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAGGGA GATGGCGCGG ACGCTGGGGC TGGAGTACCT CCCCGCCGGC GGGCCGCGGC 1500 GGTTCTCGTA CGCGGAGCTG AAGGCGGCGA CCAAGGAGTT CTCGGACTTG GTGGGGCGCG 75525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCTCGTA CGCGGAGCTG AAGGCGGCGA CCAAGGAGTT CTCGGACTTG GTGGGGCGCG 1560 GGGCGTACGG GAAGGTGTAC CGCGGGGAGC TGCCGGACCG GCGGGCGGTG GCAGTGAAGC 75585 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCGTACGG GAAGGTGTAC CGCGGGGAGC TGCCGGACCG GCGGGCGGTG GCAGTGAAGC 1620 AGCTGGACGG GGTGGGCGGG GGAGAGGCGG AGTTCTGGGC GGAGGTGACC ATCATCGCGC 75645 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGACGG GGTGGGCGGG GGAGAGGCGG AGTTCTGGGC GGAGGTGACC ATCATCGCGC 1680 GGATGCACCA CCTCAACCTG GTGCGGATGT GGGGGTTCTG CGCGGACAAG GAGCAGAGGA 75705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGCACCA CCTCAACCTG GTGCGGATGT GGGGGTTCTG CGCGGACAAG GAGCAGAGGA 1740 TGCTGGTGTA CGAGTATGTG CCAAACGGAT CGCTGGACAA GTACCTGTTC GCTCCAGGCA 75765 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGGTGCA CGAGTATGTG CCAAACGGAT CGCTGGACAA GTACCTGTTC GCTCCAGGCA 1800 CCGGCACCCA AGGAGACGAA GAAGAGAGCA ACAAGCGGCC TCTGCTTGAC CTGCACACCC 75825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGCACCCA AGGAGACGAA GAAGAGAGCA ACAAGCGGCC TCTGCTTGAC CTGCACACCC 1860 GCTACCGCAT CGCTCTGGGC GTGGCGCGCG CCATCGCGTA CCTTCACGAG GAGTGCCTCG 75885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACCGCAT CGCTCTGGGC GTGGCGCGCG CCATCGCGTA CCTTCACGAG GAGTGCCTCG 1920 AGTGGGTTCT GCACTGCGAC ATCAAGCCTG AGAACATCCT TCTGGAGGAC GACTTCTGCC 75945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGGTTCT GCACTGCGAC ATCAAGCCTG AGAACATCCT TCTGGAGGAC GACTTCTGCC 1980 CCAAGGTGTC CGACTTCGGG CTGTCCAAGC TCACCAGCAA GAAGGAGAAG GTGACCATGT 76005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGGTGTC CGACTTCGGG CTGTCCAAGC TCACCAGCAA GAAGGAGAAG GTGACCATGT 2040 CCCGCATCCG TGGCACCCGC GGGTACATGG CCCCCGAGTG GGTCATCCAC CGCGAGCCCA 76065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCGCATCCG TGGCACCCGC GGGTACATGG CCCCCGAGTG GGTCATCCAC CGCGAGCCCA 2100 TCACCGCCAA GGCCGACGTC TACAGCTTCG GCATGGTTCT GCTTGAGATC GTCTCCGGCC 76125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCGCCAA GGCCGACGTC TACAGCTTCG GCATGGTTCT GCTTGAGATC GTCTCCGGCC 2160 GCCGCAACTA CGGCTTCCGC CAGGACTCCG TCGGCAGCGA GGACTGGTAC TTCCCCAAGT 76185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGCAACTA CGGCTTCCGC CAGGACTCCG TCGGCAGCGA GGACTGGTAC TTCCCCAAGT 2220 GGGCCTTCGA GAAGGTCTAC GTCGAGCGCC GCATCGACGA CATCATCGAC CCTCGCATCG 76245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCCTTCGA GAAGGTCTAC GTCGAGCGCC GCATCGACGA CATCATCGAC CCTCGCATCG 2280 TCCAGGCCGA GGCCTACGAC GACGACCCCG CCAGCCTCGC CACCGTCGAG CGCATGGTCA 76305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGGCCGA GGCCTACGAC GACGACCCCG CCAGCCTCGC CACCGTCGAG CGCATGGTCA 2340 AGACGGCCAT GTGGTGCCTT CAGGACCGCG CCGACATGAG GCCCTCCATG GGCAAGGTCG 76365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACGGCCAT GTGGTGCCTT CAGGACCGCG CCGACATGAG GCCCTCCATG GGCAAGGTCG 2400 CCAAGATGCT CGAGGGCACC GTCGAGATCA CCGAGCCCGT CAAGCCCACC ATCTTCTGCG 76425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGATGCT CGAGGGCACC GTCGAGATCA CCGAGCCCGT CAAGCCCACC ATCTTCTGCG 2460 TCCAGGACGA CTGATCTCTC CTAGGAGTAC TCCACTTCTT GCCACGAGAG ACACACAAAT 76485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGGACGA CTGATCTCTC CTAGGAGTAC TCCACTTCTT GCCACGAGAG ACACACAAAT 2520 TATCTTTCTT ATTTATTATA CTAGTACTAG TTCAGATCAG ATCAGAGCAG AGCACTGCAT 76545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTTTCTT ATTTATTATA CTAGTACTAG TTCAGATCAG ATCAGAGCAG AGCACTGCAT 2580 ATCCTGCGTT GTCTGATTTG CCTGCTGGGC TCACGACAGC AACTGAGCAA GGCAAATGTA 76605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTGCGTT GTCTGATTTG CCTGCTGGGC TCACGACAGC AACTGAGCAA GGCAAATGTA 2640 CATGATGAGT GGATTACGCT TCAAAATGAT ACGCACCATC AAATTCGTCG GCATCTCTCT 76665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGATGAGT GGATTACGCT TCAAAATGAT ACGCACCATC AAATTCGTCG GCATCTCTCT 2700 CGTAGGCTCA GCGCAGATAT CATGACATAT ATTTACCTTT TTTTTATTAG TAAATTTCAT 76725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTAGGCTCA GCGCAGATAT CATGACATAT ATTTACCTTT TTTTTATTAG TAAATTTCAT 2760 AAAACTACAT ATACTTTGAC TAAATTATCA TAAAACTACA TATTTAAGGT C 76776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AAAACTACAT ATACTTTGAC TAAATTATCA TAAAACTACA TATTTAAGGT C 2811 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32991876|dbj|AK106667.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H08, full insert sequence 1 AAAACGTGAG GGATGAAGGA CAAGGACAAG AAATAGGTGA AGCTATCTAC TTCTCGATGC 61 ATCTATGTAC GGAGGCGGCG GTAACACGGC GGCGGCTGCT GCTGCTTCTT CTTCTCCTGG 121 TCACCTGCAG CTGCCTGTCT GCGAGAGAGA GAAGCAATAG CAGCAGCAGC AGCAGCAGGA 181 GAGTGGTGAG GCATCTCCCG GGGTTCGATG GGGCGCTCCC CTTCGAGCTG GAGACCGGGT 241 ACGTGGAGGT GGACCGCATC GCCGGCGTGC GCCTCTTCTA CTACTTCATC CGCTCGGAGA 301 GCAGCCCGGC CGACGATCCC CTCTTGCTCT GGCTCACCGG CGGGCCAGGC TGCTCGGCCT 361 TCTCCGGCCT CGTCTACGAG GTCGGACCCC TCACCTTCGA TGTCCATGGC CATGGACATG 421 GACAACTGCC AAGGCTCTTG TACAAGCCGG AGTCGTGGAC CAAACGTACC AACGTCATCT 481 TCCTCGACTC CCCTGTCGGA ACTGGCTTTT CCTACGCTGA CACCGACGCC GGATTCCGCA 541 CCGGCGATAC CATTGCTGTC CACCACATTC ACGTCTTCCT CAACAACTGG TTTCAGGAGG 601 TGCACCCCGA TTTCCTCTCC AATCCTCTAT ACATCGCCGG CGACTCCTAC TCTGGGATGA 661 TTGTGCCGGC TGTCACCTTC GGAATCGCCA CTTCATCACC CAAACCATCT CTCAATCTCA 721 AGGGCTACCT TTTGGGCAAT CCAGTCACTG ATCACAACTT CGATGCTCCA TCCAAAATTC 781 CATTTGCCCA TGGGATGGGT CTCATATCTG ACCAACTGTA TCAGGCATAC AAGAAGAGCT 841 GCAGTGTCAA GCACAACACC CAGCAGCAAA GCGTTCAGTG CACAAATACT CTTGATGCCA 901 TAGATGAGTG TGTCAAGGAC ATATACGGAA ATCACATTCT GGAGCCTTAC TGCACTTTTG 961 CAAGCCCGCA TAATCCGCGC ATCGATAAGC CATTCACTTC AGGGACGGCA GAATATACAA 1021 TGTCCAGAAT ATGGGCCAAC AATGATACAG TAAGAGAGGC CCTTGGAATT CACCAGGGAA 1081 CAGTTCCTTC GTGGCAAAGA TGCAACTACG ACATTCTGTA CACTTATGAC ATCAAAAGTT 1141 CAGTAAGATA CCATCTGGAT TTGACAACTA GAGGCTACAG AAGCCTAATT TACAGTGGTG 1201 ATCATGACAT GATTATCCCT TTCATCGGCA CGCAAGCCTG GATTAGATCT CTGAATTTCT 1261 CTGTCGTGGA TGAGTGGAGA CCATGGTTTG TGGATGGACA AGTTGCAGGA TATATAAGGT 1321 CATACTCCAA TAACCTCACA TTCGCAACTG TCAAGGGTGG TGGACATACT GCTCCAGAAT 1381 ACATGCCAAA GCAATGCCTT GCTATGCTTG CAAGGTGGGT TTCTGGCAAT CCTCTTTGAC 1441 GATGGTGCAT ATATGTGTAA GAGAAAATTC CAGGATGGAG ATATTACATC ACAAGAAATT 1501 TATGATTTTG CTAAAATTGT GGCGACATTT TTTTCCCCAT CACGGTTGAA TGCTTTTCTC 1561 TTGGGTTGCG GCGGAGACTA TACTCGCGCG TGTATTATAT ATGTCTGTTT CTTCACGAAG 1621 TGCATGAAGA TTTGTCCCAT GTGTAAGATC TGGAGAGTGA GAACAAAACA TGGTTCAATA 1681 CAGTGCAAAT GATGGATCGA AGAGCATACT CCTACACGTC AATGTAAATA GACATGTAAC 1741 ATTTTATTAC GCCGTCAGTG TGGCCCCCAG TTTTGTACAC CGGAAATCCA ATGTGTTTTA 1801 CGATATCATT CTCTGAATCA TCAGTACTTA TTTGTAT Genomic Template: file=OSchr10, strand=-, from=82703, to=79167, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 82403 81682 ( 722 n); cDNA 1 722 ( 722 n); score: 0.999 Intron 1 81681 81606 ( 76 n); Pd: 0.995 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 2 81605 81504 ( 102 n); cDNA 723 824 ( 102 n); score: 1.000 Intron 2 81503 81412 ( 92 n); Pd: 0.985 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 3 81411 81328 ( 84 n); cDNA 825 908 ( 84 n); score: 1.000 Intron 3 81327 81229 ( 99 n); Pd: 1.000 (s: 1.00), Pa: 0.950 (s: 1.00) Exon 4 81228 81133 ( 96 n); cDNA 909 1004 ( 96 n); score: 1.000 Intron 4 81132 80835 ( 298 n); Pd: 0.865 (s: 1.00), Pa: 0.964 (s: 1.00) Exon 5 80834 80763 ( 72 n); cDNA 1005 1076 ( 72 n); score: 1.000 Intron 5 80762 80640 ( 123 n); Pd: 0.999 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 6 80639 80407 ( 233 n); cDNA 1077 1309 ( 233 n); score: 1.000 Intron 6 80406 80302 ( 105 n); Pd: 0.866 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 7 80301 80256 ( 46 n); cDNA 1310 1355 ( 46 n); score: 1.000 Intron 7 80255 79949 ( 307 n); Pd: 0.970 (s: 1.00), Pa: 0.867 (s: 1.00) Exon 8 79948 79467 ( 482 n); cDNA 1356 1837 ( 482 n); score: 1.000 MATCH OSchr10-v3- 32991876+ 0.999 1791 0.975 C PGS_OSchr10-v3-_32991876+ (82403 81682,81605 81504,81411 81328,81228 81133,80834 80763,80639 80407,80301 80256,79948 79467) Alignment (genomic DNA sequence = upper lines): AAAACGTGAG GGATGAAGGA CAAGGACAAG AAATAGGTGA AGCTATCTAC TTCTCGATGC 82344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACGTGAG GGATGAAGGA CAAGGACAAG AAATAGGTGA AGCTATCTAC TTCTCGATGC 60 ATCTATGTAC GGAGGCGGCG GTAACACGGC GGCGGCTGCT GCTGCTTCTT CTTCTCCTGG 82284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTATGTAC GGAGGCGGCG GTAACACGGC GGCGGCTGCT GCTGCTTCTT CTTCTCCTGG 120 TCACCTGCAG CTGCCTGTCT GCGAGAGAGA GAAGCAATAG CAGCAGCAGC AGCAGCAGGA 82224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCTGCAG CTGCCTGTCT GCGAGAGAGA GAAGCAATAG CAGCAGCAGC AGCAGCAGGA 180 GAGTGGTGAG GCATCTCCCG GGGTTCGATG GGGCGCTCCC CTTCGAGCTG GAGACCGGGT 82164 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGGTGAG GCATCTCCCG GGGTTCGATG GGGCGCTCCC CTTCGAGCTG GAGACCGGGT 240 ACGTGGAGGT GGACCGCATC GCCGGCGTGC GCCTCTTCTA CTACTTCATC CGCTCGGAGA 82104 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGGAGGT GGACCGCATC GCCGGCGTGC GCCTCTTCTA CTACTTCATC CGCTCGGAGA 300 GCAGCCCGGC CGACGATCCC CTCTTGCTCT GGCTCACCGG CGGGCCAGGC TGCTCGGCCT 82044 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCCCGGC CGACGATCCC CTCTTGCTCT GGCTCACCGG CGGGCCAGGC TGCTCGGCCT 360 TCTCCGGCCT CGTCTACGAG GTCGGACCCC TCACCTTCGA TGTCCATGGC CATGGACATG 81984 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCCGGCCT CGTCTACGAG GTCGGACCCC TCACCTTCGA TGTCCATGGC CATGGACATG 420 GACAACTGCC AAGGCTCTTG TACAAGCCGG AGTCGTGGAC CAAACGTACC AACGTCATCT 81924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAACTGCC AAGGCTCTTG TACAAGCCGG AGTCGTGGAC CAAACGTACC AACGTCATCT 480 TCCTCGACTC CCCTGTCGGA ACTGGCTTTT CCTACGCTGA CACCGACGCC GGATTCCGCA 81864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCGACTC CCCTGTCGGA ACTGGCTTTT CCTACGCTGA CACCGACGCC GGATTCCGCA 540 CCGGCGATAC CATTGCTGTC CACCACATTC TCGTCTTCCT CAACAACTGG TTTCAGGAGG 81804 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CCGGCGATAC CATTGCTGTC CACCACATTC ACGTCTTCCT CAACAACTGG TTTCAGGAGG 600 TGCACCCCGA TTTCCTCTCC AATCCTCTAT ACATCGCCGG CGACTCCTAC TCTGGGATGA 81744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACCCCGA TTTCCTCTCC AATCCTCTAT ACATCGCCGG CGACTCCTAC TCTGGGATGA 660 TTGTGCCGGC TGTCACCTTC GGAATCGCCA CTTCATCACC CAAACCATCT CTCAATCTCA 81684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGCCGGC TGTCACCTTC GGAATCGCCA CTTCATCACC CAAACCATCT CTCAATCTCA 720 AGGTACTAGC TACTTTTAAA GATACAAATA GGAGTACAAC TTACTGAAAC TGATACCCTG 81624 || AG........ .......... .......... .......... .......... .......... 722 CCACATCGTC ATCTTCAGGG CTACCTTTTG GGCAATCCAG TCACTGATCA CAACTTCGAT 81564 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GG CTACCTTTTG GGCAATCCAG TCACTGATCA CAACTTCGAT 764 GCTCCATCCA AAATTCCATT TGCCCATGGG ATGGGTCTCA TATCTGACCA ACTGTATCAG 81504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCATCCA AAATTCCATT TGCCCATGGG ATGGGTCTCA TATCTGACCA ACTGTATCAG 824 GTAATTGGCA TCCATATATC CTACTTCACG ACGGATTTTT ACCAGCATCT TACTATATAC 81444 .......... .......... .......... .......... .......... .......... 824 TACGTACGTA TATAATCATG TATGATTTCT AGGCATACAA GAAGAGCTGC AGTGTCAAGC 81384 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GCATACAA GAAGAGCTGC AGTGTCAAGC 852 ACAACACCCA GCAGCAAAGC GTTCAGTGCA CAAATACTCT TGATGCCATA GATGAGGCAT 81324 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ACAACACCCA GCAGCAAAGC GTTCAGTGCA CAAATACTCT TGATGCCATA GATGAG.... 908 GTACTTAGTA GGATTACTTA CTCTGCTTTG TTGTTCAGTT TCAGTGATGC TGACCACTAA 81264 .......... .......... .......... .......... .......... .......... 908 TAATCAATGG TCTGTCTCTT GAATTAATTG TGCAGTGTGT CAAGGACATA TACGGAAATC 81204 ||||| |||||||||| |||||||||| .......... .......... .......... .....TGTGT CAAGGACATA TACGGAAATC 933 ACATTCTGGA GCCTTACTGC ACTTTTGCAA GCCCGCATAA TCCGCGCATC GATAAGCCAT 81144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTCTGGA GCCTTACTGC ACTTTTGCAA GCCCGCATAA TCCGCGCATC GATAAGCCAT 993 TCACTTCAGG GGTACGGCAG ATACTCCAAC TCCAAGACTT TCACTTGTCT GAGATTTCTT 81084 |||||||||| | TCACTTCAGG G......... .......... .......... .......... .......... 1004 CAGAATGCAG AGTCAGTGGA CCCTAATTAT TTTCTTTATC AAATCTTCTT CGAGTACTAG 81024 .......... .......... .......... .......... .......... .......... 1004 // intron part 81023 80904 (120 n) not shown // //........ .......... .......... .......... .......... ........// TATATGTTAG TGGGTAGTAT TGGTTAGCCG ACCAAATCTT ACCATTTGGT ATTTCTTCAT 80844 .......... .......... .......... .......... .......... .......... 1004 GTCATGCAGA CGGCAGAATA TACAATGTCC AGAATATGGG CCAACAATGA TACAGTAAGA 80784 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........A CGGCAGAATA TACAATGTCC AGAATATGGG CCAACAATGA TACAGTAAGA 1055 GAGGCCCTTG GAATTCACCA GGTATATACA CATCTCTTCA TCATCATTCA ATTGAACAGT 80724 |||||||||| |||||||||| | GAGGCCCTTG GAATTCACCA G......... .......... .......... .......... 1076 AATTTGCATG CAGGTTCGAT CATTCTGTCA CACAGCATAA CACAACACAA TGCAATGATC 80664 .......... .......... .......... .......... .......... .......... 1076 CACTGTATTC ATTCTGCAAT GCAGGGAACA GTTCCTTCGT GGCAAAGATG CAACTACGAC 80604 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGAACA GTTCCTTCGT GGCAAAGATG CAACTACGAC 1112 ATTCTGTACA CTTATGACAT CAAAAGTTCA GTAAGATACC ATCTGGATTT GACAACTAGA 80544 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTGTACA CTTATGACAT CAAAAGTTCA GTAAGATACC ATCTGGATTT GACAACTAGA 1172 GGCTACAGAA GCCTAATTTA CAGTGGTGAT CATGACATGA TTATCCCTTT CATCGGCACG 80484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTACAGAA GCCTAATTTA CAGTGGTGAT CATGACATGA TTATCCCTTT CATCGGCACG 1232 CAAGCCTGGA TTAGATCTCT GAATTTCTCT GTCGTGGATG AGTGGAGACC ATGGTTTGTG 80424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCCTGGA TTAGATCTCT GAATTTCTCT GTCGTGGATG AGTGGAGACC ATGGTTTGTG 1292 GATGGACAAG TTGCAGGGTG AGGACACACA GTATTCATCG ATACCATCAA ATTAATTGAG 80364 |||||||||| ||||||| GATGGACAAG TTGCAGG... .......... .......... .......... .......... 1309 TACGTGTGCG AGTACTGTGT CTGTCTCTGA CCAGATATAT TATCCGTCTG TCTTATGTGC 80304 .......... .......... .......... .......... .......... .......... 1309 AGATATATAA GGTCATACTC CAATAACCTC ACATTCGCAA CTGTCAAGGT ATGTGCCAGC 80244 |||||||| |||||||||| |||||||||| |||||||||| |||||||| ..ATATATAA GGTCATACTC CAATAACCTC ACATTCGCAA CTGTCAAG.. .......... 1355 GTTTTAGCTT CCTTCAAGGG ATGCAACACA TTAATATCTT GGTACGCATG ATCTAGGGTC 80184 .......... .......... .......... .......... .......... .......... 1355 // intron part 80183 80064 (120 n) not shown // //........ .......... .......... .......... .......... ........// AACTAAACGT AGATATTTTT TTTATAACTT TAAAAAAATA ATATGGTTGA AAATGGCATC 80004 .......... .......... .......... .......... .......... .......... 1355 AAAGTGAACA GGCCCTCAGT AACTAAAAAG AGTATTTTGG TGTTAATTTG TGTAGGGTGG 79944 ||||| .......... .......... .......... .......... .......... .....GGTGG 1360 TGGACATACT GCTCCAGAAT ACATGCCAAA GCAATGCCTT GCTATGCTTG CAAGGTGGGT 79884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACATACT GCTCCAGAAT ACATGCCAAA GCAATGCCTT GCTATGCTTG CAAGGTGGGT 1420 TTCTGGCAAT CCTCTTTGAC GATGGTGCAT ATATGTGTAA GAGAAAATTC CAGGATGGAG 79824 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGCAAT CCTCTTTGAC GATGGTGCAT ATATGTGTAA GAGAAAATTC CAGGATGGAG 1480 ATATTACATC ACAAGAAATT TATGATTTTG CTAAAATTGT GGCGACATTT TTTTCCCCAT 79764 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTACATC ACAAGAAATT TATGATTTTG CTAAAATTGT GGCGACATTT TTTTCCCCAT 1540 CACGGTTGAA TGCTTTTCTC TTGGGTTGCG GCGGAGACTA TACTCGCGCG TGTATTATAT 79704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGGTTGAA TGCTTTTCTC TTGGGTTGCG GCGGAGACTA TACTCGCGCG TGTATTATAT 1600 ATGTCTGTTT CTTCACGAAG TGCATGAAGA TTTGTCCCAT GTGTAAGATC TGGAGAGTGA 79644 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCTGTTT CTTCACGAAG TGCATGAAGA TTTGTCCCAT GTGTAAGATC TGGAGAGTGA 1660 GAACAAAACA TGGTTCAATA CAGTGCAAAT GATGGATCGA AGAGCATACT CCTACACGTC 79584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAAAACA TGGTTCAATA CAGTGCAAAT GATGGATCGA AGAGCATACT CCTACACGTC 1720 AATGTAAATA GACATGTAAC ATTTTATTAC GCCGTCAGTG TGGCCCCCAG TTTTGTACAC 79524 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTAAATA GACATGTAAC ATTTTATTAC GCCGTCAGTG TGGCCCCCAG TTTTGTACAC 1780 CGGAAATCCA ATGTGTTTTA CGATATCATT CTCTGAATCA TCAGTACTTA TTTGTAT 79467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGGAAATCCA ATGTGTTTTA CGATATCATT CTCTGAATCA TCAGTACTTA TTTGTAT 1837 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32982977|dbj|AK072954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149K09, full insert sequence 1 GCTGGCTCAT GCATTTGCTA GCTAGCTCAT CGTCGATACC AATGGCGACT ACCAGGGCCA 61 CATCGACGCT GCTGCTGCTG CTGCTGCTGG TTTCGGCAAC ATGGGCGGCA TCGGCGCCGA 121 CGACGAGTCG GGCGAGGAAC GTGATAACAC ACGTGAAGGG GTTCCAAGGG AGGCTGCCGT 181 TCCACCTGGA GACGGGGTAT GTGGAGGTGG ACAACACCAA TACCGTTGAG CTCTTCTACT 241 ACTTCATCCA GTCGGAGCGC AGCCCCGCCG ATGACCCCCT CATCCTCTGG ATCACCGGCG 301 GCCCCGGCTG CTCCGCCCTC TCCGGCCTCC TCTTCGAGAT TGGCCCTCTC AAGTTTGACG 361 TAGCTGGGTA CACGGAAGGG TTCCCTCAAT TGTTCTACTT CCAAGATTCC TGGACCAAGG 421 TGAGCAACGT GATATTTCTG GACGCGCCGG TGGGGACGGG GTTCTCCTAC GCCCGTGAGG 481 AACAAGGGTA CAACGTCACC CTCACACAGA CGGGACAGCA GCTGGTGGTG TTCCTCACCA 541 AATGGCTGGG CGATCACCCA GAGTTCGCCT CGAACCCTCT CTACATCGGC GGCGACTCCT 601 ACTCCGGCTA CACCGTCCCA GTGACGGCGC TCCAGATCGC CAACGACGAC GACGCCCGGG 661 CGCGGCTGAA CCTCAAGGGC TACCTGGTGG GCAACGCTGC CACGGACGTC AAGTACGACA 721 GTGGGGGCAA GGTGCCCTTC ATGCACGGCA TGGGGCTCAT CTCCGACGAG ATGTACGAGG 781 CCGCGCGGAG CAGCTGCCGT GGCGACTACG TGTCCACCCC GACCAACGCC GACTGCGCCA 841 ACGCGCTGCA GGCCATCAGC ATGGCAACCT TCGCCATCAA CCCGGTGCAC ATCCTGGAGC 901 CCATATGCGG ATTCGCGCTG CGCGGGCGCG CGATGCCTGA GACGACGATG GACCAGCGCC 961 TGCGCCTGGG CCTCCCCGTG GAGTGCAGGG ACAACGGCTA CCGGCTGTCG TACCTGTGGG 1021 CGGACGACCC GGAGGTGCGC GCCACGCTGG GCATCCACGA GGGCTCCATC GCCTCCTGGA 1081 GCCGCTGCAC GGCGCTGCCG CTCTTCCGGC ACGACGTGGA CAGCGCCATC CCCTACCACG 1141 CGGAGCTCAC GCAGCGCGGC TACAGGGCGC TGGTGTACAA CGGCGACCAC GACCTGGACA 1201 TGACGTTCGT TGGCACGCAG CAGTGGATCC GGACGCTGGG CTACAACGTG GTGACCGCCT 1261 GGAGGCCGTG GTACTCCAAC CGCCAGGTTG CCGGCTTCAC CACCGTCTAC GACCACAACC 1321 TCACCTTCGC CACCGTCAAG GGCGGTGGCC ACACCGCCCC GGAGTACCGC CCCAAGGAGT 1381 GCCTCGACAT GCTCGACAGA TGGACCTCTC CGGCCGGCGA GCTCTGAATT ACTTTACTAT 1441 ACTAATTCAT CACCGTCCGT ATATATGTCC GTTTATGGGA AATCTTACCC CCTTCATAAT 1501 TTATCTACTT ATCTTTTATC ATGTCTTATC TTTCTCTTTT CTTAGCCTAT ACTACACACA 1561 CTTACTTACA AAATTCGGAG CATTTGTGTG GTCTGTCGTT CTTTTCCCAC TCGGTTTCCA 1621 TTTCGAGAGT GACGAGGCCC TCCTTTTTTT CCTGT Genomic Template: file=OSchr10, strand=-, from=95782, to=88868, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 95483 95142 ( 342 n); cDNA 1 342 ( 342 n); score: 0.997 Intron 1 95141 90571 (4571 n); Pd: 1.000 (s: 1.00), Pa: 0.931 (s: 1.00) Exon 2 90570 90494 ( 77 n); cDNA 343 419 ( 77 n); score: 1.000 Intron 2 90493 90403 ( 91 n); Pd: 0.885 (s: 1.00), Pa: 0.969 (s: 1.00) Exon 3 90402 89167 (1236 n); cDNA 420 1655 (1236 n); score: 0.999 MATCH OSchr10-v3- 32982977+ 0.999 1655 1.000 C PGS_OSchr10-v3-_32982977+ (95483 95142,90570 90494,90402 89167) Alignment (genomic DNA sequence = upper lines): CCTGGCTCAT GCATTTGCTA GCTAGCTCAT CGTCGATACC AATGGCGACT ACCAGGGCCA 95424 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGCTCAT GCATTTGCTA GCTAGCTCAT CGTCGATACC AATGGCGACT ACCAGGGCCA 60 CATCGACGCT GCTGCTGCTG CTGCTGCTGG TTTCGGCAAC ATGGGCGGCA TCGGCGCCGA 95364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGACGCT GCTGCTGCTG CTGCTGCTGG TTTCGGCAAC ATGGGCGGCA TCGGCGCCGA 120 CGACGAGTCG GGCGAGGAAC GTGATAACAC ACGTGAAGGG GTTCCAAGGG AGGCTGCCGT 95304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACGAGTCG GGCGAGGAAC GTGATAACAC ACGTGAAGGG GTTCCAAGGG AGGCTGCCGT 180 TCCACCTGGA GACGGGGTAT GTGGAGGTGG ACAACACCAA TACCGTTGAG CTCTTCTACT 95244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCACCTGGA GACGGGGTAT GTGGAGGTGG ACAACACCAA TACCGTTGAG CTCTTCTACT 240 ACTTCATCCA GTCGGAGCGC AGCCCCGCCG ATGACCCCCT CATCCTCTGG ATCACCGGCG 95184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCATCCA GTCGGAGCGC AGCCCCGCCG ATGACCCCCT CATCCTCTGG ATCACCGGCG 300 GCCCCGGCTG CTCCGCCCTC TCCGGCCTCC TCTTCGAGAT TGGTACCCAG CTCTATCTTA 95124 |||||||||| |||||||||| |||||||||| |||||||||| || GCCCCGGCTG CTCCGCCCTC TCCGGCCTCC TCTTCGAGAT TG........ .......... 342 ATTATTTCTT CATTCATTTT CGATCGCCCA ATAAATTAAC CACTGATATA GGAGTTTTCA 95064 .......... .......... .......... .......... .......... .......... 342 // intron part 95063 90684 (4380 n) not shown // //........ .......... .......... .......... .......... ........// ATGGTTGCTG AAATTAGCTC GTGATCCTGT CGGTTATATA ATTAATAGGA GTATAATTTT 90624 .......... .......... .......... .......... .......... .......... 342 TTTTGTTAGG AAAATGATTT TCAAAGGTAA TGAGTACACG TGCATATATA CAGGCCCTCT 90564 ||||||| .......... .......... .......... .......... .......... ...GCCCTCT 349 CAAGTTTGAC GTAGCTGGGT ACACGGAAGG GTTCCCTCAA TTGTTCTACT TCCAAGATTC 90504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTTTGAC GTAGCTGGGT ACACGGAAGG GTTCCCTCAA TTGTTCTACT TCCAAGATTC 409 CTGGACCAAG GTACTAGCTA ATGAATCAAG TATGTGGAAT ATATTTTGCC TAAAAAAATA 90444 |||||||||| CTGGACCAAG .......... .......... .......... .......... .......... 419 AATTGCATGA ATAATGAAGA GTGATATATG TTTGATGTTA GGTGAGCAAC GTGATATTTC 90384 ||||||||| |||||||||| .......... .......... .......... .......... .GTGAGCAAC GTGATATTTC 438 TGGACGCGCC GGTGGGGACG GGGTTCTCCT ACGCCCGTGA GGAACAAGGG TACAACGTCA 90324 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACGCGCC GGTGGGGACG GGGTTCTCCT ACGCCCGTGA GGAACAAGGG TACAACGTCA 498 CCCTCACACA GACGGGACAG CAGCTGGTGG TGTTCCTCAC CAAATGGCTG GGCGATCACC 90264 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTCACACA GACGGGACAG CAGCTGGTGG TGTTCCTCAC CAAATGGCTG GGCGATCACC 558 CAGAGTTCGC CTCGAACCCT CTCTACATCG GCGGCGACTC CTACTCCGGC TACACCGTCC 90204 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGTTCGC CTCGAACCCT CTCTACATCG GCGGCGACTC CTACTCCGGC TACACCGTCC 618 CAGTGACGGC GCTCCAGATC GCCAACGACG ACGACGCCCG GGCGCGGCTG AACCTCAAGG 90144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGACGGC GCTCCAGATC GCCAACGACG ACGACGCCCG GGCGCGGCTG AACCTCAAGG 678 GCTACCTGGT GGGCAACGCT GCCACGGACG TCAAGTACGA CAGTGGGGGC AAGGTGCCCT 90084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACCTGGT GGGCAACGCT GCCACGGACG TCAAGTACGA CAGTGGGGGC AAGGTGCCCT 738 TCATGCACGG CATGGGGCTC ATCTCCGACG AGATGTACGA GGCCGCGCGG AGCAGCTGCC 90024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGCACGG CATGGGGCTC ATCTCCGACG AGATGTACGA GGCCGCGCGG AGCAGCTGCC 798 GTGGCGACTA CGTGTCCACC CCGACCAACG CCGACTGCGC CAACGCGCTG CAGGCCATCA 89964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCGACTA CGTGTCCACC CCGACCAACG CCGACTGCGC CAACGCGCTG CAGGCCATCA 858 GCATGGCAAC CTTCGCCATC AACCCGGTGC ACATCCTGGA GCCCATATGC GGATTCGCGC 89904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGGCAAC CTTCGCCATC AACCCGGTGC ACATCCTGGA GCCCATATGC GGATTCGCGC 918 TGCGCGGGCG CGCGATGCCT GAGACGACGA TGGACCAGCG CCTGCGCCTG GGCCTCCCCG 89844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGCGGGCG CGCGATGCCT GAGACGACGA TGGACCAGCG CCTGCGCCTG GGCCTCCCCG 978 TGGAGTGCAG GGACAACGGC TACCGGCTGT CGTACCTGTG GGCGGACGAC CCGGAGGTGC 89784 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGTGCAG GGACAACGGC TACCGGCTGT CGTACCTGTG GGCGGACGAC CCGGAGGTGC 1038 GCGCCACGCT GGGCATCCAC GAGGGCTCCA TCGCCTCCTG GAGCCGCTGC ACGGCGCTGC 89724 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCCACGCT GGGCATCCAC GAGGGCTCCA TCGCCTCCTG GAGCCGCTGC ACGGCGCTGC 1098 CGCTCTTCCG GCACGACGTG GACAGCGCCA TCCCCTACCA CGCGGAGCTC ACGCAGCGCG 89664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTCTTCCG GCACGACGTG GACAGCGCCA TCCCCTACCA CGCGGAGCTC ACGCAGCGCG 1158 GCTACAGGGC GCTGGTGTAC AACGGCGACC ACGACCTGGA CATGACGTTC GTTGGCACGC 89604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACAGGGC GCTGGTGTAC AACGGCGACC ACGACCTGGA CATGACGTTC GTTGGCACGC 1218 AGCAGTGGAT CCGGACGCTG GGCTACAACG TGGTGACCGC CTGGAGGCCG TGGTACTCCA 89544 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGTGGAT CCGGACGCTG GGCTACAACG TGGTGACCGC CTGGAGGCCG TGGTACTCCA 1278 ACCGCCAGGT TGCCGGCTTC ACCACCGTCT ACGACCACAA CCTCACCTTC GCCACCGTCA 89484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGCCAGGT TGCCGGCTTC ACCACCGTCT ACGACCACAA CCTCACCTTC GCCACCGTCA 1338 AGGGCGGTGG CCACACCGCC CCGGAGTACC GCCCCAAGGA GTGCCTCGAC ATGCTCGACA 89424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGCGGTGG CCACACCGCC CCGGAGTACC GCCCCAAGGA GTGCCTCGAC ATGCTCGACA 1398 GATGGACCTC TCCGGCCGGC GAGCTCTGAA TTACTTTACT ATACTAATTC ATCACCGTCC 89364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGACCTC TCCGGCCGGC GAGCTCTGAA TTACTTTACT ATACTAATTC ATCACCGTCC 1458 GTATATATGT CCGTTTATGG GAAATCTTAC CCCCTTCATA ATTTATCTAC TTATCTTTTA 89304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATATATGT CCGTTTATGG GAAATCTTAC CCCCTTCATA ATTTATCTAC TTATCTTTTA 1518 TCATGTCTTA TCTTTCTCTT TTCTTAGCCT ATACTACACA CACTTACTTA CAAAATTCGG 89244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGTCTTA TCTTTCTCTT TTCTTAGCCT ATACTACACA CACTTACTTA CAAAATTCGG 1578 AGCATTTGTG TGGTCTGTCG TTCTTTTCCC ACTCGGTTTC CATTTCGAGA GTGACGAGGC 89184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATTTGTG TGGTCTGTCG TTCTTTTCCC ACTCGGTTTC CATTTCGAGA GTGACGAGGC 1638 CCTCCTTTTT TTCCTGC 89167 |||||||||| |||||| CCTCCTTTTT TTCCTGT 1655 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32990016|dbj|AK104807.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E08, full insert sequence 1 GGCTCATGCA TTTGCTAGCT AGCTCATCGT CGATACCAAT GGCGACTACC AGGGCCACAT 61 CGACGCTGCT GCTGCTGCTG CTGCTGGTTT CGGCAACATG GGCGGCATCG GCGCCGACGA 121 CGAGTCGGGC GAGGAACGTG ATAACACACG TGAAGGGGTT CCAAGGGAGG CTGCCGTTCC 181 ACCTGGAGAC GGGGTATGTG GAGGTGGACA ACACCAATAC CGTTGAGCTC TTCTACTACT 241 TCATCCAGTC GGAGCGCAGC CCCGCCGATG ACCCCCTCAT CCTCTGGATC ACCGGCGGCC 301 CCGGCTGCTC CGCCCTCTCC GGCCTCCTCT TCGAGATTGG CCCTCTCAAG TTTGACGTAG 361 CTGGGTACAC GGAAGGGTTC CCTCAATTGT TCTACTTCCA AGATTCCTGG ACCAAGGTGA 421 GCAACGTGAT ATTTCTGGAC GCGCCGGTGG GGACGGGGTT CTCCTACGCC CGTGAGGAAC 481 AAGGGTACAA CGTCACCCTC ACACAGACGG GACAGCAGCT GGTGGTGTTC CTCACCAAAT 541 GGCTGGGCGA TCACCCAGAG TTCGCCTCGA ACCCTCTCTA CATCGGCGGC GACTCCTACT 601 CCGGCTACAC CGTCCCAGTG ACGGCGCTCC AGATCGCCAA CGACGACGAC GCCCGGGCGC 661 GGCTGAACCT CAAGGGCTAC CTGGTGGGCA ACGCTGCCAC GGACGTCAAG TACGACAGTG 721 GGGGCAAGGT GCCCTTCATG CACGGCATGG GGCTCATCTC CGACGAGATG TACGAGGCCG 781 CGCGGAGCAG CTGCCGTGGC GACTACGTGT CCACCCCGAC CAACGCCGAC TGCGCCAACG 841 CGCTGCAGGC CATCAGCATG GCAACCTTCG CCATCAACCC GGTGCACATC CTGGAGCCCA 901 TATGCGGATT CGCGCTGCGC GGGCGCGCGA TGCCTGAGAC GACGATGGAC CAGCGCCTGC 961 GCCTGGGCCT CCCCGTGGAG TGCAGGGACA ACGGCTACCG GCTGTCGTAC CTGTGGGCGG 1021 ACGACCCGGA GGTGCGCGCC ACGCTGGGCA TCCACGAGGG CTCCATCGCC TCCTGGAGCC 1081 GCTGCACGGC GCTGCCGCTC TTCCGGCACG ACGTGGACAG CGCCATCCCC TACCACGCGG 1141 AGCTCACGCA GCGCGGCTAC AGGGCGCTGG TGTACAACGG CGACCACGAC CTGGACATGA 1201 CGTTCGTTGG CACGCAGCAG TGGATCCGGA CGCTGGGCTA CAACGTGGTG ACCGCCTGGA 1261 GGCCGTGGTA CTCCAACCGC CAGGTTGCCG GCTTCACCAC CGTCTACGAC CACAACCTCA 1321 CCTTCGCCAC CGTCAAGGGC GGTGGCCACA CCGCCCCGGA GTACCGCCCC AAGGAGTGCC 1381 TCGACATGCT CGACAGATGG ACCTCTCCGG CCGGCGAGCT CTGAATTACT TTACTATACT 1441 AATTCATCAC CGTCCGTATA TATGTCCGTT TATGGGAAAT CTTACCCCCT TCATAATTTA 1501 TCTACTTATC TTTTATCATG TCTTATCTTT CTCTTTTCTT AGCCTATACT ACACACACTT 1561 ACTTACAAAA TTCGGAGCAT TTGTGTGGTC TGTCGTTCTT TTCCC Genomic Template: file=OSchr10, strand=-, from=95780, to=88914, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 95480 95142 ( 339 n); cDNA 1 339 ( 339 n); score: 1.000 Intron 1 95141 90571 (4571 n); Pd: 1.000 (s: 1.00), Pa: 0.931 (s: 1.00) Exon 2 90570 90494 ( 77 n); cDNA 340 416 ( 77 n); score: 1.000 Intron 2 90493 90403 ( 91 n); Pd: 0.885 (s: 1.00), Pa: 0.969 (s: 1.00) Exon 3 90402 89214 (1189 n); cDNA 417 1605 (1189 n); score: 1.000 MATCH OSchr10-v3- 32990016+ 1.000 1605 1.000 C PGS_OSchr10-v3-_32990016+ (95480 95142,90570 90494,90402 89214) Alignment (genomic DNA sequence = upper lines): GGCTCATGCA TTTGCTAGCT AGCTCATCGT CGATACCAAT GGCGACTACC AGGGCCACAT 95421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTCATGCA TTTGCTAGCT AGCTCATCGT CGATACCAAT GGCGACTACC AGGGCCACAT 60 CGACGCTGCT GCTGCTGCTG CTGCTGGTTT CGGCAACATG GGCGGCATCG GCGCCGACGA 95361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACGCTGCT GCTGCTGCTG CTGCTGGTTT CGGCAACATG GGCGGCATCG GCGCCGACGA 120 CGAGTCGGGC GAGGAACGTG ATAACACACG TGAAGGGGTT CCAAGGGAGG CTGCCGTTCC 95301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGTCGGGC GAGGAACGTG ATAACACACG TGAAGGGGTT CCAAGGGAGG CTGCCGTTCC 180 ACCTGGAGAC GGGGTATGTG GAGGTGGACA ACACCAATAC CGTTGAGCTC TTCTACTACT 95241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGGAGAC GGGGTATGTG GAGGTGGACA ACACCAATAC CGTTGAGCTC TTCTACTACT 240 TCATCCAGTC GGAGCGCAGC CCCGCCGATG ACCCCCTCAT CCTCTGGATC ACCGGCGGCC 95181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCAGTC GGAGCGCAGC CCCGCCGATG ACCCCCTCAT CCTCTGGATC ACCGGCGGCC 300 CCGGCTGCTC CGCCCTCTCC GGCCTCCTCT TCGAGATTGG TACCCAGCTC TATCTTAATT 95121 |||||||||| |||||||||| |||||||||| ||||||||| CCGGCTGCTC CGCCCTCTCC GGCCTCCTCT TCGAGATTG. .......... .......... 339 ATTTCTTCAT TCATTTTCGA TCGCCCAATA AATTAACCAC TGATATAGGA GTTTTCATCA 95061 .......... .......... .......... .......... .......... .......... 339 // intron part 95060 90681 (4380 n) not shown // //........ .......... .......... .......... .......... ........// GTTGCTGAAA TTAGCTCGTG ATCCTGTCGG TTATATAATT AATAGGAGTA TAATTTTTTT 90621 .......... .......... .......... .......... .......... .......... 339 TGTTAGGAAA ATGATTTTCA AAGGTAATGA GTACACGTGC ATATATACAG GCCCTCTCAA 90561 |||||||||| .......... .......... .......... .......... .......... GCCCTCTCAA 349 GTTTGACGTA GCTGGGTACA CGGAAGGGTT CCCTCAATTG TTCTACTTCC AAGATTCCTG 90501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGACGTA GCTGGGTACA CGGAAGGGTT CCCTCAATTG TTCTACTTCC AAGATTCCTG 409 GACCAAGGTA CTAGCTAATG AATCAAGTAT GTGGAATATA TTTTGCCTAA AAAAATAAAT 90441 ||||||| GACCAAG... .......... .......... .......... .......... .......... 416 TGCATGAATA ATGAAGAGTG ATATATGTTT GATGTTAGGT GAGCAACGTG ATATTTCTGG 90381 || |||||||||| |||||||||| .......... .......... .......... ........GT GAGCAACGTG ATATTTCTGG 438 ACGCGCCGGT GGGGACGGGG TTCTCCTACG CCCGTGAGGA ACAAGGGTAC AACGTCACCC 90321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCGCCGGT GGGGACGGGG TTCTCCTACG CCCGTGAGGA ACAAGGGTAC AACGTCACCC 498 TCACACAGAC GGGACAGCAG CTGGTGGTGT TCCTCACCAA ATGGCTGGGC GATCACCCAG 90261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACACAGAC GGGACAGCAG CTGGTGGTGT TCCTCACCAA ATGGCTGGGC GATCACCCAG 558 AGTTCGCCTC GAACCCTCTC TACATCGGCG GCGACTCCTA CTCCGGCTAC ACCGTCCCAG 90201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCGCCTC GAACCCTCTC TACATCGGCG GCGACTCCTA CTCCGGCTAC ACCGTCCCAG 618 TGACGGCGCT CCAGATCGCC AACGACGACG ACGCCCGGGC GCGGCTGAAC CTCAAGGGCT 90141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGGCGCT CCAGATCGCC AACGACGACG ACGCCCGGGC GCGGCTGAAC CTCAAGGGCT 678 ACCTGGTGGG CAACGCTGCC ACGGACGTCA AGTACGACAG TGGGGGCAAG GTGCCCTTCA 90081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGGTGGG CAACGCTGCC ACGGACGTCA AGTACGACAG TGGGGGCAAG GTGCCCTTCA 738 TGCACGGCAT GGGGCTCATC TCCGACGAGA TGTACGAGGC CGCGCGGAGC AGCTGCCGTG 90021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACGGCAT GGGGCTCATC TCCGACGAGA TGTACGAGGC CGCGCGGAGC AGCTGCCGTG 798 GCGACTACGT GTCCACCCCG ACCAACGCCG ACTGCGCCAA CGCGCTGCAG GCCATCAGCA 89961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGACTACGT GTCCACCCCG ACCAACGCCG ACTGCGCCAA CGCGCTGCAG GCCATCAGCA 858 TGGCAACCTT CGCCATCAAC CCGGTGCACA TCCTGGAGCC CATATGCGGA TTCGCGCTGC 89901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCAACCTT CGCCATCAAC CCGGTGCACA TCCTGGAGCC CATATGCGGA TTCGCGCTGC 918 GCGGGCGCGC GATGCCTGAG ACGACGATGG ACCAGCGCCT GCGCCTGGGC CTCCCCGTGG 89841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGGCGCGC GATGCCTGAG ACGACGATGG ACCAGCGCCT GCGCCTGGGC CTCCCCGTGG 978 AGTGCAGGGA CAACGGCTAC CGGCTGTCGT ACCTGTGGGC GGACGACCCG GAGGTGCGCG 89781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCAGGGA CAACGGCTAC CGGCTGTCGT ACCTGTGGGC GGACGACCCG GAGGTGCGCG 1038 CCACGCTGGG CATCCACGAG GGCTCCATCG CCTCCTGGAG CCGCTGCACG GCGCTGCCGC 89721 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACGCTGGG CATCCACGAG GGCTCCATCG CCTCCTGGAG CCGCTGCACG GCGCTGCCGC 1098 TCTTCCGGCA CGACGTGGAC AGCGCCATCC CCTACCACGC GGAGCTCACG CAGCGCGGCT 89661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCCGGCA CGACGTGGAC AGCGCCATCC CCTACCACGC GGAGCTCACG CAGCGCGGCT 1158 ACAGGGCGCT GGTGTACAAC GGCGACCACG ACCTGGACAT GACGTTCGTT GGCACGCAGC 89601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGGCGCT GGTGTACAAC GGCGACCACG ACCTGGACAT GACGTTCGTT GGCACGCAGC 1218 AGTGGATCCG GACGCTGGGC TACAACGTGG TGACCGCCTG GAGGCCGTGG TACTCCAACC 89541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGATCCG GACGCTGGGC TACAACGTGG TGACCGCCTG GAGGCCGTGG TACTCCAACC 1278 GCCAGGTTGC CGGCTTCACC ACCGTCTACG ACCACAACCT CACCTTCGCC ACCGTCAAGG 89481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAGGTTGC CGGCTTCACC ACCGTCTACG ACCACAACCT CACCTTCGCC ACCGTCAAGG 1338 GCGGTGGCCA CACCGCCCCG GAGTACCGCC CCAAGGAGTG CCTCGACATG CTCGACAGAT 89421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGTGGCCA CACCGCCCCG GAGTACCGCC CCAAGGAGTG CCTCGACATG CTCGACAGAT 1398 GGACCTCTCC GGCCGGCGAG CTCTGAATTA CTTTACTATA CTAATTCATC ACCGTCCGTA 89361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACCTCTCC GGCCGGCGAG CTCTGAATTA CTTTACTATA CTAATTCATC ACCGTCCGTA 1458 TATATGTCCG TTTATGGGAA ATCTTACCCC CTTCATAATT TATCTACTTA TCTTTTATCA 89301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATGTCCG TTTATGGGAA ATCTTACCCC CTTCATAATT TATCTACTTA TCTTTTATCA 1518 TGTCTTATCT TTCTCTTTTC TTAGCCTATA CTACACACAC TTACTTACAA AATTCGGAGC 89241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTATCT TTCTCTTTTC TTAGCCTATA CTACACACAC TTACTTACAA AATTCGGAGC 1578 ATTTGTGTGG TCTGTCGTTC TTTTCCC 89214 |||||||||| |||||||||| ||||||| ATTTGTGTGG TCTGTCGTTC TTTTCCC 1605 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|37990801|dbj|AK121178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083G22, full insert sequence 1 GATACCATCG AGCTCTCCGA GCTCCTTCTC TCTCCTCTCC ATGTCCGGCC ATTGCCGCCA 61 CCGGTCGATC TCCCTCACCG GTGCCCCACT GGCCAAACCC CCGCGCCACC AACTTCGCCT 121 CGGCGAGGCA AACCCATTTC CCCACTTCCC CTTCCTTTCC CCCTTCGAAA TAAGCCACCA 181 CCGCCACTTC TCCTTGCCGC CGGAGATAAG CTTTTCCCCT AGCCGTTCCG GCCTCCTCCC 241 TTCTTTCCTT CGCTAGACGA CAGCTTCCCT GGATGCGTGT TGCTCGGGAA CACGCGTGGC 301 CGCCGACGTC GTCGTCTCCC GGCCACCAGG GCACCGGCGC CCCTTCTCTC CTTCTCCTGT 361 GTTGGCTGGA AGGAAAAGAA AAGAAGAGAA CACGGGAAGA AGAAGAAGAA GAAGAAGAGA 421 AAGAAAAAGA AGAGAAGATA CTGACAGAGT CTATTTTATT CTGAATGGCA ACCTGTGGTA 481 TTTCGAGCAT CGAATAATCA GGTTGCCTAT TTCGGATTTA TTTGCGTTGG AGCAAGGCAA 541 GTTATTATTC CTTCCCTTTG AGCATAAATG CCCTACATTC TATATTCTAT TCTATGCACT 601 AGCCATACAT GATTTTGAAT GCATAATCTG AACATATAGC GAACCAGTTA TATGCTAGCT 661 TTTGCTTAGC CATGCTTAGT TAGAATATGC ATAAAATTTA ATGAACTTAG ATTGGGATAG 721 TACGTAAGAT TTGGTTGATT TCCGGGTGGC TAGTACTGTC TCGATCGATA TAATTGCCAC 781 CAAATACTTA TGTCAAACGA ACAAGTACGA CCGCAGCTTC TAGAATGGGG ACAGACCTAG 841 TTATTAGGTT AATTAACAAT GTGGTACCTC TGTATAGTGG TTCTTATCTA AGTCCTCGCG 901 AAGGAGGCAA ACTTATGCCG CGGAGGGCAA ATGTGATATT TACCGAGGCG CAGGTAAATA 961 TCTTTATTGC GATAACTAAG TGTGTGTATT GTGAAAACCT GATTGAGATG ACATGGGTCT 1021 CTCAACCAGT TCTCTCTAAA AACCTCGGGA ACGCCAGAAC TCCTCTCGCT GCTGATAACG 1081 TTACGTTCAG AGCGCATGGG GACTAGAGTT CATGGAACAG GTGCCACTAT TGTTAGTAAC 1141 CTAATACTGG GCATGACTAA CCTAATGAAT ATTGGCAAGT CATGGACTGC GGGTAAAGCG 1201 TACATCTACT GCAGTAGAGT ATTCATGAAA CTATTCGAAT AGCCGTGCTC ACGGAATTGA 1261 GTATCGGGAC TCATATGGTA TTTGGCTAGA AACTTAACTC AAGATTTTAC TAAATACTGT 1321 TGCATAAAGA CATCCCAGGC TTTCTTCCTC TTTATTCTCA GCTTTCTGCC AATAAACCTA 1381 GATCTACTTA AATACTACTT CATGCATTCA TTATTTGATA TAATAGCTTG CTGAGTACGT 1441 TGTACTCACC CTTGCTTCAA CCACCTTTTT CAAAGTATAT TTGGAGTTCT TGCTGATGCT 1501 GGGAGTTCAA TCACATAAGT TAGTTCCCTT TTAACTTAAT CTTCAAGTCT AGGTAATTTA 1561 AATGGTTTAA GTCTATAGTA AAACAACAGA GTTAGGTCAT TTTAAAGCTT CTGCTGTAAT 1621 AGTTAGCCAG AATCTCGTAA ATACCCTATT ACTTTATGTA ATAATATCTC CTTCAAAGCT 1681 ATGTCTAAAT GTATGCAAAG ACGATCCAGA TTATTGAAGC TGTATCAACC TACTGATCCA 1741 GGGCTTGATA CAGTTAAACA TGTCGGTTTC TGAATCATTA GTTTTGGGAC CCGACATTTT 1801 CGCAGGCGGG CCGTTGCCCC CGACCATGTT GGGCCGCAGT CGATCCTCCC CCACGCCTGC 1861 AAAAATTACT TTTGGCTACC TGCAAAAATG CTTTTTCTAG TAGTGACGAT CTTTAGTCCC 1921 GGTTGGTATT ACCAACCATG AAGTCCTGGT TGGTAACACC AACCCGGACT AAAGATATTT 1981 TTAGTCCCGG TCGATGTTAC CAACCCGGAC TAAAGATGCC TCTAAGGTTA GTTTTAAAAA 2041 AAAAGCATAT CTATCCAAGT TAGATGTGTA TTGTATGTGG GATGGTAATG CGCGTGAGGG 2101 CTGAGATGAG AGATCTTGAG TTTAAATCCC ACACCTCACA CATTTTTTTA CTTGGTATGC 2161 ATTTTAATTT AGTCCCAAAT TGTGCGCAAC CGGGACTAAA AACGGTTGCG AACCTTCTTC 2221 ATGCTGTAGC GGGCCTGTGT CATGCTGGCC TGGACCGCCC GTTTGGCTAG CTGTAGGTAT 2281 AGATAAGATG AGTATTATTC AATAGGTAAA TGTAATATAG ATGGACGTGA CTACACAGCT 2341 AGTGGTAGCT GGTTTGTCTA AACCAGCTAC TACTCCATCT ATGAGAGACA CTATCTACAT 2401 ATACTTTAAA TACAATTTTC TCTTAAATTA CTCATCCGAT CTATAATCCG ATTACACCGT 2461 TGTGTTCGTA ACAATTAAAT CTTTATAACA AGATCCCACA TGATTATATT TTGATGAAAA 2521 ATTATAAATT ATTTTCATAA TATATCTAAA TTACTTTTAG ATTTCACTAA ATTACTTCTT 2581 AGACATATGA AAGTAAATTC AATAAAGCCT AAAAGTAATT TATATATATT ATAGAAATAA 2641 CTTATAATAA AAAGAAAGTA ATTTTAATGA ATATCCTTTT TCATTGGACG TGACTACACA 2701 GCTAAAAATG AAAGGAAAAA AACAATCGAT GATTAAACAA ATTTATAGAG AGTTACTTTT 2761 GAACCATGCA AAAGTTACTT CCAATTAACA TTGAAGTGAC TTTTAAAAAT TGTTAAACTT 2821 ACATGTGTTG ATATGTGCTG ATTAAATTTT ATTACTAGAC AAAGTCATAT TTTTATCCCT 2881 ACAACGAATT TACTTCTAAT GTCGTGACAA AGTTACTTCC GTTTTGTTTT AAGTTACTTT 2941 TATAATATAT ATAAATTACT TTTAGACTCT ATTGAATTTA CTTTTATATG TATAAGAAGT 3001 AATTTAGTCA AATCTAAAAG TAACTTATAT GTTGATAAAA GTAACTTACA TATATAATAA 3061 AAGTAGTTTA CAAATATAAA TATTTTTTTA TCATAATATA ATCATGTAAG ATCTTGTTGT 3121 GAAGATTTAA TTGTAACGAA TACAGTGGTG TAATCGAATT ATAGATCGGA TAAGTAATTT 3181 GAGAGAAAAC TTTGTTTGAA GAGGAAAAGG GCATACATGT GCTGTAGTAG ACTTCTCAAA 3241 AAAACAAATG CATGCATGTA GTACGCTATA GTAGACTTCT CCATACACGT TCAGGCGTAG 3301 TTGGTTAAGG CAAAAACGAG AGGTCTCTCC AAATAGATTT TATGAATATA GATATGTGGG 3361 CGAATAAACT TGCTCAAAAG TTGCACGAAG TTATTTATCT ATATAATAAA TCATCCCTGT 3421 AAAATTTAAC TGAATTTGAT AAGATTTTAT AGTGTGACAC GAGTTTAAAA ATTTTGTATC 3481 CAAATTTTAG GCACATATAA TGGCTATGGA ATATGTATGA AAGTGGTGTG GATATTATGG 3541 GTTCCCCATA CCCACACGGC ATGGTTATCC GACTGGTTAT AGGGGATAAC TTATCTCTAT 3601 CTCTATCTCT ACTATTAAAA GTTGAAGATA TTTTTGCCAA AGATTTTTCG TACGTCACAT 3661 TATCCGACAC GAAGTAGATC AGCGTGCGTT TGATTCCCGT TTTAATCATC CGATTGCATT 3721 CACATCTGAT TAACGGTTAC CGGCCTGCGC ACTAATTTGT TTATGTTTTC CAACGACGTG 3781 ACATTGCTGG ATAGAGGCAT CGAGCAGTCC AATTCAGCGT AATAAAATAT TCCTTGAGAG 3841 GCATGAGCGA TCTGGCCAGA AGAAAG Genomic Template: file=OSchr10, strand=-, from=103700, to=102254, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 103700 102395 (1306 n); cDNA 491 1796 (1306 n); score: 0.835 MATCH OSchr10-v3- 37990801+ 0.835 1306 0.903 G PGS_OSchr10-v3-_37990801+ (103700 102395) Alignment (genomic DNA sequence = upper lines): CGGATAATCA GGTTGCCTAT CACGGATTTA TTTGCATTGG AGCAAGGCAA GTTATTATTC 103641 || ||||||| |||||||||| |||||||| ||||| |||| |||||||||| |||||||||| CGAATAATCA GGTTGCCTAT TTCGGATTTA TTTGCGTTGG AGCAAGGCAA GTTATTATTC 550 CTCTCCTTTG AACATAAATG CCCTATATTC TATACCTTTA TTCTATGCAT TAGTCATTCA 103581 || |||||| | |||||||| ||||| |||| |||| | || ||||||||| ||| ||| || CTTCCCTTTG AGCATAAATG CCCTACATTC TATA-TTCTA TTCTATGCAC TAGCCATACA 609 TGATTTCGAA TGCATAAACT G-A-ATATAG CAAACCAG-- ATATGCTAGC TTTTGCTTAG 103525 |||||| ||| ||||||| || | | |||||| | |||||| |||||||||| |||||||||| TGATTTTGAA TGCATAATCT GAACATATAG CGAACCAGTT ATATGCTAGC TTTTGCTTAG 669 CCATGC-CAG TTAG-A-CTG CATAAAATAT AATGAACTTA GATTGGAACA GTACGGTAAA 103468 |||||| || |||| | || |||||||| | |||||||||| |||||| | | |||| |||| CCATGCTTAG TTAGAATATG CATAAAATTT AATGAACTTA GATTGGGATA GTAC-GTAAG 728 AAATGGTTGA TTTCCGGGTG GCTAGTACTA TTCCAACCGA CATAAGACTG CCCAAGTACT 103408 | ||||||| |||||||||| ||||||||| | | | ||| |||| |||| |||| ATTTGGTTGA TTTCCGGGTG GCTAGTACTG TCTCGATCGA TATAATTGCC ACCAAATACT 788 TGTGAAGAAC GAACGAGTAC GACCGCAGCT TCTAGAATGG GGACAGACCT AGATATTATG 103348 | || ||| |||| ||||| |||||||||| |||||||||| |||||||||| || ||||| | TATGTCAAAC GAACAAGTAC GACCGCAGCT TCTAGAATGG GGACAGACCT AGTTATTAGG 848 TTAATTAACA ATGTGGTACC TCTGTACAGT GGTTCCTTTT GTAAGTCCTC GCGCAGGAGG 103288 |||||||||| |||||||||| |||||| ||| |||| ||| | ||||||||| ||| |||||| TTAATTAACA ATGTGGTACC TCTGTATAGT GGTT-CTTAT CTAAGTCCTC GCGAAGGAGG 907 CAAATTTACG CCGCGAAGGG CGATTGTAAT ATTTACTGAG GCGCAGGTAA ATAT-TTGAG 103229 |||| ||| | ||||| |||| | | ||| || |||||| ||| |||||||||| |||| || | CAAACTTATG CCGCGGAGGG CAAATGTGAT ATTTACCGAG GCGCAGGTAA ATATCTTTAT 967 ATAAATTATG ATGACTAGTC TGTTTGTG-A ACCCTGATTG CGATGACATG GTGTCATACG 103170 || | | | | || | ||||| | | |||||||| ||||||||| | ||| | TGCGATAACT AAGTGT-GTG T-ATTGTGAA AACCTGATTG AGATGACATG G-GTCTCTCA 1024 ATCAGTTCTC TCTAAAGACC CCGGGAACGC CAGAACTCCT CTCGCTGCTG ATAACGTTAC 103110 | |||||||| |||||| ||| ||||||||| |||||||||| |||||||||| |||||||||| ACCAGTTCTC TCTAAAAACC TCGGGAACGC CAGAACTCCT CTCGCTGCTG ATAACGTTAC 1084 GTTCAGAGCG CATGGGGACT AGAGTTCATG GAACAAGTGC CACAATTGTT AATAACCTAA 103050 |||||||||| |||||||||| |||||||||| ||||| |||| ||| |||||| | |||||||| GTTCAGAGCG CATGGGGACT AGAGTTCATG GAACAGGTGC CACTATTGTT AGTAACCTAA 1144 TAATAGGCCA TGACTAACCT AATG-A-ATT GGCAAGTCGT GGACTGCGGG TAAAGCGTAC 102992 || | || || |||||||||| |||| | ||| |||||||| | |||||||||| |||||||||| TACT-GGGCA TGACTAACCT AATGAATATT GGCAAGTCAT GGACTGCGGG TAAAGCGTAC 1203 ATCTACTGCA GTAGAATATT CATGAAACTA TTCGAATAGT CGTGCTCACG GAATTGAGTA 102932 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| ATCTACTGCA GTAGAGTATT CATGAAACTA TTCGAATAGC CGTGCTCACG GAATTGAGTA 1263 CCGGGACTCA TATGGTATTT GATTAGAAAC CTAATTCAAG ATTTTACTAA ATACTGTTGC 102872 ||||||||| |||||||||| | ||||||| ||| ||||| |||||||||| |||||||||| TCGGGACTCA TATGGTATTT GGCTAGAAAC TTAACTCAAG ATTTTACTAA ATACTGTTGC 1323 ATTAAAGTCA TTACAGGCTT TCTTCTTCTA CATCCTCTGC TTTCTGCAAT TAAATCTAGC 102812 | ||||| || | ||||||| ||||| ||| || ||| || ||||||| | |||| |||| A-TAAAGACA TCCCAGGCTT TCTTCCTCTT TATTCTCAGC TTTCTGCCAA TAAACCTAGA 1382 CCTACTTAAA TGCTACTATT TCATACATTC A-TATTGAAT ATAATAGCTT GCTGAGTACG 102753 ||||||||| ||||| | |||| ||||| | |||| || |||||||||| |||||||||| TCTACTTAAA ---TACTACT TCATGCATTC ATTATTTGAT ATAATAGCTT GCTGAGTACG 1439 TTGTACTCAC CCTTGCTTCA ACCCCACCTT TTTCAGAGTC ATTTTGGAGT TCTTGCCAAA 102693 |||||||||| |||||||||| | ||||||| ||||| ||| |||||||| |||||| | TTGTACTCAC CCTTGCTTCA A--CCACCTT TTTCAAAGTA TATTTGGAGT TCTTGCTGAT 1497 GCTGGGAGTT CAATCACATA AGTTAGTTTC ATTCTAACTT AATTCTCAAG TCTAGATTAG 102633 |||||||||| |||||||||| |||||||| | || |||||| ||| ||||| ||||| | | GCTGGGAGTT CAATCACATA AGTTAGTTCC CTTTTAACTT AATCTTCAAG TCTAGGTAAT 1557 ATAGATGGTT TAGGTCTATA GCCAAACATT AGAGTTAAGT CATTCTATAG CTTTTGCTGT 102573 || |||||| || ||||||| | ||||| ||||||| || |||| || || ||| |||||| TTAAATGGTT TAAGTCTATA GTAAAACAAC AGAGTTAGGT CATTTTAAAG CTTCTGCTGT 1617 ATTAGTTAGC CACAAGTTTT TAAATACCC- A-TATATTTT GTAATAATAT ATCCTTTGGA 102515 | |||||||| || || | ||||||||| | || || | |||||||||| ||||| | AATAGTTAGC CAGAATCTCG TAAATACCCT ATTACTTTAT GTAATAATAT CTCCTTCAAA 1677 GTCTTATTCA AACGTATGCA ATGAAGATCC AGATTGTTGA ACATGTACCA ATTTACTAAT 102455 | | | | || ||||||| | || ||||| ||||| |||| | |||| || | |||| || GCTATGTCTA AATGTATGCA AAGACGATCC AGATTATTGA AGCTGTATCA ACCTACTGAT 1737 CCAGGGCTTG ATACAGTTTA AACATGTCGG TTTCCGAATC ATTAGTTTCA GGACCTGACA 102395 |||||||||| |||||| ||| |||||||||| |||| ||||| |||||||| ||||| |||| CCAGGGCTTG ATACAG-TTA AACATGTCGG TTTCTGAATC ATTAGTTTTG GGACCCGACA 1796 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|37991315|dbj|AK121692.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071L01, full insert sequence 1 CACACATCAA CAGAGCCTCG AGCTCCCTTT CTCTCTCTCC ATCCATGGCC GATCGTCGAC 61 GCCGTCGGTC GATCTCCCCA TCCGTAGCTC CACCTCCCCT ATCCTCGCGA CACCGGCTTC 121 GCCTCCATCC GGCGAGTCAG TTTTTCCCCT TTCCCCTCTC CCTCCACCTC TAAGTCAAGC 181 CACCACCGCC ATCATCCATG CCGGCTCGAG GTGAGCCCTT GCCGCCGCCG TTCCGGCTAT 241 ATATCTCTCC CTCTCGGCCA GCCACCGACC TCCCCGGGTG CGCGTCGCTC GGGAACACGC 301 GTGGCCGCTG TCGTCGAGGC CGTTCATCCA CCGGAGCATC GGCGCCCCTC CTCTCCCTTC 361 TCTCTGTTTG CTCGGCTGGA AGAGAAGAAG AAGCAGAAGA AGGAAGGAGG AAGAAGAAAG 421 AGAAAAGAAG AAGAAGAGAC AAAGAACTGA CAGGTGGGCC CCTGTACAGT ACTATTTCAT 481 AATTTCCCTA TTTAATTCAA ATTCTATTCT TTAGAAGTCC ATATCTCCTA AACCGTAGAT 541 CCGATTCCAG TGAAACTTGG ACCTAAATTC ATCTAAATTC AAAATCTACA TTTTGATATC 601 AAATTTTCTA TTTTAAGATT TTATTTGAAT TTATTCAAAT ACCGTTTGAA TTTATATTTG 661 ACTTTTCAAA TATTTTCCTT TATCCCAATT ACCCTTTAGC CACTAAAAAG CTGTCGGTTG 721 GAACTTTACG CCTTCCATGG AGACATTCGC GGTTTTCTAT CCCCGACGTT GAACCGTTGG 781 TTGTAAAGCC CGGCATAAAC CAAACCCAAG GTCAAAGTGC TGCTCCTGGC ACCCCACGCC 841 TTGATGCGTA TAGCGGTCGG AGCTTCACTA TTCCATCGAC CTCCATAGCA CGCCGCACAG 901 TTAGCTCTCG GACTCTGTGT GATCCTAGCC GCTCCGCTGC CACCCACGGT TGTCGAAGTA 961 ACACTTCCGC CCTACTAAAC CTGCACCTAC CTCCTATTCC CTCTAGCCGA TATGATGTCT 1021 GCTGACACCG GCTAGAGAAG ACACTAAATC TAGTCGTTAT GTTGCCAACT CTAGCAACAA 1081 CTAGCAAACA ACCAAATCCT AGCCGATACC CTGCTAGTCA AATCCCAATT GTCATCCAAA 1141 TTTCATACCC TCTACAATAC CACTTATCCA CCATACTCTC AGCCTCATAC TTTTTGTCTA 1201 TCAGAACCTA TACATAAAAT ATAGAGCCTG GCCGATATAT TGCCCTACTC CTCAATCGGC 1261 CTAAATATAA CCAAACCCTA GGTATAATCT TACACAAACC TACCATCAGC CAATACCAGT 1321 CACATATCTG CTCAACCAAT TCAATTATCC ACTATACTCC CTATCCACCA ACCAATCAAA 1381 GTCTGCACAT AAAATATAGG TGATCTTAGC CGCTTAATTC CCTCTCCACC CCAGCTGCCA 1441 ACTCTTTATA ACCCACACAT AAAATATCAG CCCAGTAATC CATATACCCT ATAAAAGAGA 1501 TAGGCTATAC ACTAAATCCT AACCCTCCCA ACCGTTTATC TCTTTCTTGC TATTTTATGG 1561 CTTTTATTGA ATTTGGTTCT TCCTCTTCTG TAGTAGAGTC TATTATATTT TGGATGGCAA 1621 CCTGTGGTAT TTCAAAGATC AGATAATCAG GTTGCCTATC TCGCATTTAT TTGCGTTGGA 1681 GCAAGGCAAG TTATTATTCC TCTCCTTTGA GCATAATAAT CCTATATTCT ATATTTCCAG 1741 TATCTTGTGC ATTAGCCATA CATGATTCTA AATGCATAAC CTGAATATAT AGCAAACCAG 1801 ATATATGCTA GATTTTGCTT AGCCATGCCT AGTTAGATTA CATAAAATAT AATAAACTTA 1861 GATTGGAATA GTACGGTAGA AATGGTTGAT TTCCGGGTGG CTAGTACTGT TCCAACCGAC 1921 ATAAAATTGC CAAGTACATG TGAAGAACAT ACGAGTACGA CCGCAATTCT CGTATGGGCA 1981 TAGACCTAGC TGATTAAGTT ATCTAGCAAA GGTGGTACCT CTATACAATG GTTCTATTTT 2041 AAGTCCTCGA GCAGGAGGCA AATTTACGCC GAGCAGGGCG ATTGTGATAT TTACCGAGGC 2101 ACAGGTAAAT ATATGAGATT TATTGATGTC GACTTGTTTG TGAACCCTGA TTGCGATGAC 2161 ATGGTGTCAT ACAATCAGTT CTCTCTAAAG ACCTTGGGAA CGCTAGAACT CCTCTCGCTG 2221 CTGATAACGT TACGTTCAGA GCGTATGGGG ACTAGAGTTT ATGGAACAGG TACCACTGAT 2281 GTTAGTAACC GAAAAGCTTT GCCATGACAA GGCTAATGTG TTTGGCACGT CATGGATTGC 2341 GGGTAAAGCG TACATTTACT GCAGTAAAGT ATAAATGAAT CTATTCGAAT AGCCGTGCTC 2401 ACGGATTTGA GTATTGAGAC TCATATGGTA TTTGGTTAGA AACTTTATTC CAAACTTTAT 2461 TAAATACTGT TGCATTTAAA ACATTTTAGG CTTTCTTCCT CTATATTCTT TGCTTTCTGC 2521 AAGTAAACCT AGCTCTACTC AGATATTACC ATTTCATGCA TTCATTATTG AATATAATAG 2581 CTTGCTGAGT ACGTTGTACT CACCCTTGCT TCAACCCTTT TTTTTTCCAG AGTCAATTTA 2641 ATGTTCTTAC CGAAGCCGGG AGTTCAATCA TATAAGTTAG TGTCATTTCA ATCTAATTCT 2701 CAAGTCTAGA TTAGATAGAT GGTTTAAGTC TATAGCAAAA CATTAGAGTT GGCTCATTCT 2761 ATAGCTTCTA CTGTAATAGT TAGCCACAAA TTTGTAAATA CCCGTATATT TTGTAATAAC 2821 ATCTCCTCTG GAGCCTTGTT CAAATGC Genomic Template: file=OSchr10, strand=-, from=105189, to=102297, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 103335 102500 ( 836 n); cDNA 2012 2847 ( 836 n); score: 0.849 MATCH OSchr10-v3- 37991315+ 0.849 836 0.294 C PGS_OSchr10-v3-_37991315+ (103335 102500) Alignment (genomic DNA sequence = upper lines): GTGGTACCTC TGTACAGTGG TTCCTTTTGT AAGTCCTCGC GCAGGAGGCA AATTTACGCC 103276 |||||||||| | |||| ||| || || || | ||||||||| |||||||||| |||||||||| GTGGTACCTC TATACAATGG TT-CTATTTT AAGTCCTCGA GCAGGAGGCA AATTTACGCC 2070 GCGAAGGGCG ATTGTAATAT TTACTGAGGC GCAGGTAAAT ATTTGAGATA AATTATGATG 103216 | | |||||| ||||| |||| |||| ||||| ||||||||| || |||||| | | ||||| GAGCAGGGCG ATTGTGATAT TTACCGAGGC ACAGGTAAAT ATATGAGATT TA-T-TGATG 2128 ACTAGTCTGT TTGTGAACCC TGATTGCGAT GACATGGTGT CATACGATCA GTTCTCTCTA 103156 | | | ||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| TCGACT-TGT TTGTGAACCC TGATTGCGAT GACATGGTGT CATACAATCA GTTCTCTCTA 2187 AAGACCCCGG GAACGCCAGA ACTCCTCTCG CTGCTGATAA CGTTACGTTC AGAGCGCATG 103096 |||||| || |||||| ||| |||||||||| |||||||||| |||||||||| |||||| ||| AAGACCTTGG GAACGCTAGA ACTCCTCTCG CTGCTGATAA CGTTACGTTC AGAGCGTATG 2247 GGGACTAGAG TTCATGGAAC AAGTGCCACA ATTGTTAATA ACCTAATA-A TAGGCCATGA 103037 |||||||||| || ||||||| | || |||| ||||| || ||| || | | ||||||| GGGACTAGAG TTTATGGAAC AGGTACCACT GATGTTAGTA ACCGAAAAGC TTTGCCATGA 2307 CTAACCTAAT G-AATTGGCA AGTCGTGGAC TGCGGGTAAA GCGTACATCT ACTGCAGTAG 102978 | | ||||| | |||||| ||| |||| |||||||||| |||||||| | ||||||||| CAAGGCTAAT GTGTTTGGCA CGTCATGGAT TGCGGGTAAA GCGTACATTT ACTGCAGTAA 2367 AATATTCATG AAACTATTCG AATAGTCGTG CTCACGGAAT TGAGTACCGG GACTCATATG 102918 | ||| ||| || ||||||| ||||| |||| |||||||| | |||||| | |||||||||| AGTATAAATG AATCTATTCG AATAGCCGTG CTCACGGATT TGAGTATTGA GACTCATATG 2427 GTATTTGATT AGAAACCTAA TTCAAGATTT TACTAAATAC TGTTGCATTA AAGTCATTAC 102858 ||||||| || |||||| | | ||| | | || || ||||||| ||||||||| || |||| GTATTTGGTT AGAAACTTTA TTCCAAACTT TATTAAATAC TGTTGCATTT AAAACATTTT 2487 AGGCTTTCTT CTTCTACATC CTCTGCTTTC TGCAATTAAA TCTAGCCCTA CTTAAATGCT 102798 |||||||||| | |||| || || ||||||| ||||| |||| ||||| ||| || | || | AGGCTTTCTT CCTCTATATT CTTTGCTTTC TGCAAGTAAA CCTAGCTCTA CTCAGATATT 2547 ACTATTTCAT ACATTCA-TA TTGAATATAA TAGCTTGCTG AGTACGTTGT ACTCACCCTT 102739 || ||||||| |||||| || |||||||||| |||||||||| |||||||||| |||||||||| ACCATTTCAT GCATTCATTA TTGAATATAA TAGCTTGCTG AGTACGTTGT ACTCACCCTT 2607 GCTTCAACCC CACCTTTTT- CAGAGTCATT TTGGAGTTCT TGCCAAAGCT GGGAGTTCAA 102680 |||||||||| ||||| |||||||| | || ||||| | || |||| |||||||||| GCTTCAACCC TTTTTTTTTC CAGAGTCAAT TTAATGTTCT TACCGAAGCC GGGAGTTCAA 2667 TCACATAAGT TAGTTTCATT CTAACTTAAT TCTCAAGTCT AGATTAGATA GATGGTTTAG 102620 ||| |||||| |||| ||||| || |||| |||||||||| |||||||||| ||||||||| TCATATAAGT TAGTGTCATT TCAATCTAAT TCTCAAGTCT AGATTAGATA GATGGTTTAA 2727 GTCTATAGCC AAACATTAGA GTTAAGTCAT TCTATAGCTT TTGCTGTATT AGTTAGCCAC 102560 ||||||||| |||||||||| ||| |||| |||||||||| | ||||| | |||||||||| GTCTATAGCA AAACATTAGA GTTGGCTCAT TCTATAGCTT CTACTGTAAT AGTTAGCCAC 2787 AAGTTTTTAA ATACCCATAT ATTTTGTAAT AATATATCCT TTGGAGTCTT ATTCAAACGT 102500 || ||| ||| |||||| ||| |||||||||| || || |||| ||||| ||| |||||| | AAATTTGTAA ATACCCGTAT ATTTTGTAAT AACATCTCCT CTGGAGCCTT GTTCAAATGC 2847 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32988788|dbj|AK103579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133A01, full insert sequence 1 GGTCATCATA GCTTGAAGCT CTTCCTCTCT CTCCTCCCAT GGCCGATCGT CGACGCCGTC 61 GGTCGATCTC CCCATCCGTA GCTCCTCTTC CCCTCTCCTC GCACCACCGG CTTCGCCTCC 121 ATCCGGCGAG TCCATTTTTC CCCTTTCCCC TCTCCCTCCA CCTCTAAGTC AAGTCACCAC 181 CACCATCATC CATGCCGACT CATGGTGAGC CCTTGCCGCC GCTGTTCCGG CCATCTCCCT 241 CACTCCCTCC ACCTGCCACT ACCCTCACCG GGTGCGCGTC GTCCGGGAAC ACGTGTGTCC 301 GCCGGCGTCG CAACCTCTCG ACCACCGGAG CACCGGCGCC CAACCTCTCT CTCCTCTGTG 361 TTCTCGGCAG GAAGAAGAAG GAAAGAAGAA GACGGGAGAA GGAGAGAGAA AGAGAAAAGA 421 AAAAGAAAAG GAGAACGGAG TGACAGGTGG GCCCTTCTAC AGTACAATTT CGTATTTTCT 481 AGATTTAATT CAAATCTAAT CTTTAGAAGC CCATATCTCC TACACCATAG ATCCGATTCC 541 AGTCAAACTT GGACCTAAAT TCATCTAAAT TCAAAAGCTA CATTTTGATA TCAAATTTGC 601 TATTTTACTA TTTTATTTGA AATTCCTTCA TGCCATTTGA ATTTATATTT GACTTTCGAA 661 TATTTCCTTT TTACTCCAAA ATAGCCTTTA GCCACTAAAA AGCCGCCGGT TGAAACTTTA 721 CGCCTTCCAT GGGGACGTTC GCGCGGTCTA CTGGCCCCGA CGTCGAACCG TTGGTTGTAA 781 AGCCCGGCAG AACCCAAACC CAAGGTCAAA GTGCTGCTCC TGGCACCCTA CGCCTCGACG 841 CGTATAACAG TCGGAGCTTC ACTATTCCCT CGACCTTCAC AGCACGCCGC ATAGTTAGCT 901 CTCGAGCTCT GTGTGATCCT AGCCGCTCCA CCGCCACCCA CGGTTGTTGG AGTAACACTC 961 CACCCCCACC AAACCTATAC CAACCTCCTA TTCCTCTAGC CGATATGTTG TCGGTCGACA 1021 CCGGCTAGAG AAAGGTATCA AATCTACTCG TTATGCTCTA GCATCGACTA GCATACAACC 1081 AACCAAACCC TAGCCGATAT GTTGCCCTAC TTCACAATCG GCTTAAATAC CACCAAACCC 1141 TAGGTATCAT ACTGCCCAAA CCTACCACCA GCCAATACTA GCCACATACT CACTTAACCA 1201 GTTATATCCT TTATTCTCCA AGCAACCAAA ACCCACACAT GAAATATAAG CGCCAGTAGT 1261 TGCTTAATCC CTTCTAGCCT CCAACTCTCT AGAATATCCG CATAAAATAT CAGCACCGTA 1321 ATCCATATAC CCTATAAAAT AAAATAGATA GACTATATCC TAAACCCTAG CCCTCCTAAC 1381 TGTTTATCTC TTTCTTGCTA TTATATGGAT TTTATTGAAA TTGGTTCTTC ATCTTTCTTA 1441 GTAGAGTCTA TTTTATTTTG GATGGCAACC TGTGATATTT CGAGGATTGG ATAATAAGGT 1501 TGCTTATCTC GGATTTATTT GCGTTGGAGC AAGGCAAGTT ATTATTCCTC CCCTTGAGCA 1561 TAATTACCCT ATATTCTATA TCTCTTTTCT ATGCATTAGT CATTCATGAT TTTGAATGCG 1621 TAACCTGAAC ATATAGCAAA CCAGATATGC TAGCTTTTGC TTAGCCCTGC CTAGTTAGGC 1681 TGCATAAAAA TATAATGAAC CTAGATTGGG ACAGTACGTA AGATTTGGTT GATTTCTGGG 1741 TGGCTAGTAC TGTCCCGGTC GATATAATTG CCACCAAATA CTTATGTCAA ACGAACGAGT 1801 ATGACCACAG CTTCTTGAAT GGGGACAGAC CTAGATATTA TGTTAATTAG CAATGTGGTA 1861 CCTCTGTACA GTGGTTCCTT TTGTAAGTCC TCGCGCAAGA GGCAATCTTA TGCCGAGCAG 1921 GGCATCTTAT GATATTTACC GAGGCGCAGG TAAATATATT GATTTTCGCT CATGAGCTGT 1981 GTGTGTGATT TTATGTAAAC CTGGTTGAGA TGACGGGGGT CTCTCAACCC GTTCTCTCTA 2041 AAAACCCCGG GAACGCCAGA ACTCCTCTCG CTGCTGATAA CGTTACGTTC AGAGCGCATA 2101 GGGACTAGAG TTCATGGAAC AGGTGCCACA ATTGTTAATA ACCTAATAGT GGGCCATGAC 2161 TAAGCTAATG AATATTGGCA AGTCATGGAC TGCCGGTAAA GCGTACATTT ACTGCAGTAA 2221 AGTGAAAATG AATCTATTCG AATAGCCGTG CTCACGGATT TGAGTATCGG GACTCATATG 2281 GTATTTGGTT AGAAACCTAA TTCAAGATTT TATTAAATAC TGATGCATTT CAAACATCAT 2341 AGGCTTTCTT CTTCTACATT ATCTGCTTTC TGCAAGTAAA TCTAGTCCTA CTCAAATACT 2401 GCTATTTCAT ACATTCATAT TGAATATAAT AGCTTGCTGA GTACATTGTA CTCACCCTTG 2461 CTTCAACCCC ATCTTTTTCA GAGTCCATTT GGAGTTCTTA TCGAGGCCGG GAGTTCAATC 2521 ACATAAGTTA GTTCCCTTTT AACTTAATCT TCAAGTCTAG GTTATTTAGA TGGTTTAAGT 2581 CTATAGTAAA ACAGCAGAGT TAGGTCATTC TAAAGCTTCT GCTGTAATAG TTAGCCACAA 2641 TCTCGTAAAT ACCCTATTAC TTTATGTAAT AATATCTCCT TCAAAGC Genomic Template: file=OSchr10, strand=-, from=105115, to=102254, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 104101 102527 (1575 n); cDNA 1089 2670 (1582 n); score: 0.832 MATCH OSchr10-v3- 32988788+ 0.832 1575 0.586 C PGS_OSchr10-v3-_32988788+ (104101 102527) Alignment (genomic DNA sequence = upper lines): CCTAGTTGAT ACGCTATCCT ATTCCATAAT CAACTTAACT ATAACCAAAC CCTAGATATT 104042 ||||| ||| | | | ||| | | || ||| | ||||| | | ||||||| ||||| ||| CCTAGCCGAT ATGTTGCCCT ACTTCACAAT CGGCTTAAAT ACCACCAAAC CCTAGGTATC 1148 ATACTACCTA AACCTACCAC CAGCCAATAC TAGCCACATA CTCACTTAAC CAGTTATATC 103982 ||||| || | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTGCCCA AACCTACCAC CAGCCAATAC TAGCCACATA CTCACTTAAC CAGTTATATC 1208 CTTTATTCTC CAAGCAACCA AAACCCACAC ATGAAATAT- AGCGACATTA GTTGCTTGAT 103923 |||||||||| |||||||||| |||||||||| ||||||||| |||| || || ||||||| || CTTTATTCTC CAAGCAACCA AAACCCACAC ATGAAATATA AGCGCCAGTA GTTGCTTAAT 1268 CCCTTCTCTA CCTTAGCCTC CAACCCTCGA GAACCTCCAC ACAAAATATT AGCCCAATAA 103863 || || | | ||||||| |||| ||| | ||| ||| | | ||||||| ||| | ||| -CC--CT-T- -C-TAGCCTC CAACTCTCTA GAATATCCGC ATAAAATATC AGCACCGTAA 1321 TCCCTATACC CAATAAAA-A GGAGATATTT AC-A-CCCCC AAACCC-AGC CTTTCTCGCT 103807 ||| |||||| | |||||| | | | || || | || |||||| ||| | | || || TCCATATACC CTATAAAATA AAATAGATAG ACTATATCCT AAACCCTAGC CCTCCTAACT 1381 CTTTATTGTT TTCTTGCTAT TTCATGATTT TTATTGAATT TGGTTCTTCG TCTTTCTTAG 103747 ||||| | |||||||||| | ||| || |||||||| | ||||||||| |||||||||| GTTTATCTCT TTCTTGCTAT TATATGGATT TTATTGAAAT TGGTTCTTCA TCTTTCTTAG 1441 TAGAGTCTAT TTTATTTTGG ATGGCAACCT GTATTATTTC GAGGATCGGA TAATCAGGTT 103687 |||||||||| |||||||||| |||||||||| || |||||| |||||| ||| |||| ||||| TAGAGTCTAT TTTATTTTGG ATGGCAACCT GTGATATTTC GAGGATTGGA TAATAAGGTT 1501 GCCTATCACG GATTTATTTG CATTGGAGCA AGGCAAGTTA TTATTCCTCT CCTTTGAACA 103627 || |||| || |||||||||| | |||||||| |||||||||| ||||||||| || |||| || GCTTATCTCG GATTTATTTG CGTTGGAGCA AGGCAAGTTA TTATTCCTC- CCCTTGAGCA 1560 TAAATGCCCT ATATTCTATA CCTTTATTCT ATGCATTAGT CATTCATGAT TTCGAATGCA 103567 ||| | |||| |||||||||| || | |||| |||||||||| |||||||||| || |||||| TAATTACCCT ATATTCTATA TCTCTTTTCT ATGCATTAGT CATTCATGAT TTTGAATGCG 1620 TAAACTG-A- ATATAGCAAA CCAGATATGC TAGCTTTTGC TTAGCCATGC C-AGTTAGAC 103510 ||| ||| | |||||||||| |||||||||| |||||||||| |||||| ||| | |||||| | TAACCTGAAC ATATAGCAAA CCAGATATGC TAGCTTTTGC TTAGCCCTGC CTAGTTAGGC 1680 TGCAT-AAAA TATAATGAAC TTAGATTGGA ACAGTACGGT AAAAAATGGT TGATTTCCGG 103451 ||||| |||| |||||||||| |||||||| ||||||| || || | |||| ||||||| || TGCATAAAAA TATAATGAAC CTAGATTGGG ACAGTAC-GT AAGATTTGGT TGATTTCTGG 1739 GTGGCTAGTA CTATTCCAAC CGACATAAGA CTGCCCAAGT ACTTGTGAAG AACGAACGAG 103391 |||||||||| || | || ||| |||| |||| | |||| || |||||||||| GTGGCTAGTA CTGTCCCGGT CGATATAATT GCCACCAAAT ACTTATGTCA AACGAACGAG 1799 TACGACCGCA GCTTCTAGAA TGGGGACAGA CCTAGATATT ATGTTAATTA ACAATGTGGT 103331 || |||| || |||||| ||| |||||||||| |||||||||| |||||||||| ||||||||| TATGACCACA GCTTCTTGAA TGGGGACAGA CCTAGATATT ATGTTAATTA GCAATGTGGT 1859 ACCTCTGTAC AGTGGTTCCT TTTGTAAGTC CTCGCGCAGG AGGCAAATTT ACGCCGCGAA 103271 |||||||||| |||||||||| |||||||||| |||||||| | |||||| || | |||| | | ACCTCTGTAC AGTGGTTCCT TTTGTAAGTC CTCGCGCAAG AGGCAATCTT ATGCCGAGCA 1919 GGGC-GATTG TAATATTTAC TGAGGCGCAG GTAAATAT-T TGA-GATAAA TTATGA--TG 103216 |||| || | |||||||| ||||||||| |||||||| | ||| | | |||| || GGGCATCTTA TGATATTTAC CGAGGCGCAG GTAAATATAT TGATTTTCGC TCATGAGCTG 1979 ACT-AGTCTG TTTGTG-AAC CCTGATTGCG ATGACATGGT GTCATACGAT CAGTTCTCTC 103158 | || ||| || || |||| ||| | ||||| || ||| | | | |||||||| TGTGTGTGAT TTTATGTAAA CCTGGTTGAG ATGAC-GGGG GTCTCTCAAC CCGTTCTCTC 2038 TAAAGACCCC GGGAACGCCA GAACTCCTCT CGCTGCTGAT AACGTTACGT TCAGAGCGCA 103098 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAACCCC GGGAACGCCA GAACTCCTCT CGCTGCTGAT AACGTTACGT TCAGAGCGCA 2098 TGGGGACTAG AGTTCATGGA ACAAGTGCCA CAATTGTTAA TAACCTAATA ATAGGCCATG 103038 | |||||||| |||||||||| ||| |||||| |||||||||| |||||||||| | ||||||| TAGGGACTAG AGTTCATGGA ACAGGTGCCA CAATTGTTAA TAACCTAATA GTGGGCCATG 2158 ACTAACCTAA TG-A-ATTGG CAAGTCGTGG ACTGCGGGTA AAGCGTACAT CTACTGCAGT 102980 ||||| |||| || | ||||| |||||| ||| ||||| |||| |||||||||| ||||||||| ACTAAGCTAA TGAATATTGG CAAGTCATGG ACTGCCGGTA AAGCGTACAT TTACTGCAGT 2218 AGAATATTCA TGAAACTATT CGAATAGTCG TGCTCACGGA ATTGAGTACC GGGACTCATA 102920 | | | | |||| ||||| ||||||| || |||||||||| ||||||| | |||||||||| AAAGTGAAAA TGAATCTATT CGAATAGCCG TGCTCACGGA TTTGAGTATC GGGACTCATA 2278 TGGTATTTGA TTAGAAACCT AATTCAAGAT TTTACTAAAT ACTGTTGCAT TAAAGTCATT 102860 ||||||||| |||||||||| |||||||||| |||| ||||| |||| ||||| | | ||| TGGTATTTGG TTAGAAACCT AATTCAAGAT TTTATTAAAT ACTGATGCAT TTCAAACATC 2338 ACAGGCTTTC TTCTTCTACA TCCTCTGCTT TCTGCAATTA AATCTAGCCC TACTTAAATG 102800 | |||||||| |||||||||| | ||||||| ||||||| || ||||||| || |||| |||| ATAGGCTTTC TTCTTCTACA TTATCTGCTT TCTGCAAGTA AATCTAGTCC TACTCAAATA 2398 CTACTATTTC ATACATTCAT ATTGAATATA ATAGCTTGCT GAGTACGTTG TACTCACCCT 102740 || ||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CTGCTATTTC ATACATTCAT ATTGAATATA ATAGCTTGCT GAGTACATTG TACTCACCCT 2458 TGCTTCAACC CCACCTTTTT CAGAGTCATT TTGGAGTTCT TGCCAAAGCT GGGAGTTCAA 102680 |||||||||| ||| |||||| ||||||| | |||||||||| | | | || |||||||||| TGCTTCAACC CCATCTTTTT CAGAGTCCAT TTGGAGTTCT TATCGAGGCC GGGAGTTCAA 2518 TCACATAAGT TAGTTTCATT CTAACTTAAT TCTCAAGTCT AGATTAGATA GATGGTTTAG 102620 |||||||||| ||||| | || ||||||||| |||||||| || ||| || ||||||||| TCACATAAGT TAGTTCCCTT TTAACTTAAT CTTCAAGTCT AGGTTATTTA GATGGTTTAA 2578 GTCTATAGCC AAACATTAGA GTTAAGTCAT TCTATAGCTT TTGCTGTATT AGTTAGCCAC 102560 |||||||| ||||| ||| |||| ||||| |||| ||||| ||||||| | |||||||||| GTCTATAGTA AAACAGCAGA GTTAGGTCAT TCTAAAGCTT CTGCTGTAAT AGTTAGCCAC 2638 AAGTTTTTAA ATACCCATAT ATTTTGTAAT AAT 102527 || | ||| |||||| | | ||| | | ||| AATCTCGTAA ATACCCTATT ACTTTAT-GT AAT 2670 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32994322|dbj|AK109113.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C04, full insert sequence 1 ACACATCAAC AGAGCCTCGA GCTCCCTTTC TCTCTCTCCA TCCATGGCCG ATCGTCGACG 61 CCGTCGGTCG ATCTCCCCAT CCGTAGCTCC ACCTCCCCTA TCCTCGCGCC ACCGGCTTCG 121 CCTCCATCCG GCGAGTCCGT TTTTCCCCTT TCCCCTCTCC CTCCACCTCT AAGTCAAGCC 181 ACCACCGCCA TCATCCATGC CGGCTCGAGG TGAGCCCTTG CCGCCGCCGT TCCGGCTATA 241 TATCTCTCCC TCTCGGCCAG CCACCGACCT CCCCGGGTGC GCGTCGCTCG GGAACACGCG 301 TGGCCGCTGT CGTCGAGGCC GTTCATCCAC CGGAGCATCG GCGCCCCTCC TCTCCCTTCT 361 CTCTGTTTGC TCGGCTGGAA GAGAAGAAGA AGCAGAAGAA GGTAGGAGGA AGAAGAAAGA 421 GAAAAGAAGA AGAAGAGACA AAGAACTGAC AGGTGGGCCC CTGTACAGTA CTATTTCATA 481 ATTTCCCTAT TTAATTCGAA TTCTATTCTT TAGAAGTCCA TATCTCCTAA ACCGTAGATC 541 CGATTCCAGT GAAACTTGGA CCTAAATTCA TCTAAATTCA AAATCTACAT TTTGATATCA 601 AATTTTCTAT TTTAAGATTT TATTTGAATT TATTCAAATA CCGTTTGAAT TTATATTTGA 661 CTTTTCAAAT ATTTTCCTTT ATCCCAATTA CCCTTTAGCC ACTAAAAAGC TGTCGGTTGG 721 AACTTTACGC CTTCCATGGA GACATTCGCG GTTTTCTATC CCCGACGTTG AACCGTTGGT 781 TGTAAAGCCC GGCATAAACC AAACCCAAGG TCAAAGTGCT GCTCCTGGCA CCCCACGCCT 841 TGATGCGTAT AGCGGTCGGA GCTTCACTAT TCCATCGACC TCCATAGCAC GCCGCACAGT 901 TAGCTCTCGG ACTCTGTGTG ATCCTAGCCG CTCCGCTGCC ACCCACGGTT GTCGAAGTAA 961 CACTTCCGCC CTACTAAACC TGCACCTACC TCCTATTCCC TCTAGCCGAT ATGATGTCTG 1021 CTGACACCGG CTAGAGAAGA CACTAAATCT AGTCGTTATG TTGCCAACTC TAGCAACAAC 1081 TAGCAAACAA CCAAATCCTA GCCGATACCC TGCTAGTCAA ATCCCAATTG TCATCCAAAT 1141 TTCATACCCT CTACAATACC ACTTATCCAC CATACTCTCA GCCTCATAGA G Genomic Template: file=OSchr10, strand=-, from=105189, to=104251, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 105189 104251 ( 939 n); cDNA 103 1052 ( 950 n); score: 0.775 MATCH OSchr10-v3- 32994322+ 0.775 939 1.000 G PGS_OSchr10-v3-_32994322+ (105189 104251) Alignment (genomic DNA sequence = upper lines): CTCGCGCCAC CGGGCTTGCC TTGATGAGGT GAACCCATTT TTCTAGTTTC CCCTCTCCCT 105130 |||||||||| ||| | ||| | || || || || ||| ||| |||| |||||||||| CTCGCGCCAC CGGCTTCGCC TCCATCCGGC GAGTCCGTTT TTCCCCTTTC CCCTCTCCCT 162 TAGCCGTCCT A-T-AAGCCA CTATAGCCA- CTTCTTTTAC CGGC-CGGAG CAAGCTTTTG 105074 || || | | |||||| | | |||| | || | | |||| || | ||| ||| CCACC-TCTA AGTCAAGCCA CCACCGCCAT CATC-CATGC CGGCTCGAGG TGAGCCCTTG 220 CCGCCGCCGT TCCGGCTTCA TATCTCACTT CCACTGCCGA CCTCTGCCGT CCCCGGATGC 105014 |||||||||| ||||||| | |||||| | | | ||| || | | | | |||||| ||| CCGCCGCCGT TCCGGCTATA TATCTCTCCC TCTCGGCCAG CCACCGACCT CCCCGGGTGC 280 GCGTCGACGG GGAACATGTT ATGTTGCCGA CGTCGCCGCG TTTCGGCCAC CGGAGGGCCG 104954 |||||| | |||||| | | || | ||||| || ||| |||| ||||| || GCGTCGCTCG GGAACACGCG TGGCCGCTGT CGTCGAGGCC GTTCATCCAC CGGAGCATCG 340 GCGCCCCGCT CGTCCTCTCT TCTCCCTCT- CTC-GCTGCC A-A-CGGAAG -AGGAGAAGA 104899 ||||||| | ||| || |||| | | ||| |||| | | |||| || |||||| GCGCCCCTCC TCTCC-CTTC TCTCTGTTTG CTCGGCTGGA AGAGAAGAAG AAGCAGAAGA 399 AAG-AAGACG --GGAGGAAG -GAGAAGAAA AAGAA-AAAG AAA-CACTGA CAGGTGGGCC 104845 | | | || | | || ||| || ||||| ||||| | | ||| ||||| |||||||||| AGGTAGGAGG AAGAAGAAAG AGAAAAGAAG AAGAAGAGAC AAAGAACTGA CAGGTGGGCC 459 CCTGCACAGT TCACTTTCAT AATTTTCCTA TTTAATTCAA AACCCAATCT TTAGAAGCTC 104785 |||| ||||| | |||||| ||||| |||| |||||||| | | | | ||| ||||||| | CCTGTACAGT ACTATTTCAT AATTTCCCTA TTTAATTCGA ATTCTATTCT TTAGAAGTCC 519 ATATCTCCTA AACCGTAGAT CCGAATCTAG TGAAACTTGG ACCTAAATTC ATCTAAATTC 104725 |||||||||| |||||||||| |||| || || |||||||||| |||||||||| |||||||||| ATATCTCCTA AACCGTAGAT CCGATTCCAG TGAAACTTGG ACCTAAATTC ATCTAAATTC 579 AAACCCTATA TTTTGATACC AAATTTGCTA TTTTATAATT TTATTTGAAT TTATTCAAAT 104665 ||| ||| | |||||||| | |||||| ||| ||||| ||| |||||||||| |||||||||| AAAATCTACA TTTTGATATC AAATTTTCTA TTTTAAGATT TTATTTGAAT TTATTCAAAT 639 ACCGTTTGAA TTTATAATTG CCTTTTCAAA TATTTCCTTT TAATCCAAAA TACCCTTTAG 104605 |||||||||| |||||| ||| ||||||||| ||||| | || | |||| || |||||||||| ACCGTTTGAA TTTATATTTG ACTTTTCAAA TATTTTCCTT T-ATCCCAAT TACCCTTTAG 698 CCACTAAAAA GCCGCTGGTT GAAACTTTAC GCCTTTCATG GAGACGTTTG CGGTCACCTA 104545 |||||||||| || | |||| | |||||||| ||||| |||| ||||| || | |||| ||| CCACTAAAAA GCTGTCGGTT GGAACTTTAC GCCTTCCATG GAGACATTCG CGGTTTTCTA 758 GGCCCCGACG TCGAACCATT GGCTGTAAAG CCCGGCAAAA CTCAAACCCA AGGTCGAAGT 104485 |||||||| | ||||| || || ||||||| ||||||| || |||||||| ||||| |||| -TCCCCGACG TTGAACCGTT GGTTGTAAAG CCCGGCATAA ACCAAACCCA AGGTCAAAGT 817 GCTGCTCCTA GCACCCTACG CCTTGATGCG TATAATGATC GGAGCTTCAC TATCCCCTCG 104425 ||||||||| |||||| ||| |||||||||| |||| | || |||||||||| ||| || ||| GCTGCTCCTG GCACCCCACG CCTTGATGCG TATAGCGGTC GGAGCTTCAC TATTCCATCG 877 ACCTCCACAG CACGCCGCAC AGTTAGCTCT CTGGCTCTGT GTGATCCTAG CCGCTCCGCC 104365 ||||||| || |||||||||| |||||||||| | | |||||| |||||||||| ||||||||| ACCTCCATAG CACGCCGCAC AGTTAGCTCT CGGACTCTGT GTGATCCTAG CCGCTCCGCT 937 GCCACTCACG GTTGTCGGAG TAACACTTCC ACCCCACTAA ACCTACACAA ATCTCCTATT 104305 ||||| |||| ||||||| || |||||||||| ||| ||||| |||| ||| | |||||||| GCCACCCACG GTTGTCGAAG TAACACTTCC GCCCTACTAA ACCTGCACCT ACCTCCTATT 997 -CCTCTAGTC GTTATCCTTT TTGTTGACAC CGGCTAGAAA AGATACCAAA TCTAG 104251 ||||||| | | ||| | | || |||||| |||||||| | ||| || ||| ||||| CCCTCTAGCC GATATGATGT CTGCTGACAC CGGCTAGAGA AGACACTAAA TCTAG 1052 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32994387|dbj|AK109178.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-A01, full insert sequence 1 TCCAAATTCA AAAGGTTACA CTAAGGTGAG ACTAATCACG GTGAATCTGG TTGACCGCCC 61 GTAACCGCGG GCACGGCTTT TCGAATAGTT TTGCTCTGAT CAGAGGTGTA CAATTGTACC 121 CACAAGACAC AGCCCCACGA CACGTTTTCG TGCGCCGACA TGCCACCACG ACATATCGGA 181 AAGAGGCCGT GACAGGACCC TTCGCATAAC CCCTCTCTAG CCAAGCACAC CACACCTCAG 241 GTTTCACCCC CGTCCCCAGC GGGCCACGGG CAGTCCCCTC TCGTGCCTAG GTGAATCCGG 301 AAGCGACAGA GGCCGTCGCA GGGCCCGCCC CGCTCCATCA CGCCCACCCT TGCCTGGATG 361 CGTCGACTAG AGGAAAGCTA CACTACAAGC CCAGCCGTTG CCCACGCTGG CTTGTGGTAA 421 GTACGATAAG TTCTTCCAGG GCATCCCGCG AACCGGTCCT TAACTGCCAT GGGTGCGACC 481 AGCAAAACCA TGCACCCACA GCCCACCATG TAGTTTATTT TAATTAACCC ACGCCAAAGC 541 GGTGGCACTA ATCCAACAGA ACCATTGGAA CCAACAGTCT AAACATTATT ATGCTTTTCC 601 CCATTGTGAA CTAGTTGAAC TAAGCATGTC TAAGCAATTC CTAGTCCAAA CTCTAATCAT 661 GTTATACCCC AAGCTAACAA GGGAGCATGG TATTC Genomic Template: file=OSchr10, strand=+, from=108281, to=109416, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 108556 109251 ( 696 n); cDNA 1 695 ( 695 n); score: 0.825 MATCH OSchr10-v3+ 32994387+ 0.825 696 1.001 C PGS_OSchr10-v3+_32994387+ (108556 109251) Alignment (genomic DNA sequence = upper lines): CACCAGTTCA TTAAGCTAAA CTAGGGGTGA GACTAATTAC GGTGAATCTG GTCGACCGCC 108615 | | |||| | | || | ||| ||||| ||||||| || |||||||||| || ||||||| TCCAAATTCA AAAGGTTACA CTA-AGGTGA GACTAATCAC GGTGAATCTG GTTGACCGCC 59 CATAACCGCG GGCACGGCTA TTCGAATAGT TTTACTCTGA TCAGAGGTGT ACAACTATAC 108675 | |||||||| ||||||||| |||||||||| ||| |||||| |||||||||| |||| | ||| CGTAACCGCG GGCACGGCTT TTCGAATAGT TTTGCTCTGA TCAGAGGTGT ACAATTGTAC 119 CCACAAGACA CAGCCCCACG ACACGTTCCC GTGCGCCGAC ATGCCACCAC GACATACCGG 108735 |||||||||| |||||||||| ||||||| | |||||||||| |||||||||| |||||| ||| CCACAAGACA CAGCCCCACG ACACGTTTTC GTGCGCCGAC ATGCCACCAC GACATATCGG 179 AAAGAGGCTG TGACAGGACC CTTCGCATAA -CCCTCTCTA ACCGATCGCA CCACACCTTA 108794 |||||||| | |||||||||| |||||||||| ||||||||| || | | || |||||||| | AAAGAGGCCG TGACAGGACC CTTCGCATAA CCCCTCTCTA GCCAAGCACA CCACACCTCA 239 GGGTTCGCCC CCGTCCCCAG CAGGCAACGG GCAGCCCCCC CTTTGGTGCC GCGGTGAATC 108854 || ||| ||| |||||||||| | ||| |||| |||| ||| || | ||||| |||||||| GGTTTCACCC CCGTCCCCAG CGGGCCACGG GCAG--TCCC CTCTCGTGCC TAGGTGAATC 297 CGGAAGCCGA TCAACCGGAC ACCCCGGCCG ACCCAACTCC ATCACGCCCA CCCTCGCCTG 108914 ||||||| | | | | | |||| ||| |||| |||||||||| |||| ||||| CGGAAGCGAC AGAGGCCGTC -GCAGGGCCC GCCCCGCTCC ATCACGCCCA CCCTTGCCTG 356 GGTACGTCGG CTAGAGAAAA GCTACACTAC AAGCCCAGCC GTTGCCCACG CTGGCTTGTG 108974 | | ||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCGTCGA CTAGAGGAAA GCTACACTAC AAGCCCAGCC GTTGCCCACG CTGGCTTGTG 416 GTAAGTACGA TAAGTTCTTC CAGGGCATCC CGCGAACCGG TCCTTAACTG CCATGGGTGC 109034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAGTACGA TAAGTTCTTC CAGGGCATCC CGCGAACCGG TCCTTAACTG CCATGGGTGC 476 GACCAGCAAA ACCATGCACC CACAGCCCAC CATGTAGTGT ACTTTAATTA ACCAACACCA 109094 |||||||||| |||||||||| |||||||||| |||||||| | | |||||||| ||| || ||| GACCAGCAAA ACCATGCACC CACAGCCCAC CATGTAGTTT ATTTTAATTA ACCCACGCCA 536 TTGCGGTGGC ACTAATCCAA AGCTATTGCC AATAATCAA- AGTCTATGCT TTAGTGTG-- 109151 |||||||| |||||||| | | | || ||| |||||| | ||| | || AAGCGGTGGC ACTAATCC-A ACAGAACCAT TGGAACCAAC AGTCTAAACA TTATTATGCT 595 ATCCCCTTTT GTGCATTAGT TGAACTAAGC ATGGCTAAGC ATCTCCTAAA CCAACATCTA 109211 | ||| || ||| | |||| |||||||||| ||| |||||| | ||||| |||| |||| TTTCCCCATT GTGAACTAGT TGAACTAAGC ATGTCTAAGC AATTCCTAGT CCAAACTCTA 655 GTCATTTTGA TACCCAAGTT ATCAATGGCG TAAGGGAAAC 109251 |||| || |||||| | | ||| || | | || | | ATCATGTTAT ACCCCAAGCT AACAAGGGAG CATGGTATTC 695 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32994990|dbj|AK109781.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C01, full insert sequence 1 GTCGGGTCCT CCCCCAACCT CCAGCCGCTC GCCGCCGCGC CCGCAACCGC CGCCGCACCT 61 CACGCCCGCG CCTCCCGGGC CATGTCGTCC ACGTCGCCCT CGCGCCCGCG CCTCCCGTGC 121 CCACTTCCCC CTCTCTCCCG CTCGCCCGCG CTCCCGAGAC GGCCGGGATT CGATTTTCGA 181 ATCCCGCCTC TCTCTCCTCT CCCACTCCCC CACTTCGGCC GGCGATTCCC GCCTCTCCCG 241 GCCACGTCCG GCCCCCTCTC TCCCTATTTA AGCTCCGCCG CCACCCCCTC TCTCTTTTTT 301 CCCATTTCGC CGAACTCTCT CGTGCTCCCC ATCGCTCCCG CGCCGTGCAC CCACCCGCCG 361 CCGCCTTTCC CGCCACTCCG GCCGCCTCTA GCCGCCGCTA GGCTCGCCGC CGCATCGCGC 421 CGTCGCCGCC GTCGGGTTCG CGTGGCCAAG GTCCACCCCG TCCGCCCCTC CTCCGTCGAG 481 GTTCGCCGCC GGAGCGCCAT TCCCGCCGTG CGCCGGTCGT CCCGGACCCC GTCCGCCGCT 541 TGTCGACCTC CCTCTGTCGC TCCTCGTCGC CGGTCGTCGC CGCCCCCTCC GATTCCGATT 601 CTTCCGACGC TCCGGTGTAC TTCGAGATAG TCGCCGAGGT TCCTCCAGCT GCAGAGCAAG 661 AATATGAGTG TGTGTCCGAT GGTGGTTTCT CCGAGGAGTA GGCTTCGTCC GTGCCATCGA 721 GGATGCCTGT GGAGTGGTGT TCCCGCTGCA GTTCAAGTCA AGGCTTAGCT CCTGTTATCT 781 TTCGTTTTTC CGCTGCATTT ATGTAAGACT TTTATGATGT TTGTAAGACG TGGATCTGAA 841 TGTCAACATT GTCGTTTGTA TACCCCGGCC GGTCCTGGAC GGGGATTTTA ATGCACATTC 901 TGCTTGGAAT TCTATTCGGG Genomic Template: file=OSchr10, strand=+, from=115539, to=118552, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 115772 116093 ( 322 n); cDNA 195 515 ( 321 n); score: 0.786 Intron 1 116094 116193 ( 100 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0.96) Exon 2 116194 116289 ( 96 n); cDNA 516 614 ( 99 n); score: 0.750 Intron 2 116290 117951 (1662 n); Pd: 0.914 (s: 0.52), Pa: 0.000 (s: 0.19) Exon 3 117952 118252 ( 301 n); cDNA 615 920 ( 306 n); score: 0.819 MATCH OSchr10-v3+ 32994990+ 0.795 719 0.782 C PGS_OSchr10-v3+_32994990+ (115772 116093,116194 116289,117952 118252) Alignment (genomic DNA sequence = upper lines): TCCACCTCCA CCTCCCCACG TCGGCCGGCG AAATCGAGCC ACTCCCCGCC -GTTCCCGAC 115830 ||| | ||| | |||||| |||||||||| | || ||| ||||| ||| ||| | | TCCTCTCCCA CTCCCCCACT TCGGCCGGCG -ATTCCCGCC TCTCCCGGCC ACGTCCGGCC 253 CTCTTCGGCC CTATATAATC CATCCCCGCA TCCTCCTC-C TCATTTTTCC TTTTTCCGCC 115889 | || || |||| ||| | | |||| || |||| | || ||||||| ||| |||| CCCTCTCTCC CTATTTAA-G CTCCGCCGCC ACCCCCTCTC TCTTTTTTCC CATTT-CGCC 311 GGCCTCTCCC GAGCTCTCCA TCGCTCCCGC ACCGTGCACC CACCCGCCAC CGCCTCTTTC 115949 | ||||| | | |||| ||| |||||||||| ||||||||| |||||||| | ||||| | | GAACTCTCTC GTGCTCCCCA TCGCTCCCGC GCCGTGCACC CACCCGCCGC CGCCTTTCCC 371 ACTACTCCGG CCGCCTCCAG CCACTGCTAG GGCCGCCGCT GCACCGCACC GCCGCCGCCG 116009 | ||||||| ||||||| || || | ||||| | |||||| ||| ||| || | |||||||| GCCACTCCGG CCGCCTCTAG CCGCCGCTAG GCTCGCCGCC GCATCGCGCC GTCGCCGCCG 431 TTGGGTTCGT GTGGCCGAGG TCCACCTCGT CTACCCCTCC TCCGTCGAGG TTCGCCGCCG 116069 | ||||||| |||||| ||| |||||| ||| | ||||||| |||||||||| |||||||||| TCGGGTTCGC GTGGCCAAGG TCCACCCCGT CCGCCCCTCC TCCGTCGAGG TTCGCCGCCG 491 GAGCCCCATC CCCGTCGTGC GCCGGTAAGA AACGCCACGG CCGCCGCCTT CGGCCGGCGT 116129 |||| |||| |||| ||||| |||| GAGCGCCATT CCCGCCGTGC GCCG...... .......... .......... .......... 515 TCCCGCTTTC TATGCTCTCT CTCTCTCTCT CTCTCCCTCT AATCCTCTCC ATTTCGTTCC 116189 .......... .......... .......... .......... .......... .......... 515 TTAGGTCGTC CCGGACCCCG TCCGCCGCTT GTCGACCTCC CTCCGTCGTT CCTCGTCGCC 116249 |||||| |||||||||| |||||||||| |||||||||| ||| |||| | |||||||||| ....GTCGTC CCGGACCCCG TCCGCCGCTT GTCGACCTCC CTCTGTCGCT CCTCGTCGCC 571 GGTCGCCGTC GTCTCCCTCC -ACGCCG-GT CGGAC--CCC TTCGGTGAGG ACGTCCCTCC 116305 ||||| || | | | |||||| | ||| | | | | | | || GGTCGTCGCC G-CCCCCTCC GATTCCGATT CTTCCGACGC TCCG...... .......... 614 TTCCCCTTCC TTCTTCCTCC TCTCTTTTCC CTGGTAGCGC CGCCGCCGTC TGCCGAATCA 116365 .......... .......... .......... .......... .......... .......... 614 // intron part 116366 117865 (1500 n) not shown // //........ .......... .......... .......... .......... ........// GCTTTATGCA AAAGAACCTC TCTAGCTATC CTTTGGTAAT ATCCTGCATC ATACCCCCTG 117925 .......... .......... .......... .......... .......... .......... 614 TTCCGGTATG ACTTACTGAG TACAATGGGC AGTAC-TCAG TCTTG-CTTT ATT-TTCC-- 117980 | | | | | | | | | || ||| .......... .......... ......GTGT ACTTCGAGAT AGTCGCCGAG GTTCCTCCAG 648 CCAAAACCCT AGAGTTTGAG TATGCGTCAG ATGGTGGCTT TTCCGAGGAG TAGGCTTCGT 118040 | | | ||| | |||| | || ||| | ||||||| || ||||||||| |||||||||| CTGCAGAGCA AGAATATGAG TGTGTGTCCG ATGGTGGTTT CTCCGAGGAG TAGGCTTCGT 708 CCGTGCCATC GAGGATGCCT GTGGAGTGGT GTTCCCGCTA CAGTTAAAGT CAAGGCTTAG 118100 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| CCGTGCCATC GAGGATGCCT GTGGAGTGGT GTTCCCGCTG CAGTTCAAGT CAAGGCTTAG 768 TTCCGGTTAT CTTTTATTTT TCCGCTGCAT TTATGTAAGA CTTTTATAAT ATTTGTACGA 118160 ||| ||||| |||| |||| |||||||||| |||||||||| ||||||| || |||||| || CTCCTGTTAT CTTTCGTTTT TCCGCTGCAT TTATGTAAGA CTTTTATGAT GTTTGTAAGA 828 CGTGGATCTG TATGTCAACT TTGTCGTTTG TGTACCCCGG CCGGTCCTGG AAGGGGATTT 118220 |||||||||| |||||||| |||||||||| | |||||||| |||||||||| | |||||||| CGTGGATCTG AATGTCAACA TTGTCGTTTG TATACCCCGG CCGGTCCTGG ACGGGGATTT 888 TAATGCACAT TCTGCTTGGA ATTCTATTCG GG 118252 |||||||||| |||||||||| |||||||||| || TAATGCACAT TCTGCTTGGA ATTCTATTCG GG 920 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32974542|dbj|AK064524.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-G07, full insert sequence 1 GTTGTGATCC AACTATGTAT GTGTGTACCA ACTACTGATC CAGGGATTGG TACGGATAAA 61 CACAGAAGAT TTCCGATTTC CAAAATCGAG GGTCTGTAGC CGCTCGCCTC GCCAGTTGCA 121 GGATTGCTAG CTCGCGCGTA CGCGCCAGCA GAGAAGCTGG CGCGCACGCT AGCTGCGCCT 181 GGCTCTAGCG CTCTTTTTTT TTCTGATTTT CTTTATGATT TTTTTTGTTA CACGTTTGTT 241 CCATATCACG GAAAAAAAGT TTCCTTTTTT TTATTCTTCT TTTCTTTTCC AGAAACTACA 301 TAAACAAACT TTTAAGTAAG ATTTGAAATC TTTTCAACTT ATATTCAAAA ATTTTCAATT 361 CCAGATTTAA AAGTTTAAAC TTATATTTAA AATCTTTCAA TATAGATTTG AAAATTTCCA 421 AGTCAAGATT GAAATCTTCC AGCTAGGATT TGAAAACTTT TAAGTCAAGA TTGAAATCTT 481 TCAACTTAGA TTTGAAAACT TCCAAGTGAA GATTAAAAAC TTTCAACTCA GATTTGAAAA 541 CTTCCAAGTC CAAATTTGAA ACTTTAAACT TAGATTTGAA AACTTTCAGT TCGGATTTGA 601 AAACTTTTAA ATCAAGATTT AAAACTTTCT AAGTCAGATT TGAAAACTTT CAACTGAAGA 661 TTTGAAACAT TTAAGTCAAA TTTAAAAACT TTCAAGTCAA AATTCAAAAT ATTCAATTTA 721 AATTTAAAAA CTTTCATCTC AAAATTCAAA GCATTCAACT TAAATTTTAA AAACTTTCAA 781 CTCAAATTTA AAACTTTCAA CTGAAATTGG AGGTGAAAGA TTCAATTTAT AAAATATAGC 841 ACGGAAATAA ATCGCGCGAC CATGTAAAGA AAATAAGGGA GCGATTC Genomic Template: file=OSchr10, strand=-, from=141190, to=139705, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 140890 140005 ( 886 n); cDNA 1 887 ( 887 n); score: 0.996 MATCH OSchr10-v3- 32974542+ 0.996 886 0.999 C PGS_OSchr10-v3-_32974542+ (140890 140005) Alignment (genomic DNA sequence = upper lines): GTTGTGATCC AACTATGTAT GTGTGTACCA ACTACTGATC CAGGGATTGG TACGGATAAA 140831 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTGATCC AACTATGTAT GTGTGTACCA ACTACTGATC CAGGGATTGG TACGGATAAA 60 CACAGAAGAT TTCCGATTTC CAAAATCGAG GGTCTGTAGC CGCTCGCCTC GCCAGTTGCA 140771 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAGAAGAT TTCCGATTTC CAAAATCGAG GGTCTGTAGC CGCTCGCCTC GCCAGTTGCA 120 GGATTGCTAG CTCGCGCGTA CGCGCCAGCA GAGAAGCTGG CGCGCACGCT AGCTGCGCCT 140711 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTGCTAG CTCGCGCGTA CGCGCCAGCA GAGAAGCTGG CGCGCACGCT AGCTGCGCCT 180 GGCTCTAGCG CTCTTTTTTT TTCTGATTTT CTTTATGATT TTTTTTGTTA CACGTTTGTT 140651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTCTAGCG CTCTTTTTTT TTCTGATTTT CTTTATGATT TTTTTTGTTA CACGTTTGTT 240 CCATATCACG GAAAAAAAGT TTCC-TTTTT TTATTCTTCT TTTCTTTTCC AGAAACTACA 140592 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| CCATATCACG GAAAAAAAGT TTCCTTTTTT TTATTCTTCT TTTCTTTTCC AGAAACTACA 300 TAAACAAACT TTTAAGTAAG ATTTGAAATC TTTTCAACTT ATATTCAAAA ATTTTCAATT 140532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACAAACT TTTAAGTAAG ATTTGAAATC TTTTCAACTT ATATTCAAAA ATTTTCAATT 360 CCAGATTTAA AAGTTTAAAC TTATATTTAA AATCTTTCAA TATAGATTTG AAAATTTCCA 140472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGATTTAA AAGTTTAAAC TTATATTTAA AATCTTTCAA TATAGATTTG AAAATTTCCA 420 AGTCAAGATT GAAATCTTCC AGCTAGGATT TGAAAACTTT TAAGTCAAGA TTGAAATCTT 140412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCAAGATT GAAATCTTCC AGCTAGGATT TGAAAACTTT TAAGTCAAGA TTGAAATCTT 480 TCAACTTAGA TTTGAAAACT TCCAAGTGAA GATTAAAAAC TTTCAACTCA GATTTGAAAA 140352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTTAGA TTTGAAAACT TCCAAGTGAA GATTAAAAAC TTTCAACTCA GATTTGAAAA 540 CTTCCAAGTC CAAATTTGAA ACTTTAAACT TAGATTTGAA AACTTTCAGT TCGGATTTGA 140292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCAAGTC CAAATTTGAA ACTTTAAACT TAGATTTGAA AACTTTCAGT TCGGATTTGA 600 AAACTTTTAA ATCAAGATTT AAAACTTTCT AAGTCAGATT TGAAAACTTT CAACTGAAGA 140232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTTTTAA ATCAAGATTT AAAACTTTCT AAGTCAGATT TGAAAACTTT CAACTGAAGA 660 TTTGAAACAT TTAAGTCAAA TTTAAAAACT TTCAAGTCAA AATTCAAAAT ATTCAATTTA 140172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAACAT TTAAGTCAAA TTTAAAAACT TTCAAGTCAA AATTCAAAAT ATTCAATTTA 720 AATTTAAAAA CTTTCATCTC AAAATTCAAA GCATTCAACT TAAATTTTAA AAACTTTCAA 140112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTAAAAA CTTTCATCTC AAAATTCAAA GCATTCAACT TAAATTTTAA AAACTTTCAA 780 CTCAAATTTA AAACTTTCAA CTGAAATTGG AGGTGAAAGA TTCAATTTAT AAAATATAGC 140052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAATTTA AAACTTTCAA CTGAAATTGG AGGTGAAAGA TTCAATTTAT AAAATATAGC 840 ACGGAAATAA ATCGCGCGAC CACGTAAAGA AAATAAGGGA GCGATTC 140005 |||||||||| |||||||||| || ||||||| |||||||||| ||||||| ACGGAAATAA ATCGCGCGAC CATGTAAAGA AAATAAGGGA GCGATTC 887 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32976602|dbj|AK066584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074P05, full insert sequence 1 CTGCCGTCCT CTCCCTCGCC GACGCCGTCT CCCAGGTCGG TTCCGACCTC GCCGATTTCC 61 TCCGCTCTGA TTCCGATCAC GTCCCCCGAA CCCTCCTCCA GCTCTCCAAG CTCGCCGCCT 121 CCGACCCCAT CTCCTCCGCT GCCTCCTCCC TTTCCCACTC CCTCGCCTCC GGCCTCCTCC 181 GCGCCCTCTC CGACTCCACC TCCACCTCGA CCACGACCAC ACCCGCACAA ATCGGCCTCA 241 CCGATCGGAT CTTGGACCGC CTGCTCTCCC CCGCCGGCAC CGGCTTCGCC TCCGCCGTCG 301 TCGGCAGCTT CGCCAGGAAC CTCGTCTTGT CCTACCACGC CGCCGCCGCC CCTCGGCCCC 361 CCAGCGCCCA CCCGCTCCCG GATTGGCTCT GCAGCGACAG GGGCAAGGAC GCCGCGGCCG 421 ACCTTGTCCG GGTCTTCGTT AGCACCGCCG TCGCGGCCTA CCTCGACCGG ACCGCCTCCG 481 TGCCGCGTAC CTCTCACCAG CTGCTCGCGG CATTCACCGA CCCCAAGCAC GAGGCCAAGC 541 TCAAGGACCT GCTCGTCTCC GTCTGCAATG GCGCCGTGGA GACCTTGGTG AGGACAAGGA 601 GGCAGGTTGC GGTTGCTCCA CCTCCAACTC CAATTGTGGT GGTCAGTGAG GCGCAGAGTC 661 CTCATGGATG CGTCATGGAC ACGGTGTCCA GCACTCTTGC CGTGCCCAGC AACCGCAGGT 721 TTGTGCTGGA TATCACTGGC AGAGTCACCG CCGAGACCGT CCGCTCCTTG CTCGATTTCC 781 TGGCGCAGCG GGTCTCCGAT GGAGCCAGGA AGAGCATTGC CACCGCCCGC AACGAGGGGT 841 TCCTCGCCAT CAAGCACATC ACCTCCAAGT CCATGGCCAT CTTCACCATA TGCTTCGCCT 901 TGTGCATGCA CATTTCCATG GGAACAAGGT TCCTCTTGCC GCCATAGCTC ACTGCTATTG 961 GAATTCCAGG TGACAGCTTG TCCCCCATCT TCATTAGTTG CACACTAAAT TATTACTACT 1021 ATATCTGTAG ATTGCAAATT GATCCTATAC CACTAGTAGT TATTATTACA AGCTTGGCGC 1081 CTCATTGTCA TATTACCATG TCTTTGGGGT GTTGGCTGAA AGCATCAAGG TTCCATCAAC 1141 AACTAGACTG GAATTTTCAG ATGGTGGTTG TTTTGTTTGT GGCTTGATTG ATTGACACGA 1201 GGTATATGAT GGCTAAATTA AATCATACTA GCCGAATTGG CAATTTTAGT GTATGATAAT 1261 TTTGATACGG GTAGTGATTG ATGCTGTTTT ATGCTTGCCA ATTTTAGTGT AAAGTGGCCT 1321 AGTTTTTGTC AATAGCTTCT TGTTGCTGAT GCTCTTCAGC TGTCTTTCCA TGCATGTAAT 1381 CCATAGAGCT TGTCTGCTTT TTTTTTGTTT GGTATTCACT CTTTCTTCTG ACTTGTAACA 1441 AAGGGAACGG GAAGTTGTGA GATAAAAATA AAATGCCTTG TTTTGTG Genomic Template: file=OSchr10, strand=-, from=167661, to=165575, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 167361 165875 (1487 n); cDNA 1 1487 (1487 n); score: 0.999 MATCH OSchr10-v3- 32976602+ 0.999 1487 1.000 C PGS_OSchr10-v3-_32976602+ (167361 165875) Alignment (genomic DNA sequence = upper lines): CTGCCGTCCT CTCCCTCGCC GACGCCGTCT CCCAGGTCGG TTCCGACCTC GCCGATTTCC 167302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCCGTCCT CTCCCTCGCC GACGCCGTCT CCCAGGTCGG TTCCGACCTC GCCGATTTCC 60 TCCGCTCTGA TTCCGATCAC GTCCCCCGAA CCCTCCTCCA GCTCTCCAAG CTCGCCGCCT 167242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGCTCTGA TTCCGATCAC GTCCCCCGAA CCCTCCTCCA GCTCTCCAAG CTCGCCGCCT 120 CCGACCCCAT CTCCTCCGCT GCCTCCTCCC TTTCCCACTC CCTCGCCTCC GGCCTCCTCC 167182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGACCCCAT CTCCTCCGCT GCCTCCTCCC TTTCCCACTC CCTCGCCTCC GGCCTCCTCC 180 GCGCCCTCTC CGACTCCACC TCCACCTCGA CCACGACCAC ACCCGCACAA ATCGGCCTCA 167122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCCCTCTC CGACTCCACC TCCACCTCGA CCACGACCAC ACCCGCACAA ATCGGCCTCA 240 CCGATCGGAT CTTGGACCGC CTGCTCTCCC CCGCCGGCAC CGGCTTCGCC TCCGCCGTCG 167062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGATCGGAT CTTGGACCGC CTGCTCTCCC CCGCCGGCAC CGGCTTCGCC TCCGCCGTCG 300 TCGGCAGCTT CGCCAGGAAC CTCGTCTTGT CCTACCACGC CGCCGCCGCC CCTCGGCCCC 167002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGCAGCTT CGCCAGGAAC CTCGTCTTGT CCTACCACGC CGCCGCCGCC CCTCGGCCCC 360 CCAGCGCCCA CCCGCTCCCG GATTGGCTCT GCAGCGACAG GGGCAAGGAC GCCGCGGCCG 166942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCGCCCA CCCGCTCCCG GATTGGCTCT GCAGCGACAG GGGCAAGGAC GCCGCGGCCG 420 ACCTTGTCCG GGTCTTCGTT AGCACCGCCG TCGCGGCCTA CCTCGACCGG ACCGCCTCCG 166882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTGTCCG GGTCTTCGTT AGCACCGCCG TCGCGGCCTA CCTCGACCGG ACCGCCTCCG 480 TGCCGCGTAC CTCTCACCAG CTGCTCGCGG CATTCACCGA CCCCAAGCAC GAGGCCAAGC 166822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCGCGTAC CTCTCACCAG CTGCTCGCGG CATTCACCGA CCCCAAGCAC GAGGCCAAGC 540 TCAAGGACCT GCTCGTCTCC GTCTGCAATG GCGCCGTGGA GACCTTGGTG AGGACAAGGA 166762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGGACCT GCTCGTCTCC GTCTGCAATG GCGCCGTGGA GACCTTGGTG AGGACAAGGA 600 GGCAGGTTGC GGTTGCTCCA CCTCCAACTC CAATTGTGGT GGTCAGTGAG GCGCAGAGTC 166702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGGTTGC GGTTGCTCCA CCTCCAACTC CAATTGTGGT GGTCAGTGAG GCGCAGAGTC 660 CTCATGGATG CGTCATGGAC ACGGTGTCCA GCACTCTTGC CGTGCCCAGC AACCGCAGGT 166642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATGGATG CGTCATGGAC ACGGTGTCCA GCACTCTTGC CGTGCCCAGC AACCGCAGGT 720 TTGTGCTGGA TATCACTGGC AGAGTCACCG CCGAGACCGT CCGCTCCTTG CTCGATTTCC 166582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGCTGGA TATCACTGGC AGAGTCACCG CCGAGACCGT CCGCTCCTTG CTCGATTTCC 780 TGGCGCAGCG GGTCTCCGAT GGAGCCAGGA AGAGCATTGC CACCGCCCGC AACGAGGGGT 166522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCGCAGCG GGTCTCCGAT GGAGCCAGGA AGAGCATTGC CACCGCCCGC AACGAGGGGT 840 TCCTCGCCAT CAAGCACATC ACCTCCAAGT CCATGGCCAT CTTCACCATA TGCTTCGCCT 166462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCGCCAT CAAGCACATC ACCTCCAAGT CCATGGCCAT CTTCACCATA TGCTTCGCCT 900 TGTGCATGCA CATTTCCATG GGAACAAGGT TCCTCTTGCC GCCATAGCTC ACTGCTATTG 166402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCATGCA CATTTCCATG GGAACAAGGT TCCTCTTGCC GCCATAGCTC ACTGCTATTG 960 GAATTCCAGG TGACAGCTTG TCCCCCATCT TCATTAGTTG CACACTAAAT TATTACTACT 166342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTCCAGG TGACAGCTTG TCCCCCATCT TCATTAGTTG CACACTAAAT TATTACTACT 1020 ATATCTGTAG ATTGCAAATT GATCCTATAC CACTAGTAGT TATTATTACA AGCTTGGCGC 166282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTGTAG ATTGCAAATT GATCCTATAC CACTAGTAGT TATTATTACA AGCTTGGCGC 1080 CTCATTGTCA TATTACCATG TCTTTGGGGT GTTGGCTGAA AGCATCAAGG TTCCATCAAC 166222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATTGTCA TATTACCATG TCTTTGGGGT GTTGGCTGAA AGCATCAAGG TTCCATCAAC 1140 AACTAGACTG GAATTTTCAG ATGGTGGTTG TTTTGTTTGT GGCTTGATTG ATTGACACGA 166162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAGACTG GAATTTTCAG ATGGTGGTTG TTTTGTTTGT GGCTTGATTG ATTGACACGA 1200 GGTATATGAT GGCTAAATTA AATCATACTG GCCGAATTGG CAATTTTAGT GTATGATAAT 166102 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GGTATATGAT GGCTAAATTA AATCATACTA GCCGAATTGG CAATTTTAGT GTATGATAAT 1260 TTTGATACGG GTAGTGATTG ATGCTGTTTT ATGCTTGCCA ATTTTAGTGT AAAGTGGCCT 166042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATACGG GTAGTGATTG ATGCTGTTTT ATGCTTGCCA ATTTTAGTGT AAAGTGGCCT 1320 AGTTTTTGTC AATAGCTTCT TGTTGCTGAT GCTCTTCAGC TGTCTTTCCA TGCATGTAAT 165982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTTTGTC AATAGCTTCT TGTTGCTGAT GCTCTTCAGC TGTCTTTCCA TGCATGTAAT 1380 CCATAGAGCT TGTCTGCTTT TTTTTTGTTT GGTATTCACT CTTTCTTCTG ACTTGTAACA 165922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATAGAGCT TGTCTGCTTT TTTTTTGTTT GGTATTCACT CTTTCTTCTG ACTTGTAACA 1440 AAGGGAACGG GAAGTTGTGA GATAAAAATA AAATGCCTTG TTTTGTG 165875 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AAGGGAACGG GAAGTTGTGA GATAAAAATA AAATGCCTTG TTTTGTG 1487 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32986941|dbj|AK101732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061G11, full insert sequence 1 GGCGGGAGGA AGAAGGGAAT CTGATTGCTT CCTTCTTCCT TCTTCGATTC AGAATCACTT 61 TGTTTCTTCT TTCTTCTTCT ATCTATCTAT CTACCTGTGG AGACGAGAGG AGAGGAAATC 121 TATGGCGTCT CCTCCTTCGC CCTCCGCATC ACGCGCAGTC GCAGTCGAGA GATCACCGGG 181 GTTCGGCTTG GAGCCCTCCT CCTCCTCCTC CTCGTCGTCG TCGGCCCCCT CAAGGAATGA 241 GCTGCTGACT ATGGTGAAAA AACATTCCCA TTTGATTGGG TGGACAGTTG TTGATGCTGA 301 AGATGATGCA TCAGACGTGG GAATGGATGA TCGATTCTGG CATGAAATGC TTGATCTTTT 361 CTTCGTGCGT GGTAGGGTTT CAAAGAGGAG GGAAGAGGAT GACCTCGTCT TTTTTGTTAA 421 TAATAATATG AAAATGCATG GCCATGGGTT CAACGATAAC ATGGAAGATC CACCTCCTTT 481 TTTTGTGAGA AGATGGGCTC CTATGCTTGA AAAGATCAGC AATATAAATT CAGCTGGAGT 541 TGATTGGGAG CGTTCATTCT ATTTGAATTT AATTGCTCAC ACATCATACA CTGTTACAGT 601 TGCAATATGC AGTGTCAGGG ATCTTCGCAG CCGTGTAGAG AAAAGCAAAC CATTATCACC 661 AGTTTATAAG GTCACAAAAA CTGTGTATGC ATCCCCAAGC CGTGTAAATT TTCATCTTGA 721 TCGAAGAAAG GCTGTGGAAA CTGTACCTGC ATATCCCAAT ATTTGTTTCT CAGTTGATGA 781 CTTCGATGAT ACTTTTGATG CTGTTGTTTT GTCAGACCCC GAACATTGCT ATTGTGTGAT 841 TCTCAATGCA CATGATGGGG CAGCTTTTCC TGAAGACACT GAATCGAAGA ATGCCAGCTC 901 AAATCTACTA AACACTGGGA GCAACCAAGA AAAACCACCA AAGAGAACAC TCTTCTCAGG 961 CTACGTTAGC TACCAAAATG TTCGAGAAGC CTACAATGCT GGCAGATCAC AATTTGGGAG 1021 CTTACTCTCA CTCGGGCATG ACCAAACTAA ACTTGATAAA CTTTATATGA GGGGCCCTGA 1081 AGGGCGTGGG GAAGTTGAAG TAGCTGTTTC TGGAATTGCA GATCAGAGCC ATGAGAGATC 1141 AAAGAAAGAT CCAGGAGATA GCTTTCGAGT CTTTGTTCAT AGGGCAGCTT CTGCTGCATC 1201 AAAGCTGGCA AAGCATGCCT ACGAGGCTGC ATCTACCAAC AAACGATTTG ATCATGAGCT 1261 TCTGCCTCTG AAATGTTGCT TGATGTCGGT ATCTCTTCCT TGGGACTACA TTGCACATGA 1321 CCTGCTACAC AAGGAAACCC CTCCGCTGGA CCTATGAGAG ACTGCGAATT CCCATTGTGC 1381 ACCAGAAAGA ATGATATATG TGCATGATTG TGGGAAAGTT TGTGTCCCTT GGGCTCGATA 1441 TAGTGTAAGA AAACAGTGAG CAGAGAAGCA GTGCTGCGAT GTACATGTGT ACTTTAAACA 1501 GACTAAAACT TGTAGAATTT TCATGTGTGT TTGTACAATG TTGAAAGTAG GCGATGAAAT 1561 AATGTAAATA TATATTTTTT TGGTTGTCAT GAGGAAGACT CTTCACTGTT GCC Genomic Template: file=OSchr10, strand=+, from=206493, to=213903, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 206792 207031 ( 240 n); cDNA 1 234 ( 234 n); score: 0.963 Intron 1 207032 207746 ( 715 n); Pd: 0.000 (s: 0.94), Pa: 0.999 (s: 1.00) Exon 2 207747 207942 ( 196 n); cDNA 235 430 ( 196 n); score: 1.000 Intron 2 207943 208026 ( 84 n); Pd: 0.999 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 208027 208101 ( 75 n); cDNA 431 505 ( 75 n); score: 1.000 Intron 3 208102 208530 ( 429 n); Pd: 0.812 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 4 208531 208637 ( 107 n); cDNA 506 612 ( 107 n); score: 1.000 Intron 4 208638 209190 ( 553 n); Pd: 0.912 (s: 1.00), Pa: 0.955 (s: 0.96) Exon 5 209191 209248 ( 58 n); cDNA 613 670 ( 58 n); score: 0.966 Intron 5 209249 210180 ( 932 n); Pd: 0.926 (s: 0.96), Pa: 0.972 (s: 1.00) Exon 6 210181 210240 ( 60 n); cDNA 671 730 ( 60 n); score: 1.000 Intron 6 210241 210317 ( 77 n); Pd: 0.992 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 7 210318 210392 ( 75 n); cDNA 731 805 ( 75 n); score: 1.000 Intron 7 210393 210501 ( 109 n); Pd: 0.989 (s: 1.00), Pa: 0.899 (s: 1.00) Exon 8 210502 210639 ( 138 n); cDNA 806 943 ( 138 n); score: 1.000 Intron 8 210640 211763 (1124 n); Pd: 0.808 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 9 211764 211818 ( 55 n); cDNA 944 998 ( 55 n); score: 1.000 Intron 9 211819 212131 ( 313 n); Pd: 0.987 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 10 212132 212254 ( 123 n); cDNA 999 1121 ( 123 n); score: 0.992 Intron 10 212255 212642 ( 388 n); Pd: 0.970 (s: 0.98), Pa: 0.986 (s: 1.00) Exon 11 212643 212854 ( 212 n); cDNA 1122 1333 ( 212 n); score: 1.000 Intron 11 212855 213324 ( 470 n); Pd: 0.985 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 12 213325 213604 ( 280 n); cDNA 1334 1613 ( 280 n); score: 0.996 MATCH OSchr10-v3+ 32986941+ 0.992 1619 1.004 C PGS_OSchr10-v3+_32986941+ (206792 207031,207747 207942,208027 208101,208531 208637,209191 209248,210181 210240,210318 210392,210502 210639,211764 211818,212132 212254,212643 212854,213325 213604) Alignment (genomic DNA sequence = upper lines): TGCGGGAGGA AGAAGGGAAT CTGATTGCTT CCTTCTTCCT TCTTCGATTC AGAATCAATT 206851 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || GGCGGGAGGA AGAAGGGAAT CTGATTGCTT CCTTCTTCCT TCTTCGATTC AGAATCACTT 60 TGTTTCTTCT TTCTTCTTCT ATCTATCTAT CTACCTGTGG AGACGAGAGG AGAGGAAATC 206911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTCTTCT TTCTTCTTCT ATCTATCTAT CTACCTGTGG AGACGAGAGG AGAGGAAATC 120 TATGGCGTCT CCTCCTCCTT CGCCCTCCGC ATCACGCGCA GTCGCAGTCG AGAGATCACC 206971 ||||||| | ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGCG--T -CTCCTCCTT CGCCCTCCGC ATCACGCGCA GTCGCAGTCG AGAGATCACC 177 GAGGTTCGGC TTGGAGCCCT CCTCCTCCTC CTCCTCCTCG TCGTCGTCGG CCCCCTCAAG 207031 | |||||||| |||||| | |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTCGGC TTGGAG--C- CCTCCTCCTC CTCCTCCTCG TCGTCGTCGG CCCCCTCAAG 234 GTAATCTCTA TCCCCATCCT AATTTTGGAC CCCAACCCTC GCCCCCGCCC CCGCCTGCCA 207091 .......... .......... .......... .......... .......... .......... 234 // intron part 207092 207631 (540 n) not shown // //........ .......... .......... .......... .......... ........// CACCCAACAA TTCTGGTCGA TTTTGTTTTG AGCCTATCTC CATTTTCTGT AAAAGCATAT 207691 .......... .......... .......... .......... .......... .......... 234 GTCCTTATAT CCTTTTAAGC ACTTCTCAAC CTTTTGTTTC TTTTTGTCTT TTCAGGAATG 207751 ||||| .......... .......... .......... .......... .......... .....GAATG 239 AGCTGCTGAC TATGGTGAAA AAACATTCCC ATTTGATTGG GTGGACAGTT GTTGATGCTG 207811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCTGAC TATGGTGAAA AAACATTCCC ATTTGATTGG GTGGACAGTT GTTGATGCTG 299 AAGATGATGC ATCAGACGTG GGAATGGATG ATCGATTCTG GCATGAAATG CTTGATCTTT 207871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGATGC ATCAGACGTG GGAATGGATG ATCGATTCTG GCATGAAATG CTTGATCTTT 359 TCTTCGTGCG TGGTAGGGTT TCAAAGAGGA GGGAAGAGGA TGACCTCGTC TTTTTTGTTA 207931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCGTGCG TGGTAGGGTT TCAAAGAGGA GGGAAGAGGA TGACCTCGTC TTTTTTGTTA 419 ATAATAATAT GGTAAACTTC CAATCCTTCT CAGTTCCCCT TATTTTAGCT TACAGTGTTA 207991 |||||||||| | ATAATAATAT G......... .......... .......... .......... .......... 430 TCTTGTATGC TAACTGAGGC TCAATGCTGG TGCAGAAAAT GCATGGCCAT GGGTTCAACG 208051 ||||| |||||||||| |||||||||| .......... .......... .......... .....AAAAT GCATGGCCAT GGGTTCAACG 455 ATAACATGGA AGATCCACCT CCTTTTTTTG TGAGAAGATG GGCTCCTATG GTAAATTAAC 208111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACATGGA AGATCCACCT CCTTTTTTTG TGAGAAGATG GGCTCCTATG .......... 505 CAAGACTATC TTCATCAATT TCGATCATAT CAATAAATGC ATGCTTCCCT TTTTGGTAGT 208171 .......... .......... .......... .......... .......... .......... 505 // intron part 208172 208411 (240 n) not shown // //........ .......... .......... .......... .......... ........// AATTGACTTC CATAAGCTAG TGTTTGGTTC ATAACATACT TTCTACAGAA AAGAAGTCTC 208471 .......... .......... .......... .......... .......... .......... 505 TGATAATACA TACTAACTCT TGGTTTTTTA TTTGTTCTCC TTTGTTTTAT GTGGAGCAGC 208531 | .......... .......... .......... .......... .......... .........C 506 TTGAAAAGAT CAGCAATATA AATTCAGCTG GAGTTGATTG GGAGCGTTCA TTCTATTTGA 208591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAAAGAT CAGCAATATA AATTCAGCTG GAGTTGATTG GGAGCGTTCA TTCTATTTGA 566 ATTTAATTGC TCACACATCA TACACTGTTA CAGTTGCAAT ATGCAGGTAC GTTTCTGCCA 208651 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATTTAATTGC TCACACATCA TACACTGTTA CAGTTGCAAT ATGCAG.... .......... 612 GTTCTGTCAA GATATTGCAA GTTTTTATCT AGTATTTATA CTGAATGATT GGCATGCTGT 208711 .......... .......... .......... .......... .......... .......... 612 // intron part 208712 209071 (360 n) not shown // //........ .......... .......... .......... .......... ........// TTGGGTTCCA ACCAATAACT ATTGTTGTGC AACCTGAGCC TGAGAGCTCT TGTTGTATCA 209131 .......... .......... .......... .......... .......... .......... 612 TCTTTACCTC CTTAGTTGAT ATATCTGGCA AAGTTAGTTT CTTACAATCT GCTCTACAGT 209191 | .......... .......... .......... .......... .......... .........T 613 GTCAGGGATC TTTGCAGCCG TGCAGAGAAA AGCAAACCAT TATCACCAGT TTATAAGGTA 209251 |||||||||| || ||||||| || ||||||| |||||||||| |||||||||| ||||||| GTCAGGGATC TTCGCAGCCG TGTAGAGAAA AGCAAACCAT TATCACCAGT TTATAAG... 670 CTGTACAAGT AAGCATTTCA CGGCACTCCA TCATTTACCA GTGAATCTTA TTACATAGGT 209311 .......... .......... .......... .......... .......... .......... 670 // intron part 209312 210091 (780 n) not shown // //........ .......... .......... .......... .......... ........// TTGTTGCAAT ACTAGTTACC CTAGCTAAAG TTTAACATGT TTTCGGTATT AAGTAATTAT 210151 .......... .......... .......... .......... .......... .......... 670 GTCTTAAACT CATTGTCTTA TTAAAACAGG TCACAAAAAC TGTGTATGCA TCCCCAAGCC 210211 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TCACAAAAAC TGTGTATGCA TCCCCAAGCC 701 GTGTAAATTT TCATCTTGAT CGAAGAAAGG TACTTTTTCC TGGCATTTTC AGTCTCTCTT 210271 |||||||||| |||||||||| ||||||||| GTGTAAATTT TCATCTTGAT CGAAGAAAG. .......... .......... .......... 730 TTGAAAGAGA TGATGTTTCA GTAAAAATTC CTGTATCTTT GGACAGGCTG TGGAAACTGT 210331 |||| |||||||||| .......... .......... .......... .......... ......GCTG TGGAAACTGT 744 ACCTGCATAT CCCAATATTT GTTTCTCAGT TGATGACTTC GATGATACTT TTGATGCTGT 210391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGCATAT CCCAATATTT GTTTCTCAGT TGATGACTTC GATGATACTT TTGATGCTGT 804 TGTAAGTTCC CATTTCTCAG TATTCTAGCA TATTGTTCAT ATGGATGTAT CTATGATATT 210451 | T......... .......... .......... .......... .......... .......... 805 GCATCGCTTT TGTCATTATA GAATGAAAGT GACCATCTAA ATTTGAGCAG GTTTTGTCAG 210511 |||||||||| .......... .......... .......... .......... .......... GTTTTGTCAG 815 ACCCCGAACA TTGCTATTGT GTGATTCTCA ATGCACATGA TGGGGCAGCT TTTCCTGAAG 210571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCCGAACA TTGCTATTGT GTGATTCTCA ATGCACATGA TGGGGCAGCT TTTCCTGAAG 875 ACACTGAATC GAAGAATGCC AGCTCAAATC TACTAAACAC TGGGAGCAAC CAAGAAAAAC 210631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTGAATC GAAGAATGCC AGCTCAAATC TACTAAACAC TGGGAGCAAC CAAGAAAAAC 935 CACCAAAGGT CCTCTGCCCT CAAATCTACC AAAACTCTCT CTCTCTCAGA ATTCAGCACT 210691 |||||||| CACCAAAG.. .......... .......... .......... .......... .......... 943 TAGTAAATTC TCCGTGTGTC TCAAACTATA GGAGCATTCT GATTTTGTCC CAAATTATTT 210751 .......... .......... .......... .......... .......... .......... 943 // intron part 210752 211651 (900 n) not shown // //........ .......... .......... .......... .......... ........// CTTGCTTAAA ACATAGTTAC ACTTTAGCAG ATATCCGCTT CTGTAACACA ACTGTATGAA 211711 .......... .......... .......... .......... .......... .......... 943 GTATATCATA GTTCATTTCT CACCTACATT GCGCTTACTG TGATTATTGC AGAGAACACT 211771 |||||||| .......... .......... .......... .......... .......... ..AGAACACT 951 CTTCTCAGGC TACGTTAGCT ACCAAAATGT TCGAGAAGCC TACAATGGTG AGTCCATCCA 211831 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CTTCTCAGGC TACGTTAGCT ACCAAAATGT TCGAGAAGCC TACAATG... .......... 998 TCTATTTATC TCCAAGGAAA CTATTGTTCA GATGGTCTTA TAAAGTACTT ATGTCCTTTC 211891 .......... .......... .......... .......... .......... .......... 998 // intron part 211892 212071 (180 n) not shown // //........ .......... .......... .......... .......... ........// TAGGTACCTA CCATTTCATT CCTTCTAGGT TTACATTTCC TGATATGTAC TCTGTTATAG 212131 .......... .......... .......... .......... .......... .......... 998 CTGGCAGATC ACAATTTGGG AGCTTACTCT CACTCGGGCA TGACCAAACT AAACTTGATA 212191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCAGATC ACAATTTGGG AGCTTACTCT CACTCGGGCA TGACCAAACT AAACTTGATA 1058 AACTTTATAT GAGGGGCCCT GAAGGACGTG GGGAAGTTGA AGTAGCTGTT TCTGGAATTG 212251 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AACTTTATAT GAGGGGCCCT GAAGGGCGTG GGGAAGTTGA AGTAGCTGTT TCTGGAATTG 1118 CAGGTCAGTT ATGTTTAGCC TAAGTAGCGA TTTACTGCGT GGGTTGACTC TGGAATATGT 212311 ||| CAG....... .......... .......... .......... .......... .......... 1121 TTCACAAGCT TCAAGTTATC TCGCTGTTAC ATGCATTTAC TGTAATGAGT AGGATTTGGG 212371 .......... .......... .......... .......... .......... .......... 1121 // intron part 212372 212551 (180 n) not shown // //........ .......... .......... .......... .......... ........// ATGCACATTC ATGTCTTGGA TTACCGTAGC TGTGATGATG CAAGTTGTTG ATCCGTCAAA 212611 .......... .......... .......... .......... .......... .......... 1121 CTCTGACATG GAAATGATTG TCTTTTATTA GATCAGAGCC ATGAGAGATC AAAGAAAGAT 212671 ||||||||| |||||||||| |||||||||| .......... .......... .......... .ATCAGAGCC ATGAGAGATC AAAGAAAGAT 1150 CCAGGAGATA GCTTTCGAGT CTTTGTTCAT AGGGCAGCTT CTGCTGCATC AAAGCTGGCA 212731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGAGATA GCTTTCGAGT CTTTGTTCAT AGGGCAGCTT CTGCTGCATC AAAGCTGGCA 1210 AAGCATGCCT ACGAGGCTGC ATCTACCAAC AAACGATTTG ATCATGAGCT TCTGCCTCTG 212791 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCATGCCT ACGAGGCTGC ATCTACCAAC AAACGATTTG ATCATGAGCT TCTGCCTCTG 1270 AAATGTTGCT TGATGTCGGT ATCTCTTCCT TGGGACTACA TTGCACATGA CCTGCTACAC 212851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGTTGCT TGATGTCGGT ATCTCTTCCT TGGGACTACA TTGCACATGA CCTGCTACAC 1330 AAGGTGAAAA CCATCACTAC TTGCAAATGA TATGATTGTT TTGATGTCTA AAATTATTTT 212911 ||| AAG....... .......... .......... .......... .......... .......... 1333 TTTGAACTGA AATGTCTAAA ATTGTTGATA ACTATTTTCA TTTTCCTGCT TATTTTTTAG 212971 .......... .......... .......... .......... .......... .......... 1333 // intron part 212972 213211 (240 n) not shown // //........ .......... .......... .......... .......... ........// ATTGGCTGAA TAATAAGTGG GCTAGTTGCT TCTCAATTTT GAATGCAATC CACTTGACAG 213271 .......... .......... .......... .......... .......... .......... 1333 AATAGTTCAA GTTGAGTATA TCTAGCTTAC AATATGATCA CGCTATGTAA CAGGAAACCC 213331 ||||||| .......... .......... .......... .......... .......... ...GAAACCC 1340 CTCCGCTGGA CCTATGAGAG ACTGCGAATT CCCATTGTGC ACCAGAAAGA ATGATATATG 213391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGCTGGA CCTATGAGAG ACTGCGAATT CCCATTGTGC ACCAGAAAGA ATGATATATG 1400 TGCATGATTG TGGGAAAGTT TGTGTCCCTT GGGCTCGATA TAGTGTAAGA AAACAGTGAG 213451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATGATTG TGGGAAAGTT TGTGTCCCTT GGGCTCGATA TAGTGTAAGA AAACAGTGAG 1460 CAGAGAAGCA GTGCTGCGAT GTACATGTGT ACTTTAAACA GACTAAAACT TGTAGAATTT 213511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGAAGCA GTGCTGCGAT GTACATGTGT ACTTTAAACA GACTAAAACT TGTAGAATTT 1520 TCATGTGTGT TTGTACAATG TTGAAAGTAG GCGATGAAAT AATGTAAATA TATATTTTTT 213571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGTGTGT TTGTACAATG TTGAAAGTAG GCGATGAAAT AATGTAAATA TATATTTTTT 1580 TGGTTGTCAT GAGGAAGACT CTTCACTGTT GCT 213604 |||||||||| |||||||||| |||||||||| || TGGTTGTCAT GAGGAAGACT CTTCACTGTT GCC 1613 ******************************************************************************** EST Sequence: file=LIBc9, strand=-, description=gi|32970194|dbj|AK060176.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A02, full insert sequence 1 AATCTCTGAA GAATTAAACA AATCAATATA CATTGATATA TAATATTTCT GAAACAAATC 61 AATATAATAC ATGGATCACG TACAGAGTAC AGTATATATA TGTGTGTGAG CTAGCTAGCT 121 AGCTAGGTGT CATGTCGTCG TCATCTAACT ACAACACTCT TAACTCCCCT GACAATAAAA 181 TTCATCACCA GTAAGTGACC ATCTATAGCT AGATGCAAGC AAAACCAACA ACTTGAATTA 241 AAATTTTGTT TGATTTCTGG ATCGATCCTA GATGCGGCCG GCAGTGCTCA GTCCATCCTC 301 CTCACACATT AATTAACTTG TGAAAAAATG AAGCTAACTA ATTAAAGCAG AGGGGGTGAA 361 CATATGCATG AGAGAGCCAG CTGATCGATG AGCTAACTAG CTATAGCCAT ATATATTTAC 421 TACTAGATGC AAGCATGCAT GCAAGAATTA ATATATGTAC TACTATAAAC TATATATATG 481 TACACTACAC ACTGATATGA TGATTAATTA ATTAATCATG CTAGCATGCA TATGCAGGGA 541 GAGGATGATG ATCGAGATTA ATTTAGCTAG CAGGCGGCGG ACTTGGCGAA AGGGCTGAAC 601 AAGTGCGGGG CGGTGGGCTT GTTGGTGCGG TCGGCGGCGG CGGAGTGGGT CAGAGCCCTG 661 AGCTGCTGGA GCTCACGATG GAGGCGTCGG TTCTCCTCCG TCAGCGTCTC GCAGCAGCGC 721 TTCAGAAGCT CGCAATCCAC CTCCGTCTGC TTCAGCTTCG TCCTGCACTT GACCGATCGA 781 GCTTCTCTAT ATTAATTATC ATGCATATTC TTCTTCAACT ACTACTACTC CATGTGTAAT 841 ATGTCTGTCT GTCTTGTATA TATATGCATG CTTGCAAACG GGATGCCTAG GTTATACTAC 901 CTCCTATATA AATTACATTA TATTAATTAA TATATTAGTC AATAATTAGA TA Genomic Template: file=OSchr10, strand=+, from=263435, to=265100, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 263735 264376 ( 642 n); cDNA 1 642 ( 642 n); score: 1.000 Intron 1 264377 264490 ( 114 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 264491 264800 ( 310 n); cDNA 643 952 ( 310 n); score: 1.000 MATCH OSchr10-v3+ 32970194- 1.000 952 1.000 C PGS_OSchr10-v3+_32970194- (263735 264376,264491 264800) Alignment (genomic DNA sequence = upper lines): AATCTCTGAA GAATTAAACA AATCAATATA CATTGATATA TAATATTTCT GAAACAAATC 263794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTCTGAA GAATTAAACA AATCAATATA CATTGATATA TAATATTTCT GAAACAAATC 60 AATATAATAC ATGGATCACG TACAGAGTAC AGTATATATA TGTGTGTGAG CTAGCTAGCT 263854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATAATAC ATGGATCACG TACAGAGTAC AGTATATATA TGTGTGTGAG CTAGCTAGCT 120 AGCTAGGTGT CATGTCGTCG TCATCTAACT ACAACACTCT TAACTCCCCT GACAATAAAA 263914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAGGTGT CATGTCGTCG TCATCTAACT ACAACACTCT TAACTCCCCT GACAATAAAA 180 TTCATCACCA GTAAGTGACC ATCTATAGCT AGATGCAAGC AAAACCAACA ACTTGAATTA 263974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATCACCA GTAAGTGACC ATCTATAGCT AGATGCAAGC AAAACCAACA ACTTGAATTA 240 AAATTTTGTT TGATTTCTGG ATCGATCCTA GATGCGGCCG GCAGTGCTCA GTCCATCCTC 264034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTTTGTT TGATTTCTGG ATCGATCCTA GATGCGGCCG GCAGTGCTCA GTCCATCCTC 300 CTCACACATT AATTAACTTG TGAAAAAATG AAGCTAACTA ATTAAAGCAG AGGGGGTGAA 264094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCACACATT AATTAACTTG TGAAAAAATG AAGCTAACTA ATTAAAGCAG AGGGGGTGAA 360 CATATGCATG AGAGAGCCAG CTGATCGATG AGCTAACTAG CTATAGCCAT ATATATTTAC 264154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATGCATG AGAGAGCCAG CTGATCGATG AGCTAACTAG CTATAGCCAT ATATATTTAC 420 TACTAGATGC AAGCATGCAT GCAAGAATTA ATATATGTAC TACTATAAAC TATATATATG 264214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTAGATGC AAGCATGCAT GCAAGAATTA ATATATGTAC TACTATAAAC TATATATATG 480 TACACTACAC ACTGATATGA TGATTAATTA ATTAATCATG CTAGCATGCA TATGCAGGGA 264274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACACTACAC ACTGATATGA TGATTAATTA ATTAATCATG CTAGCATGCA TATGCAGGGA 540 GAGGATGATG ATCGAGATTA ATTTAGCTAG CAGGCGGCGG ACTTGGCGAA AGGGCTGAAC 264334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGATGATG ATCGAGATTA ATTTAGCTAG CAGGCGGCGG ACTTGGCGAA AGGGCTGAAC 600 AAGTGCGGGG CGGTGGGCTT GTTGGTGCGG TCGGCGGCGG CGGTGGGGGA AGCTCCGGCG 264394 |||||||||| |||||||||| |||||||||| |||||||||| || AAGTGCGGGG CGGTGGGCTT GTTGGTGCGG TCGGCGGCGG CG........ .......... 642 GCGGCGGCGG TGGCGAGGCG CTCGCAGGAG GGGCAGATGG AGAGCGTGGC GGCGGGGACG 264454 .......... .......... .......... .......... .......... .......... 642 GGGAGGGTGG TGGCCATGAA GAAGCCGGCG GCGGTGGAGT GGGTCAGAGC CCTGAGCTGC 264514 |||| |||||||||| |||||||||| .......... .......... .......... ......GAGT GGGTCAGAGC CCTGAGCTGC 666 TGGAGCTCAC GATGGAGGCG TCGGTTCTCC TCCGTCAGCG TCTCGCAGCA GCGCTTCAGA 264574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGCTCAC GATGGAGGCG TCGGTTCTCC TCCGTCAGCG TCTCGCAGCA GCGCTTCAGA 726 AGCTCGCAAT CCACCTCCGT CTGCTTCAGC TTCGTCCTGC ACTTGACCGA TCGAGCTTCT 264634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCGCAAT CCACCTCCGT CTGCTTCAGC TTCGTCCTGC ACTTGACCGA TCGAGCTTCT 786 CTATATTAAT TATCATGCAT ATTCTTCTTC AACTACTACT ACTCCATGTG TAATATGTCT 264694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATATTAAT TATCATGCAT ATTCTTCTTC AACTACTACT ACTCCATGTG TAATATGTCT 846 GTCTGTCTTG TATATATATG CATGCTTGCA AACGGGATGC CTAGGTTATA CTACCTCCTA 264754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTGTCTTG TATATATATG CATGCTTGCA AACGGGATGC CTAGGTTATA CTACCTCCTA 906 TATAAATTAC ATTATATTAA TTAATATATT AGTCAATAAT TAGATA 264800 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TATAAATTAC ATTATATTAA TTAATATATT AGTCAATAAT TAGATA 952 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32984777|dbj|AK099568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034N05, full insert sequence 1 CCTCCCCCTT CTCCCTCTTC TCTTCTTCCT CATCTCACAT CGTCTCTATA GCTACCTACC 61 TTCATCTCTC TCTAGAGCTA GAGCTAGCAC ACAAGAGAGA GGGAGAGAGA GAGAGAGAGA 121 GCGCTTGGTT GTTGGCGTGG TGGATGGCGC AAGATGATGA GGACGTGGGT CTAGCTCTGG 181 GCCTCTCCCT GGGCTCCGGC GGCCACAGGC GGCAGAGAGA AAGTAGAGAC GAAGCGCCGT 241 CGTCGGCGGC GGCGTCCCTG CTGACGCTGA GGCTCCCGGC AGAGAGCGGG GGGCAGCCGC 301 AGGTGGTGGT GAAGAGGGAG GTGGTGCGGG CGGAAGAGGA GGAGTACGAA TACGAGTACG 361 AGAGGGCGCT CTACTCGTCG TCGTCGCCGC CTGCTAGCTA AATTAATCTC GATCATCATC 421 CTCTCCCTGC ATATGCATGC TAGCATGATT AATTAATTAA TCATCATATC AGTGTGTAGT 481 GTACATATAT ATAGTTTATA GTAGTACATA TATTAATTCT TGCATGCGTG CTTGCATCTA 541 GTAGTAAATA TATATGGCTA TAGCTAGTTA GCTCATCGAT CAGCTGGCTC TCTCATGCAT 601 ATGTTCACCC CCTCTGCTTT AATTAGTTAG CTTCATTTTT TCACAAGTTA ATTAATGTGT 661 GAGGAGGATG GACTGAGCAC TGCCGGCCGC ATCTAGGATC GATCCAGAAA TCAAACAAAA 721 TTTTAATTCA AGTTGTTGGT TTTGCTTGCA TCTAGCTATA GATGGTCACT TACTGGTGAT 781 GAATTTTATT GTCAGGGGAG TTAAGAGTGT TGTAGTTAGA TGACGACGAC ATGACACCTA 841 GCTAGCTAGC TAGCTCACAC ACATATATAT ACTGTACTCT GTACGTGATC CATGTATTAT 901 ATTGATTTGT TTCAGAAATA TTATATATCA ATGTATATTG ATTTGTTT Genomic Template: file=OSchr10, strand=-, from=266278, to=263450, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 265978 265596 ( 383 n); cDNA 1 383 ( 383 n); score: 1.000 Intron 1 265595 264316 (1280 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0.98) Exon 2 264315 263750 ( 566 n); cDNA 384 948 ( 565 n); score: 0.996 MATCH OSchr10-v3- 32984777+ 0.998 949 1.001 C PGS_OSchr10-v3-_32984777+ (265978 265596,264315 263750) Alignment (genomic DNA sequence = upper lines): CCTCCCCCTT CTCCCTCTTC TCTTCTTCCT CATCTCACAT CGTCTCTATA GCTACCTACC 265919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCCCCTT CTCCCTCTTC TCTTCTTCCT CATCTCACAT CGTCTCTATA GCTACCTACC 60 TTCATCTCTC TCTAGAGCTA GAGCTAGCAC ACAAGAGAGA GGGAGAGAGA GAGAGAGAGA 265859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATCTCTC TCTAGAGCTA GAGCTAGCAC ACAAGAGAGA GGGAGAGAGA GAGAGAGAGA 120 GCGCTTGGTT GTTGGCGTGG TGGATGGCGC AAGATGATGA GGACGTGGGT CTAGCTCTGG 265799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCTTGGTT GTTGGCGTGG TGGATGGCGC AAGATGATGA GGACGTGGGT CTAGCTCTGG 180 GCCTCTCCCT GGGCTCCGGC GGCCACAGGC GGCAGAGAGA AAGTAGAGAC GAAGCGCCGT 265739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTCTCCCT GGGCTCCGGC GGCCACAGGC GGCAGAGAGA AAGTAGAGAC GAAGCGCCGT 240 CGTCGGCGGC GGCGTCCCTG CTGACGCTGA GGCTCCCGGC AGAGAGCGGG GGGCAGCCGC 265679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGGCGGC GGCGTCCCTG CTGACGCTGA GGCTCCCGGC AGAGAGCGGG GGGCAGCCGC 300 AGGTGGTGGT GAAGAGGGAG GTGGTGCGGG CGGAAGAGGA GGAGTACGAA TACGAGTACG 265619 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGGTGGT GAAGAGGGAG GTGGTGCGGG CGGAAGAGGA GGAGTACGAA TACGAGTACG 360 AGAGGGCGCT CTACTCGTCG TCGGCTGCGG CGGCGGACGA CGACGAGGGC TGCAACAGCC 265559 |||||||||| |||||||||| ||| AGAGGGCGCT CTACTCGTCG TCG....... .......... .......... .......... 383 GGAAGAAGCT GAGGCTGAGC AAGGAGCAGT CGGCTCTGCT GGAGGATCGC TTCAAGGAGC 265499 .......... .......... .......... .......... .......... .......... 383 // intron part 265498 264419 (1080 n) not shown // //........ .......... .......... .......... .......... ........// CGAGCGCCTC GCCACCGCCG CCGCCGCCGG AGCTTCCCCC ACCGCCGCCG CCGACCGCAC 264359 .......... .......... .......... .......... .......... .......... 383 CAACAAGCCC ACCGCCCCGC ACTTGTTCAG CCCTTTCGCC AAGTCCGCCG CCTGCTAGCT 264299 | ||||| |||||||||| .......... .......... .......... .......... ...T-CGCCG CCTGCTAGCT 399 AAATTAATCT CGATCATCAT CCTCTCCCTG CATATGCATG CTAGCATGAT TAATTAATTA 264239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTAATCT CGATCATCAT CCTCTCCCTG CATATGCATG CTAGCATGAT TAATTAATTA 459 ATCATCATAT CAGTGTGTAG TGTACATATA TATAGTTTAT AGTAGTACAT ATATTAATTC 264179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCATAT CAGTGTGTAG TGTACATATA TATAGTTTAT AGTAGTACAT ATATTAATTC 519 TTGCATGCAT GCTTGCATCT AGTAGTAAAT ATATATGGCT ATAGCTAGTT AGCTCATCGA 264119 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCATGCGT GCTTGCATCT AGTAGTAAAT ATATATGGCT ATAGCTAGTT AGCTCATCGA 579 TCAGCTGGCT CTCTCATGCA TATGTTCACC CCCTCTGCTT TAATTAGTTA GCTTCATTTT 264059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTGGCT CTCTCATGCA TATGTTCACC CCCTCTGCTT TAATTAGTTA GCTTCATTTT 639 TTCACAAGTT AATTAATGTG TGAGGAGGAT GGACTGAGCA CTGCCGGCCG CATCTAGGAT 263999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACAAGTT AATTAATGTG TGAGGAGGAT GGACTGAGCA CTGCCGGCCG CATCTAGGAT 699 CGATCCAGAA ATCAAACAAA ATTTTAATTC AAGTTGTTGG TTTTGCTTGC ATCTAGCTAT 263939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCCAGAA ATCAAACAAA ATTTTAATTC AAGTTGTTGG TTTTGCTTGC ATCTAGCTAT 759 AGATGGTCAC TTACTGGTGA TGAATTTTAT TGTCAGGGGA GTTAAGAGTG TTGTAGTTAG 263879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGTCAC TTACTGGTGA TGAATTTTAT TGTCAGGGGA GTTAAGAGTG TTGTAGTTAG 819 ATGACGACGA CATGACACCT AGCTAGCTAG CTAGCTCACA CACATATATA TACTGTACTC 263819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGACGACGA CATGACACCT AGCTAGCTAG CTAGCTCACA CACATATATA TACTGTACTC 879 TGTACGTGAT CCATGTATTA TATTGATTTG TTTCAGAAAT ATTATATATC AATGTATATT 263759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACGTGAT CCATGTATTA TATTGATTTG TTTCAGAAAT ATTATATATC AATGTATATT 939 GATTTGTTT 263750 ||||||||| GATTTGTTT 948 ******************************************************************************** EST Sequence: file=LIBc9, strand=-, description=gi|32976761|dbj|AK066743.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083J07, full insert sequence 1 AAACAAATCA ATATACATTG ATATATAATA TTTCTGAAAC AAATCAATAT AATACATGGA 61 TCACGTACAG AGTACAGTAT ATATATGTGT GTGAGCTAGC TAGCTAGCTA GGTGTCATGT 121 CGTCGTCATC TAACTACAAC ACTCTTAACT CCCCTGACAA TAAAATTCAT CACCAGTAAG 181 TGACCATCTA TAGCTAGATG CAAGCAAAAC CAACAACTTG AATTAAAATT TTGTTTGATT 241 TCTGGATCGA TCCTAGATGC GGCCGGCAGT GCTCAGTCCA TCCTCCTCAC ACATTAATTA 301 ACTTGTGAAA AAATGAAGCT AACTAATTAA AGCAGAGGGG GTGAACATAT GCATGAGAGA 361 GCCAGCTGAT CGATGAGCTA ACTAGCTATA GCCATATATA TTTACTACTA GATGCAAGCA 421 TGCATGCAAG AATTAATATA TGTACTACTA TAAACTATAT ATATGTACAC TACACACAGA 481 TATGATGATT AATTAATTAA TCATGCTAGC ATGCATATGC AGGGAGAGGA TGATGATCGA 541 GATTAATTTA GCTAGCAGGC GGCGGACTTG GCGAAAGGGC TGAACAAGTG CGGGGCGGTG 601 GGCTTGTTGG TGCGGTCGGC GGCGGCGGTG GGGGAAGCTC CGGCGGCGGC GGCGGTGGCG 661 AGGCCCAGAG CTAGACCCAC GTCCTCATCA TCTTGCGCCA TCCACCACGC CAACAACCAA 721 GCGCTCTCTC TCTCTCTCTC TCCCTCTCTC TTGTGTGCTA GCTCTAGCTC TAGAGAGAGA 781 TGAAGGTAGG TAGCTATAGA GACGATGTGA GATGAGGAAG AAGAGAAGAG GGAGAAGGGG 841 C Genomic Template: file=OSchr10, strand=+, from=263450, to=266274, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 263750 264411 ( 662 n); cDNA 1 662 ( 662 n); score: 0.998 Intron 1 264412 265796 (1385 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 265797 265975 ( 179 n); cDNA 663 841 ( 179 n); score: 0.994 MATCH OSchr10-v3+ 32976761- 0.998 841 1.000 C PGS_OSchr10-v3+_32976761- (263750 264411,265797 265975) Alignment (genomic DNA sequence = upper lines): AAACAAATCA ATATACATTG ATATATAATA TTTCTGAAAC AAATCAATAT AATACATGGA 263809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAAATCA ATATACATTG ATATATAATA TTTCTGAAAC AAATCAATAT AATACATGGA 60 TCACGTACAG AGTACAGTAT ATATATGTGT GTGAGCTAGC TAGCTAGCTA GGTGTCATGT 263869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACGTACAG AGTACAGTAT ATATATGTGT GTGAGCTAGC TAGCTAGCTA GGTGTCATGT 120 CGTCGTCATC TAACTACAAC ACTCTTAACT CCCCTGACAA TAAAATTCAT CACCAGTAAG 263929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGTCATC TAACTACAAC ACTCTTAACT CCCCTGACAA TAAAATTCAT CACCAGTAAG 180 TGACCATCTA TAGCTAGATG CAAGCAAAAC CAACAACTTG AATTAAAATT TTGTTTGATT 263989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCATCTA TAGCTAGATG CAAGCAAAAC CAACAACTTG AATTAAAATT TTGTTTGATT 240 TCTGGATCGA TCCTAGATGC GGCCGGCAGT GCTCAGTCCA TCCTCCTCAC ACATTAATTA 264049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGATCGA TCCTAGATGC GGCCGGCAGT GCTCAGTCCA TCCTCCTCAC ACATTAATTA 300 ACTTGTGAAA AAATGAAGCT AACTAATTAA AGCAGAGGGG GTGAACATAT GCATGAGAGA 264109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGTGAAA AAATGAAGCT AACTAATTAA AGCAGAGGGG GTGAACATAT GCATGAGAGA 360 GCCAGCTGAT CGATGAGCTA ACTAGCTATA GCCATATATA TTTACTACTA GATGCAAGCA 264169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAGCTGAT CGATGAGCTA ACTAGCTATA GCCATATATA TTTACTACTA GATGCAAGCA 420 TGCATGCAAG AATTAATATA TGTACTACTA TAAACTATAT ATATGTACAC TACACACTGA 264229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TGCATGCAAG AATTAATATA TGTACTACTA TAAACTATAT ATATGTACAC TACACACAGA 480 TATGATGATT AATTAATTAA TCATGCTAGC ATGCATATGC AGGGAGAGGA TGATGATCGA 264289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGATGATT AATTAATTAA TCATGCTAGC ATGCATATGC AGGGAGAGGA TGATGATCGA 540 GATTAATTTA GCTAGCAGGC GGCGGACTTG GCGAAAGGGC TGAACAAGTG CGGGGCGGTG 264349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTAATTTA GCTAGCAGGC GGCGGACTTG GCGAAAGGGC TGAACAAGTG CGGGGCGGTG 600 GGCTTGTTGG TGCGGTCGGC GGCGGCGGTG GGGGAAGCTC CGGCGGCGGC GGCGGTGGCG 264409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTGTTGG TGCGGTCGGC GGCGGCGGTG GGGGAAGCTC CGGCGGCGGC GGCGGTGGCG 660 AGGCGCTCGC AGGAGGGGCA GATGGAGAGC GTGGCGGCGG GGACGGGGAG GGTGGTGGCC 264469 || AG........ .......... .......... .......... .......... .......... 662 ATGAAGAAGC CGGCGGCGGT GGAGTGGGTC AGAGCCCTGA GCTGCTGGAG CTCACGATGG 264529 .......... .......... .......... .......... .......... .......... 662 // intron part 264530 265729 (1200 n) not shown // //........ .......... .......... .......... .......... ........// CCGCCGACGA CGGCGCTTCG TCTCTACTTT CTCTCTGCCG CCTGTGGCCG CCGGAGCCCA 265789 .......... .......... .......... .......... .......... .......... 662 GGGAGAGGCC CAGAGCTAGA CCCACGTCCT CATCATCTTG CGCCATCCAC CACGCCAACA 265849 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCC CAGAGCTAGA CCCACGTCCT CATCATCTTG CGCCATCCAC CACGCCAACA 715 ACCAAGCGCT CTCTCTCTCT CTCTCTCCCT CTCTCTTGTG TGCTAGCTCT AGCTCTAGAG 265909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAGCGCT CTCTCTCTCT CTCTCTCCCT CTCTCTTGTG TGCTAGCTCT AGCTCTAGAG 775 AGAGATGAAG GTAGGTAGCT ATAGAGACGA TGTGAGATGA GGAAGAAGAG AAGAGGGAGA 265969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGATGAAG GTAGGTAGCT ATAGAGACGA TGTGAGATGA GGAAGAAGAG AAGAGGGAGA 835 AGGGGG 265975 ||||| AGGGGC 841 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32991753|dbj|AK106544.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F02, full insert sequence 1 CTCTCCTCTC CGCCATTAAA CCTCACAAAA ATAATTAAAA AAAATACCCC CAAACTTTGC 61 AAAATTTTTT CTCCCCAAAT CCACCCAAAA ATCCTTCATC CCCAATCTTC TCAATTCGCG 121 AATTCATCCT CTCCAGCAAT CGCCCCCCAG TTTTTGTTTT CTCTTTCTCT CTCTCGGTTT 181 TGTGTTTCTC GAGGTGTTTC TTTGTGGCCT TCTCGTCGCC ATTCTTGGTT GGATTAGGGT 241 TAGGGTTCGT CGGGATGAGG GTGCACGAGG AGGCGTCGGA AGACAAGGAG CGGGAGGTGG 301 AGGAGGCGCC GGACCTGATG CCGCTGTCTC CGCCGCTGAC CGCCGCCGCC ACTGCCGCCG 361 TGGTTGCGGT GGCGGGGCAG CGGCTGGTGG TGGGCTACGC CCTGACCAAG AAGAAGGTGA 421 AGAGCTTCCT CCAGCCCAAG CTGCTCTCGC TCGCCAGGAA GAAGAGCATT CATTTTGTAT 481 CAATTGATGA GACTCGTCCT CTCTCTGAAC AAGGCCCGTT TGATATTATA TTGCACAAGC 541 TTACTGACAA GGAGTGGCAG CAAGTTTTGG AGGATTATCG TGAAGAACAT CCAGAAGTAA 601 CTGTCCTTGA TCCACCTAAT GCTATTCAAC ATTTGCACAA TCGCCAGTCA ATGCTTCAAG 661 AAGTTGCTGA TTTGAACTTA TCAAATGCCT ATGGTGAGGT TTGCACTCCA CGACAGCTGG 721 TTATCATGAA AGACCCATTG TCTATACCAT CTGCAGTTGC CAAGGCTGGA CTAACGTTGC 781 CCTTGGTTGC CAAACCATTG GTAGTTGATG GAACATCGAA ATCCCATGAA CTATCTCTTG 841 CATATGTGGA GACATCCTTG TCAATGCTTG ATCCTCCTCT GGTTCTCCAG GAATTTGTCA 901 ATCATGGTGG GATCTTATTT AAGGTATATG TTGTTGGTGA AACAATACGT GTTGTTCGCC 961 GATTTTCTCT TCCTGATGTA AACATCTATG ATCTGGAAAA CAATGATGGC ATCTTCCGTT 1021 TTCCGAGAGT TTCCTGTGCT ACAAATACTG CAGAAGATGC AGAAGTTGAC CCTTCTATTG 1081 CTGAACTTCC TCCAAAGCCG CTTCTAGAGA AACTTGGGAG GGAGCTTCGG CGCAGACTGG 1141 GTCTTAGACT GTTTAACTTC GATATGATTA GAGAGCATGG AAGAAAGGAT CGGTACTATG 1201 TCATTGACAT CAACTATTTT CCTGGATATG GGAAAATGCC AGGCTATGAG CATATATTCA 1261 TTGACTTCCT ACTCAGCCTT GTGCAAAACA AGTACAAGAG GCGTTTAAGC GGGAGCTGAA 1321 GTGTAGAGAA TATATCCAGC CGAGAGTGAT ACCATTGACA ACAAAATGCC ACCAATGTTA 1381 GCTGGCAGCT TAGATAGATT TTTTTTTTCA GTTTGTACAG GTCAAGGAGA TGTTAGCTTT 1441 GAGGCAGATG CCTGACGAGC AGTTCAAAAA AAAAAAAAAG GCTGCTTAGT GCCAGGACGA 1501 TATTAAGAAC AAACAAAAAA AGGGAAAGAG AAAAAAGGTT CGGTCTCTCC GTGCCCAACC 1561 TGTGTAAATC GTTCACTGAG TTCCAGCCTG AAGCTTTTCA ACAAAATGAT GTGATTGCCC Genomic Template: file=OSchr10, strand=-, from=287353, to=280528, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 287053 286597 ( 457 n); cDNA 1 457 ( 457 n); score: 0.996 Intron 1 286596 284080 (2517 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 284079 283998 ( 82 n); cDNA 458 539 ( 82 n); score: 1.000 Intron 2 283997 283703 ( 295 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 0.60) Exon 3 283702 283545 ( 158 n); cDNA 540 693 ( 154 n); score: 0.873 Intron 3 283544 283094 ( 451 n); Pd: 0.781 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 4 283093 283001 ( 93 n); cDNA 694 786 ( 93 n); score: 1.000 Intron 4 283000 282803 ( 198 n); Pd: 0.913 (s: 1.00), Pa: 0.007 (s: 1.00) Exon 5 282802 282683 ( 120 n); cDNA 787 906 ( 120 n); score: 1.000 Intron 5 282682 282582 ( 101 n); Pd: 0.997 (s: 1.00), Pa: 0.886 (s: 1.00) Exon 6 282581 282405 ( 177 n); cDNA 907 1083 ( 177 n); score: 1.000 Intron 6 282404 281969 ( 436 n); Pd: 0.974 (s: 1.00), Pa: 0.955 (s: 1.00) Exon 7 281968 281913 ( 56 n); cDNA 1084 1139 ( 56 n); score: 1.000 Intron 7 281912 281840 ( 73 n); Pd: 0.999 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 8 281839 281755 ( 85 n); cDNA 1140 1224 ( 85 n); score: 1.000 Intron 8 281754 281222 ( 533 n); Pd: 0.457 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 9 281221 280828 ( 394 n); cDNA 1225 1620 ( 396 n); score: 0.987 MATCH OSchr10-v3- 32991753+ 0.983 1622 1.001 C PGS_OSchr10-v3-_32991753+ (287053 286597,284079 283998,283702 283545,283093 283001,282802 282683,282581 282405,281968 281913,281839 281755,281221 280828) Alignment (genomic DNA sequence = upper lines): CTCTCCTCTC CGCCATTAAA CCTCACAAAA ATAATTAAAA AAAATACCCC CAAACTTTGC 286994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCCTCTC CGCCATTAAA CCTCACAAAA ATAATTAAAA AAAATACCCC CAAACTTTGC 60 AAAATTTTTT CTCCCCAAAT CCACCCAAAA ATCCTTCATC CCCAATCTTC TCAATTCGCG 286934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTTTTT CTCCCCAAAT CCACCCAAAA ATCCTTCATC CCCAATCTTC TCAATTCGCG 120 AATTCATCCT CTCCAGCAAT CGCCCCCCAG TTTTTGTTTT CTCTTTCTCT CTCTCGATTT 286874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AATTCATCCT CTCCAGCAAT CGCCCCCCAG TTTTTGTTTT CTCTTTCTCT CTCTCGGTTT 180 TGTGTTTCTT GAGGTGTTTC TTTGTGGCCT TCTCGTCGCC ATTCTTGGTT GGATTAGGGT 286814 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTTTCTC GAGGTGTTTC TTTGTGGCCT TCTCGTCGCC ATTCTTGGTT GGATTAGGGT 240 TAGGGTTCGT CGGGATGAGG GTGCACGAGG AGGCGTCGGA AGACAAGGAG CGGGAGGTGG 286754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGGTTCGT CGGGATGAGG GTGCACGAGG AGGCGTCGGA AGACAAGGAG CGGGAGGTGG 300 AGGAGGCGCC GGACCTGATG CCGCTGTCTC CGCCGCTGAC CGCCGCCGCC ACTGCCGCCG 286694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGGCGCC GGACCTGATG CCGCTGTCTC CGCCGCTGAC CGCCGCCGCC ACTGCCGCCG 360 TGGTTGCGGT GGCGGGGCAG CGGCTGGTGG TGGGCTACGC CCTGACCAAG AAGAAGGTGA 286634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTGCGGT GGCGGGGCAG CGGCTGGTGG TGGGCTACGC CCTGACCAAG AAGAAGGTGA 420 AGAGCTTCCT CCAGCCCAAG CTGCTCTCGC TCGCCAGGTA ACTTCTTTAG TTGTGATCCC 286574 |||||||||| |||||||||| |||||||||| ||||||| AGAGCTTCCT CCAGCCCAAG CTGCTCTCGC TCGCCAG... .......... .......... 457 GCGTCAAATT TGGAATCTTT TCTGTGGCTC TCGGAGGAGG CGTCTTCGTC TTGTGGGGGG 286514 .......... .......... .......... .......... .......... .......... 457 // intron part 286513 284174 (2340 n) not shown // //........ .......... .......... .......... .......... ........// CATTGTTATG AACAGTACAC TGTGTTCGCA TTAGGTTTTT TCTTTATGTT AAATTTTTGC 284114 .......... .......... .......... .......... .......... .......... 457 AAGTTTCCTT AAACTGTTAA CCCTTTTCCT TCAGGAAGAA GAGCATTCAT TTTGTATCAA 284054 |||||| |||||||||| |||||||||| .......... .......... .......... ....GAAGAA GAGCATTCAT TTTGTATCAA 483 TTGATGAGAC TCGTCCTCTC TCTGAACAAG GCCCGTTTGA TATTATATTG CACAAGGTTA 283994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTGATGAGAC TCGTCCTCTC TCTGAACAAG GCCCGTTTGA TATTATATTG CACAAG.... 539 GTCCTCATGC CTCTCTTTGC ATGCATGAAA TCAAAAACAG TATGCCATAT ATTAGTTAGG 283934 .......... .......... .......... .......... .......... .......... 539 // intron part 283933 283814 (120 n) not shown // //........ .......... .......... .......... .......... ........// CTTTTTTATC AGCTTACTGA CAAGGAGTGG CAGCAAGTTT TGGAGGTAGT CCTTGAGCAC 283754 .......... .......... .......... .......... .......... .......... 539 CAAAGCAAAA ACTTTGATTC GATCAAAGAA AGAGTAAACA CTCTTCAATT CATTTTTGTC 283694 || || .......... .......... .......... .......... .......... .CTTACTG-A 547 CTTGTTGACC TTTTTCATCT TCTTGAAGGA TTATCGTGAA GAACATCCAG AAGTAACTGT 283634 | | || || | | ||| |||| |||||||||| |||||||||| |||||||||| CAAG--GAGT GGCAGCAAGT T-TTGGAGGA TTATCGTGAA GAACATCCAG AAGTAACTGT 604 CCTTGATCCA CCTAATGCTA TTCAACATTT GCACAATCGC CAGTCAATGC TTCAAGAAGT 283574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTGATCCA CCTAATGCTA TTCAACATTT GCACAATCGC CAGTCAATGC TTCAAGAAGT 664 TGCTGATTTG AACTTATCAA ATGCCTATGG TAAGTTTTGC ATATAATTAT TGAATGTTGG 283514 |||||||||| |||||||||| ||||||||| TGCTGATTTG AACTTATCAA ATGCCTATG. .......... .......... .......... 693 TACTCATATG GTATCGAAGA GATTGTGTTA TAGTTTCAAT GTTCTTACTA TTCACTTTAG 283454 .......... .......... .......... .......... .......... .......... 693 // intron part 283453 283154 (300 n) not shown // //........ .......... .......... .......... .......... ........// AAGAAAAATG CATAGCCTTT TGTTTGTTAT TTCTTGTGTT CAACCAATCA ACCAATGCAG 283094 .......... .......... .......... .......... .......... .......... 693 GTGAGGTTTG CACTCCACGA CAGCTGGTTA TCATGAAAGA CCCATTGTCT ATACCATCTG 283034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGGTTTG CACTCCACGA CAGCTGGTTA TCATGAAAGA CCCATTGTCT ATACCATCTG 753 CAGTTGCCAA GGCTGGACTA ACGTTGCCCT TGGGTGAGTT ATACAATTAT TCTACATCCA 282974 |||||||||| |||||||||| |||||||||| ||| CAGTTGCCAA GGCTGGACTA ACGTTGCCCT TGG....... .......... .......... 786 TGCTCAGCCT TAAAATTAGA GCACACTATC TATGTCACTA AGTCTTCTTT TTGAGGAATA 282914 .......... .......... .......... .......... .......... .......... 786 TATATAGAGG AATTCTAGGT TATCAATTTC CAATTCATTT CATCAAATCT GTTAAAAAAT 282854 .......... .......... .......... .......... .......... .......... 786 GGATGGCAAA ATTCTGGCAT GATTCTGATC AGAATAGTAC TCTATATACA GTTGCCAAAC 282794 ||||||||| .......... .......... .......... .......... .......... .TTGCCAAAC 795 CATTGGTAGT TGATGGAACA TCGAAATCCC ATGAACTATC TCTTGCATAT GTGGAGACAT 282734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGGTAGT TGATGGAACA TCGAAATCCC ATGAACTATC TCTTGCATAT GTGGAGACAT 855 CCTTGTCAAT GCTTGATCCT CCTCTGGTTC TCCAGGAATT TGTCAATCAT GGTAACTTAT 282674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CCTTGTCAAT GCTTGATCCT CCTCTGGTTC TCCAGGAATT TGTCAATCAT G......... 906 TTATCATGTT CAATTCTTGT TTCCAAATCT TTTATCTGTC CTAACACTTC CTCAAATGTG 282614 .......... .......... .......... .......... .......... .......... 906 GATATTGAAG TGCTGAGTTT TTTGTTGTAC AGGTGGGATC TTATTTAAGG TATATGTTGT 282554 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTGGGATC TTATTTAAGG TATATGTTGT 934 TGGTGAAACA ATACGTGTTG TTCGCCGATT TTCTCTTCCT GATGTAAACA TCTATGATCT 282494 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGAAACA ATACGTGTTG TTCGCCGATT TTCTCTTCCT GATGTAAACA TCTATGATCT 994 GGAAAACAAT GATGGCATCT TCCGTTTTCC GAGAGTTTCC TGTGCTACAA ATACTGCAGA 282434 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAACAAT GATGGCATCT TCCGTTTTCC GAGAGTTTCC TGTGCTACAA ATACTGCAGA 1054 AGATGCAGAA GTTGACCCTT CTATTGCTGG TGAGCCTTCT GTGTTGCTGT CAGACCTTTA 282374 |||||||||| |||||||||| ||||||||| AGATGCAGAA GTTGACCCTT CTATTGCTG. .......... .......... .......... 1083 TTATTCCATA TTGGGTGTAT AGTGGCATAT TTCCAAACCT TACAAATTTG GGAGTTTGGA 282314 .......... .......... .......... .......... .......... .......... 1083 // intron part 282313 282074 (240 n) not shown // //........ .......... .......... .......... .......... ........// AACAACTCAA TTGTTAAAGT TGTTTAGTCT GACCGAATAC CAACTTTCCA ATTATCAAAT 282014 .......... .......... .......... .......... .......... .......... 1083 TATAAACATA TTTATGTTAC TGAGCAAAAT GCCATAAAAT GACAGAACTT CCTCCAAAGC 281954 ||||| |||||||||| .......... .......... .......... .......... .....AACTT CCTCCAAAGC 1098 CGCTTCTAGA GAAACTTGGG AGGGAGCTTC GGCGCAGACT GGTATGAGTA AATCCCATTC 281894 |||||||||| |||||||||| |||||||||| |||||||||| | CGCTTCTAGA GAAACTTGGG AGGGAGCTTC GGCGCAGACT G......... .......... 1139 ATGTTAACAA TATCTGGTTT ATCATTTGTT ATACCTAACT GTAAAATATT TCAGGGTCTT 281834 |||||| .......... .......... .......... .......... .......... ....GGTCTT 1145 AGACTGTTTA ACTTCGATAT GATTAGAGAG CATGGAAGAA AGGATCGGTA CTATGTCATT 281774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTGTTTA ACTTCGATAT GATTAGAGAG CATGGAAGAA AGGATCGGTA CTATGTCATT 1205 GACATCAACT ATTTTCCTGG TGAGTCACAT TCTTGTGTTG TGTGTGGTCA AGTAGGGGGT 281714 |||||||||| ||||||||| GACATCAACT ATTTTCCTG. .......... .......... .......... .......... 1224 GCTCTGTGCA GTTTTCTAAT GCTCTGCCAC CATGAATGCT CTACTATTTT CTGGACAGTT 281654 .......... .......... .......... .......... .......... .......... 1224 // intron part 281653 281294 (360 n) not shown // //........ .......... .......... .......... .......... ........// TTCTTTTTGC TACCAGCACG TCATATATCC TCAAGATCAT GTTATATGAT TGTTGTACTT 281234 .......... .......... .......... .......... .......... .......... 1224 GAAATCCTGC AGGATATGGG AAAATGCCAG GCTATGAGCA TATATTCATT GACTTCCTAC 281174 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GATATGGG AAAATGCCAG GCTATGAGCA TATATTCATT GACTTCCTAC 1272 TCAGCCTTGT GCAAAACAAG TACAAGAGGC GTTTAAGCGG GAGCTGAAGT GTAGAGAATA 281114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCCTTGT GCAAAACAAG TACAAGAGGC GTTTAAGCGG GAGCTGAAGT GTAGAGAATA 1332 TATCCAGCCG AGAGTGATAC CATTGACAAC AAAATGCCAC CAATGTTAGC TGGCAGCTTA 281054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCAGCCG AGAGTGATAC CATTGACAAC AAAATGCCAC CAATGTTAGC TGGCAGCTTA 1392 GATAGATTTT TTTTTTCAGT TTGTACAGGT CAAGGAGATG TTAGCTTTGA GGCAGATGCC 280994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAGATTTT TTTTTTCAGT TTGTACAGGT CAAGGAGATG TTAGCTTTGA GGCAGATGCC 1452 TGACGAGCAG TTC--AAAAA AAAAAAAGGC TGCTTAGTGC CAGGACGATA TTAAGAACAA 280936 |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGAGCAG TTCAAAAAAA AAAAAAAGGC TGCTTAGTGC CAGGACGATA TTAAGAACAA 1512 ACAAAAAAAG GGAAAGAGAA AAAAGGTTCG GTCTCTCCGT GCCCAACCTG TGTAAATCGT 280876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAAAAAG GGAAAGAGAA AAAAGGTTCG GTCTCTCCGT GCCCAACCTG TGTAAATCGT 1572 TCACTGAGTT CCAGCCTGAA GCTTTTCAAC AAAATGATGT GATTGCCC 280828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TCACTGAGTT CCAGCCTGAA GCTTTTCAAC AAAATGATGT GATTGCCC 1620 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|38049158|gb|AY438036.1| Oryza sativa TNP2-like transposase RIM2 pseudogene mRNA, complete sequence 1 GACCCCTCTC TGCCTTTCCT CTCAAATGCA TTTCATCGAG CACCTTGTGT CCGTGCCTCC 61 ATAGCCATTG CTTGAAGCTG GAGCCGGTGC TGACGACCAC GGGAGCTGTG GCTTCGGGAT 121 GCCTCTGCTG CTGCTGCTAC CTTGGATCAA CTCCGGGTGC CGTTGTGACC TGAGGACCTG 181 CAGTCGAACA CCTGCGCGCT CGCTGTCGTC GTCCACCTCT GCTTCAGTGC CGTCTCCCCA 241 CCACGGCATC GAACATCGCC GTTTCGCCGC CTCTCGAATT TATTCGTGAG GCAACGTATG 301 CAGCTTCCAG GAGGTGAAGG TTGATCAAGA TTATATCAAT AATAAGGATT ATTCTGAGCA 361 GATGGATCGG CAATGGATGT ACGCTGACCG GCGGTCCAAA GAGTTTATTG ACGGCGTGCA 421 CTATTTTTTG AGAGTGGCCG AAGCTAACAG GCAAAGGGGT TTTATTTGTT GTCCATGCAA 481 TAAGTGTAAG AATCAGAAGG AGTATTCTGC ATCCAGGACT ATTCATTTCC ACTTGTTTGA 541 GTCGGGGTTC ATGCCAAGCT ATAACTGTTG GACATCCCAC GGAGAGCAAG GTGTTGAAAT 601 GGAAGAAGAT GAAGTGGAAG ACGACAATAT TCCGGACTTT GCTCAGTACG TTAGATTTGA 661 AGGAAATCAA ACGGGCGAGG AGGAAAGGGG TGCTGATGGT AACAACATTG CGGATGATCT 721 TGGTCAGATG TTGCAGGATG CCAAGGAGGA CTACGAAAGT GAAAAGGGGG CCCATAGATT 781 GGGCAAGATG TTAGAGGACC ACAGAACTTC GTTGTACCCA GGTTGCGAGC AGGGACACAA 841 AAAGTTGGAT ACCACTCTGG AGTTCTTGCA ATGGAAGGCA AAAAATGGGG TTCGTGACAA 901 GGCATTTGGC GATTTATTGA AACTCGTCAA GAACATTCTT CCGGAGGGAA ACAAATTGCC 961 CGAGACAACG TACGAGGCTA AGAAGATAGT CTGCTCGCTA GGACTGGAAG TTCAAAAGAT 1021 TCACGCATGT CCGAATGATT GTATCCTATA TCGCGGTGAG GAGTATGAGA ACCTAGAAGC 1081 ATGCCCTGTT TGCAAAGCAC TACGATACAA GATTAGACGA GGCGATCCAG GAGAAGTTGA 1141 CGGGCAGCTA ACAATGAAGA GAATTCCTGC TAAGGTGATG TGGTATTTCC CTATAATACC 1201 ACGGCTAAGG CGTTTGTTCA GGAACAAGGG GAATGCTAGA ATGAGGCGAT GGCATGCTGA 1261 AGAGCGTCAA CAGGACGGGA TGCTGAGACA TCCCGCCGAT GGTTCGCAGT GGCAAATCAT 1321 CGACAGAAAA TTTAAAGAAA ATTTGGAAAG GACGCACGAA ACATACGGTT TGGTTTGAGT 1381 ACGGATGGCA TGAATCCTTT TGGAGAGATG AGCAGCGGCC ATAGCACTTG GCCCGTTACG 1441 ATGTGTATCT ACAACCTCCT CCCCTGGCTA TGCATGAAGA GGAAGTACAT AATGATGCCG 1501 ATTATTATTC AAGGCCCCAA GCAACCTGGT AACGACATTG ATGTGTAACT AAGGCTACTG 1561 GTCGAAGATC TTAAGCTGTT GTGGAAGAAG GAAGGTGTCC TCGTGTGGGA CGAGGACAAA 1621 CAGGAGGAGT TTAACATACG AGCGCTGCTG TTCGTAACCA TCAACGATTG GCCTGCACTT 1681 AGCAACCTAT CCGGACAGTC CAACAAGGGG TACAAGGCTT GCACTCACTG TATGGATGAA 1741 ACAGAAAGTA CGTATCTTAA GTACTGTAGG AAGGTTGTAT ACATGGGTCA TCGTCGATTC 1801 CTTGCAGCAA ACCACCCGGT ACGGAAGAAA GGCAAGCACT TTGAATATAA GGCTGACCAC 1861 CGTACGAAGC CTAAACATCG TAGCGGGAAA ACAGTGTTTG CTATGGTTAA AGATCTTAAA 1921 GTAGTGTTCG AAAAGGGGTC TGGAAGCCAG CCTATAGAAA GCGAAGATGG TTACGCGGCG 1981 ATGTGGAAAA AGAAATCTAT ATTTTGGGAG TTACCATATT GGAAATTCTT GGACGTACGC 2041 CATGCAATCG ACGTGATGCA CCTCACTAAG AACCTTTGCG TAAACCTTCT TGGCTTCCTA 2101 GGTGTATACG GAAAGTCGAA AGATACACTG GAAGCACGTC ATGATCTGAA GCATATGGAA 2161 CAACGCGGCG ACCTACACCC GGAACCAAAG GAGAAAGGAA GCCATTACTT GAGTCCAGCC 2221 AGCTACACTC TTAGCAAAGC AGAGAAGGAA AGTATGTTTG AATGCTTGGA GAGCATAAAG 2281 GTACCGTCTG GATACTTCAC GAATATCAAG CGAATAATAA GCACGAAGGA GAAGAAGTTC 2341 ACAAACCTAA AGTCTCATGA CTGTCACGTG TTGATGACAC AACTGCTACC AGTTGTAATA 2401 AGGGATATCT TTCCAGACAA TGTCCGGGCA ACAATAACAA AGCTATGTGT ATTCATGAAC 2461 GTAATTTCGC AGAAGGTCAC CGATCCGGAT AGATTAGAAG CCCTTCAGAA TGATGTGGTG 2521 CAATGTCTTG TCAGTTTTGA GTTGATATTT CCACCTTCAT TTTTCAATAT AATGACGCAT 2581 CTACTTTGTC ACCTTATGAA AGAGATCAGT ATTCTCGGGC CTGTGTACCT ACACAACATG 2641 TTTCCTTTCG AGAGGTACAT GGGCGTTCTG AAGAAGTATG TTCGTAACCA TGCTCGTCCA 2701 GAGGCAAGCA TCGCCAAGGG TTATGGAACA GAGGAGGTCA TCGAATTTTG CGTAGAATTT 2761 ATCGAAGATC TTCGCCCAAT CGGGGTACCT GAATCACGCC ATGAAGGGAG ACTACGGGGA 2821 AAGGGAACTC TCGGAAGGAA AGCAATAATG ACGGTAGACA ACAATTTATT CCGTAAATCC 2881 CATTTCACGG TTCTGCAACA ATCTTCATTG GTAGCTCCTT ACATCGAGGA GCACATGGCT 2941 CTAGTTCGCG CCAGGAACAT CGGTAAGTCC GATGCATGGA TTACACGGCA TCACATTGAT 3001 ACTTTCCCCG CGTGGATACG ACAACATCTC ATGGGTAACG AGTCGATCAA CCAACAACTT 3061 GCCTTCCTGG CGAGGGGACC GTCTGGGTCG ATCGCGACAT TCTAGGGATA TGAGATCAAT 3121 GGGTACACAT TCTACACGAG AGCCCAAGAC ATGAAGAGCA TGAACCAAAA CAGCGCTGTT 3181 CGTGTCGATG CCATGGGACA CGATGGAACA ACTAGCACGT ATTACGGTGC CATCGAGGAC 3241 ATATGGGAAC TTGACTATGG TCCTCTCAAG GTCCCTCTGT TCCGGTGCCA ATGGGTTAGG 3301 TTGACTGGTG GAGGCGTAAT GATTGATGAC AGTGGGATGA CAACGGTTGA CCTTAACAAG 3361 GTTGGATACT CGGACGAATC TTTTGTCCTT GCCAATGATG TAACGAAAGT CTTTTTCGTG 3421 AAGGATATGT CTAGCAAAGG AAAGAAGGGC AGAGGGCCTG ACGAGCCTAA GCGTCACGTG 3481 GTTCTCCCAG GCAAAAGAAA AATCGTCAGA GTTGAGGACA AGACTGACGA GGATTGCGAT 3541 CAGTTGGATG GGCAACCCCC TTTCACGGTG ACGATTGACC CTAGCATCCT CCTATCAAAT 3601 GAAGACACCC CTTACTCACG TAGCGATCAC AAGGAGGGAA CAATAGTGAG GAGAAAGTAC 3661 GTGCGGTCAA CCGTCACCGC GGATGTATTG CCGTAATTAT TGTGTACACG ATGTAAACTA 3721 TTTTGGATGT ATTGATTATC CATATAAATC AATTGATGTA TGGCATATGC Genomic Template: file=OSchr10, strand=+, from=307030, to=311034, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 307339 310735 (3397 n); cDNA 362 3770 (3409 n); score: 0.960 MATCH OSchr10-v3+ 38049158+ 0.960 3397 0.901 C PGS_OSchr10-v3+_38049158+ (307339 310735) Alignment (genomic DNA sequence = upper lines): ATGGATCGGC AATGGATGTA CGCTGACCGA CGGTCCAAAG AGTTTATTGA CGGCGTGCAC 307398 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATGGATCGGC AATGGATGTA CGCTGACCGG CGGTCCAAAG AGTTTATTGA CGGCGTGCAC 421 TATTTTTTGA GAGTGGCCGA AGCTAACAGG CAAAGGGGTT TTATTTGTTG TCCATGCAAT 307458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTTTGA GAGTGGCCGA AGCTAACAGG CAAAGGGGTT TTATTTGTTG TCCATGCAAT 481 AAGTGTAAGA ATCAGAAGGA GTATTCTGCA TCCAGGACTA TTCATTTCCA CTTGTTTGAG 307518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGTAAGA ATCAGAAGGA GTATTCTGCA TCCAGGACTA TTCATTTCCA CTTGTTTGAG 541 TCAGGGTTCA TGCCAAGCTA TAATTATTGG ACATCCCACG GAGAGCAAGG TGTTGAAATG 307578 || ||||||| |||||||||| ||| | |||| |||||||||| |||||||||| |||||||||| TCGGGGTTCA TGCCAAGCTA TAACTGTTGG ACATCCCACG GAGAGCAAGG TGTTGAAATG 601 GAAGAAGATG AAATGGAAGA CGACAATATT CCGGATTTTG CTCAGTACGT TGGATTTGAA 307638 |||||||||| || ||||||| |||||||||| ||||| |||| |||||||||| | |||||||| GAAGAAGATG AAGTGGAAGA CGACAATATT CCGGACTTTG CTCAGTACGT TAGATTTGAA 661 GGAAATCAAA CGGGCGAGGA GGAAAGGGAT GCTGATGGTA ACGACGTTGC GGATGATCTT 307698 |||||||||| |||||||||| |||||||| | |||||||||| || || |||| |||||||||| GGAAATCAAA CGGGCGAGGA GGAAAGGGGT GCTGATGGTA ACAACATTGC GGATGATCTT 721 GGTCAGATGT TGCAGGACGC CAAGAAGGAC TGCGAAAGTG AAAAGGGAGC CCATAAATTG 307758 |||||||||| ||||||| || |||| ||||| | |||||||| ||||||| || ||||| |||| GGTCAGATGT TGCAGGATGC CAAGGAGGAC TACGAAAGTG AAAAGGGGGC CCATAGATTG 781 GACAAGATGT TAGAGGACCA CAGAACTTTG TTGTACCTAG GTTGCGAGCA GGGGCACAAA 307818 | |||||||| |||||||||| |||||||| | ||||||| || |||||||||| ||| |||||| GGCAAGATGT TAGAGGACCA CAGAACTTCG TTGTACCCAG GTTGCGAGCA GGGACACAAA 841 AAGTTGGATA CCACTCTGGA GTTCTTGCAA TGGAAGGCAA AAAATGGGGT TAGTGACAAG 307878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| AAGTTGGATA CCACTCTGGA GTTCTTGCAA TGGAAGGCAA AAAATGGGGT TCGTGACAAG 901 GCATTTGGCG ATTTATTGAA ACTCGTCAAG AACATTCTTC CGGAGGGAAA CAAATTGCCC 307938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATTTGGCG ATTTATTGAA ACTCGTCAAG AACATTCTTC CGGAGGGAAA CAAATTGCCC 961 --G---A-GT ACGAGGCTAA GAAGATAGTC TGCCCGCTAG GACTGGAAGT TCAGAAGATT 307992 | | || |||||||||| |||||||||| ||| |||||| |||||||||| ||| |||||| GAGACAACGT ACGAGGCTAA GAAGATAGTC TGCTCGCTAG GACTGGAAGT TCAAAAGATT 1021 CACGCATGTC CGAATGATTG TATCCTATAT CGCGGT---G AGTATGAGAA CCTAGAAGCA 308049 |||||||||| |||||||||| |||||||||| |||||| | |||||||||| |||||||||| CACGCATGTC CGAATGATTG TATCCTATAT CGCGGTGAGG AGTATGAGAA CCTAGAAGCA 1081 TGCCCTGTTT GCAAAGCACT ACAATACAAG ATTAGACGAG ACGATCCAGG AGAAGTTGAC 308109 |||||||||| |||||||||| || ||||||| |||||||||| ||||||||| |||||||||| TGCCCTGTTT GCAAAGCACT ACGATACAAG ATTAGACGAG GCGATCCAGG AGAAGTTGAC 1141 GGGCAGCTAA CAAAGAAGAG AATTCCTGCT AAGGTGATGT GGTATTTCCC TATAATACCA 308169 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCAGCTAA CAATGAAGAG AATTCCTGCT AAGGTGATGT GGTATTTCCC TATAATACCA 1201 CAGATAAGGC ATTTGTTCAG GAACAAGGGG AATGCTAGAA TGATACGATG GCACGCTGAA 308229 | | |||||| ||||||||| |||||||||| |||||||||| ||| ||||| ||| |||||| CGGCTAAGGC GTTTGTTCAG GAACAAGGGG AATGCTAGAA TGAGGCGATG GCATGCTGAA 1261 GAGCGTCAAC AGGATGGGAT GCTAAGACAC CCCGCCGATG GTTCGCAGTG GCGAAACATA 308289 |||||||||| |||| ||||| ||| ||||| |||||||||| |||||||||| || || ||| GAGCGTCAAC AGGACGGGAT GCTGAGACAT CCCGCCGATG GTTCGCAGTG GCAAATCATC 1321 GACAGAAAAT TTAAAG--AA TTTGGAAAGG ACGCACGAAA CATACGGTTT GGTTTGAGTA 308347 |||||||||| |||||| || |||||||||| |||||||||| |||||||||| |||||||||| GACAGAAAAT TTAAAGAAAA TTTGGAAAGG ACGCACGAAA CATACGGTTT GGTTTGAGTA 1381 CGGATGGCAT GAATCCTTTT GGAGAGATGA GCAGCGGCCA TAGCACTTGG CCCATTACGA 308407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| CGGATGGCAT GAATCCTTTT GGAGAGATGA GCAGCGGCCA TAGCACTTGG CCCGTTACGA 1441 TGTGTATCTA CAACCTCC-C CCCTGGCTAT GCATGAAGAG GAAGTACATA ATGATGCCGA 308466 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| TGTGTATCTA CAACCTCCTC CCCTGGCTAT GCATGAAGAG GAAGTACATA ATGATGCCGA 1501 TTATTATTCA AGGCCTCAAG CAACTTGGTA ACGACATCGA TGTGTACCTA AGACCACTGG 308526 |||||||||| ||||| |||| |||| ||||| ||||||| || |||||| ||| || | ||||| TTATTATTCA AGGCCCCAAG CAACCTGGTA ACGACATTGA TGTGTAACTA AGGCTACTGG 1561 TCGAAGATCT TAAGCTGTTG TGGAAGAAGG AAGGTGTCCC CGTGTGGGAC GAGGACAAAC 308586 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TCGAAGATCT TAAGCTGTTG TGGAAGAAGG AAGGTGTCCT CGTGTGGGAC GAGGACAAAC 1621 AGGAGGAGTT TAACATACGA GCGCTGCTGT TCGTAACCAT CAACGATTGG CCTGCACTTA 308646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGGAGTT TAACATACGA GCGCTGCTGT TCGTAACCAT CAACGATTGG CCTGCACTTA 1681 GCAACCTATC CGGACAATCC AACAAGGGGT ACAAGGCTTG CACTCACTGT ATGGATGAAA 308706 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACCTATC CGGACAGTCC AACAAGGGGT ACAAGGCTTG CACTCACTGT ATGGATGAAA 1741 CAGAAAGTAC GTATCTTAAG CACTGTAGGA AGGTTGTATA CATGGGTCAT CGTCGATTCC 308766 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CAGAAAGTAC GTATCTTAAG TACTGTAGGA AGGTTGTATA CATGGGTCAT CGTCGATTCC 1801 TTGCAGCAAA CCACCCGGTA CGGAAGAAAG GCAAGCACTT CGAACATAAG GCTGACCACC 308826 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| TTGCAGCAAA CCACCCGGTA CGGAAGAAAG GCAAGCACTT TGAATATAAG GCTGACCACC 1861 GTACGAAGTC TAAACATCGC AACGGGAAAA CAGTGTTTGC TATGGTTAAA GATCTTAAAG 308886 |||||||| | ||||||||| | |||||||| |||||||||| |||||||||| |||||||||| GTACGAAGCC TAAACATCGT AGCGGGAAAA CAGTGTTTGC TATGGTTAAA GATCTTAAAG 1921 TAGTGTTCGG AAAGGGGCCT GGAAGCCAGC CTATAGAGAG CGAAGATGGT CACGCGGCGA 308946 ||||||||| ||||||| || |||||||||| ||||||| || |||||||||| ||||||||| TAGTGTTCGA AAAGGGGTCT GGAAGCCAGC CTATAGAAAG CGAAGATGGT TACGCGGCGA 1981 TGTGGAAAAA GAACTCTATA TTTTGGGAGT TACCCTATTG GGAATTCTTG GACGTACGCC 309006 |||||||||| ||| |||||| |||||||||| |||| ||||| | |||||||| |||||||||| TGTGGAAAAA GAAATCTATA TTTTGGGAGT TACCATATTG GAAATTCTTG GACGTACGCC 2041 ACGCAATCGA CGTGATGCAC CTCACTAAGA ACCTTTGCGT AAACCTTCTT GGCTTCCTAG 309066 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAATCGA CGTGATGCAC CTCACTAAGA ACCTTTGCGT AAACCTTCTT GGCTTCCTAG 2101 GTGTATACGG AAAGTCGAAA GATACACTGG AAGCACATAA TGATCTGAAG CATATGGAAC 309126 |||||||||| |||||||||| |||||||||| |||||| | | |||||||||| |||||||||| GTGTATACGG AAAGTCGAAA GATACACTGG AAGCACGTCA TGATCTGAAG CATATGGAAC 2161 AACGCGGCGA CCTTCACCCG GAACCAAAGA AGAAAGGAAG CCATTACTTG AGTCTAGCCA 309186 |||||||||| ||| |||||| ||||||||| |||||||||| |||||||||| |||| ||||| AACGCGGCGA CCTACACCCG GAACCAAAGG AGAAAGGAAG CCATTACTTG AGTCCAGCCA 2221 GCTACACTCT TAGCAAGGCA GAGAAGGAAA GCATGTTTGA ATGCTTGGAG AGCATAAAGG 309246 |||||||||| |||||| ||| |||||||||| | |||||||| |||||||||| |||||||||| GCTACACTCT TAGCAAAGCA GAGAAGGAAA GTATGTTTGA ATGCTTGGAG AGCATAAAGG 2281 TACCGTCTGG ATACTCCACG AATATCAAAC GAATAATAAG CATGAAGGAG AAGAAGTTCA 309306 |||||||||| ||||| |||| |||||||| | |||||||||| || ||||||| |||||||||| TACCGTCTGG ATACTTCACG AATATCAAGC GAATAATAAG CACGAAGGAG AAGAAGTTCA 2341 CAAACCTAAA GTCTCATGAC TGTCACGTGT TGATGACACA ACTGCTACCA GTTGTAATAA 309366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACCTAAA GTCTCATGAC TGTCACGTGT TGATGACACA ACTGCTACCA GTTGTAATAA 2401 GGGGTATCCT TCCAGACAAT GTCCGGGCAA CAATAACAAA GCTATGTGCA TTCATGAACG 309426 ||| |||| | |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| GGGATATCTT TCCAGACAAT GTCCGGGCAA CAATAACAAA GCTATGTGTA TTCATGAACG 2461 TAATTTCGCA GAAGGTCATC GATCCGGATA TATTAGAAGC CCTTCAGAAT GATGTGGTGC 309486 |||||||||| |||||||| | |||||||||| ||||||||| |||||||||| |||||||||| TAATTTCGCA GAAGGTCACC GATCCGGATA GATTAGAAGC CCTTCAGAAT GATGTGGTGC 2521 AATGTCTCGT CAGTTTTGAG TTGATATTTC CACCTTCATT TTTCAATATA ATGACGCATC 309546 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTCTTGT CAGTTTTGAG TTGATATTTC CACCTTCATT TTTCAATATA ATGACGCATC 2581 TGCTTTGTCA CCTTGTGAAA GAGATCAGTA TTCTCGGGCC TGTGTACCTA CACAACATGT 309606 | |||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTTGTCA CCTTATGAAA GAGATCAGTA TTCTCGGGCC TGTGTACCTA CACAACATGT 2641 TTCCTTTCGA GAGGTACATG GGCGTTCTGA AGAAGTATGT TCGTAACCGT GCTCGTCCAG 309666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTCCTTTCGA GAGGTACATG GGCGTTCTGA AGAAGTATGT TCGTAACCAT GCTCGTCCAG 2701 AGGCAAGCAT CGCCAAGGGT TATGGAACAG AGGAGGTCAT CGAATTTTGC GTAGAATTTA 309726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCAAGCAT CGCCAAGGGT TATGGAACAG AGGAGGTCAT CGAATTTTGC GTAGAATTTA 2761 TCGAAGATCT TCGCCCAATC GGGGTACCTG AATCACGCCA TGAAGGGAGA CTACGGGGAA 309786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAAGATCT TCGCCCAATC GGGGTACCTG AATCACGCCA TGAAGGGAGA CTACGGGGAA 2821 AGGGAACTCT CGGAAGGAAA GCAATAATGA CGGTAGACAA CAATTTATTT CGTAAAGCCC 309846 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| ||| AGGGAACTCT CGGAAGGAAA GCAATAATGA CGGTAGACAA CAATTTATTC CGTAAATCCC 2881 ATTCCACAGT TCTGCAACAA TCTTCATTGG TAGCTCCTTA CATCGAGGAG CACTTGGCTC 309906 ||| ||| || |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ATTTCACGGT TCTGCAACAA TCTTCATTGG TAGCTCCTTA CATCGAGGAG CACATGGCTC 2941 TAGTTCGCGC CAGGAACATC GGTAAGTCCG ATGCATGGAT TACACGGCAT CACATTGATA 309966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTCGCGC CAGGAACATC GGTAAGTCCG ATGCATGGAT TACACGGCAT CACATTGATA 3001 CTTTCCCCGC GTGGATACGA CAACATCTCA TGGGTAATGA GTCGATCAAC CAACAACTTG 310026 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CTTTCCCCGC GTGGATACGA CAACATCTCA TGGGTAACGA GTCGATCAAC CAACAACTTG 3061 CCTTCCTAGC GAGGGGATCG TCTGGGTCGA TCGCGACATT CCAGGGATAT GAGATCAATG 310086 ||||||| || ||||||| || |||||||||| |||||||||| | |||||||| |||||||||| CCTTCCTGGC GAGGGGACCG TCTGGGTCGA TCGCGACATT CTAGGGATAT GAGATCAATG 3121 GGTACACATT CTACACGAGA GCCCAAGACA TGATGAGTAC GAACCAAAAC AGCGCTATTC 310146 |||||||||| |||||||||| |||||||||| ||| ||| | |||||||||| |||||| ||| GGTACACATT CTACACGAGA GCCCAAGACA TGAAGAGCAT GAACCAAAAC AGCGCTGTTC 3181 GTGTCGGTGC CATGGGACAC GATGGAACAA CTGGCACGTA TTACGGTGCC ATCGAGGACA 310206 |||||| ||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GTGTCGATGC CATGGGACAC GATGGAACAA CTAGCACGTA TTACGGTGCC ATCGAGGACA 3241 TATGGGAACT TGACTATGGT CCTCTCAAGG TCCCTCTGTT CCGGTGCCAA TGGGTTAGGT 310266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGGAACT TGACTATGGT CCTCTCAAGG TCCCTCTGTT CCGGTGCCAA TGGGTTAGGT 3301 TGACTGGTGG AGGCGTAATG ATTGATGACA GTGGGATGAC AACGGTTGAC CTTAACAAGG 310326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACTGGTGG AGGCGTAATG ATTGATGACA GTGGGATGAC AACGGTTGAC CTTAACAAGG 3361 TTGGATACTC GGACGAACCT TTTGTCCTTG CCAATGATGT AACGTAAGTC TTTTTCGTGA 310386 |||||||||| ||||||| || |||||||||| |||||||||| |||| ||||| |||||||||| TTGGATACTC GGACGAATCT TTTGTCCTTG CCAATGATGT AACGAAAGTC TTTTTCGTGA 3421 AGGACATGTC TAGCAAAGGA AAGAAGGGCA GAGGGCCTGA CGAGTCTAAG CGTCACGTGG 310446 |||| ||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| AGGATATGTC TAGCAAAGGA AAGAAGGGCA GAGGGCCTGA CGAGCCTAAG CGTCACGTGG 3481 TTCTCCCAGG CAAAAGAAAA ATCATCAGAG TTGAGGACAA GACTGACGAG GATTACGATT 310506 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||| |||| TTCTCCCAGG CAAAAGAAAA ATCGTCAGAG TTGAGGACAA GACTGACGAG GATTGCGATC 3541 AGTTGGATGG GCAACCCCCT TTCACGGTGA CAATTGACCC TAGCATCCTC CTATCAAATG 310566 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AGTTGGATGG GCAACCCCCT TTCACGGTGA CGATTGACCC TAGCATCCTC CTATCAAATG 3601 AAGACACCCC TTACTCACGT AGCGATCACA AGGAGGGAAC AATAGTGAGG AGAAAGTACG 310626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACACCCC TTACTCACGT AGCGATCACA AGGAGGGAAC AATAGTGAGG AGAAAGTACG 3661 TGCGGTCAAC CGTCACCGTC GATGTATTGC CGTAATTATT GTGTACACGA TGTAAACTAT 310686 |||||||||| |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGGTCAAC CGTCACCGCG GATGTATTGC CGTAATTATT GTGTACACGA TGTAAACTAT 3721 TTTGGATGTA TTGATTATCC ATATAAATCA ATTGATGTAT GGCATATGT 310735 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTGGATGTA TTGATTATCC ATATAAATCA ATTGATGTAT GGCATATGC 3770 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32975991|dbj|AK065973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048G07, full insert sequence 1 TCTGTTCGTA ACCATCAATG ATTGGCCTGC ACTTAGCAAC CTATCCGGAC AGTCCAACAA 61 GGGGTACAAG GCTTGCACTC ACTGTATGGA TGAAACAGAA AGTACGTATC TTAAGCACTG 121 TAGGAAGGTT GTATACATGG GTCATCGTCG ATTCCTTGCA GCAAACCACC CGGTACGGAA 181 GAAAGGCAAG CACTTTGAAC ATAAGGCTGA CCACCGTACG AAGCCTAAAC ATCGCAGCGG 241 GAAAACAGTG TTTGCTATGG TTAAAGATCT TAAAGTAGTG TTCGGAAAGG GGCCTGGAAG 301 CCAGCCTATA GAGAGCGAAG ATGGTCACGC GGTGATGTGG AAAAAGAACT CTATATTTTG 361 GGAGTTACCC TATTGGAAAT TCTTGGACGT ACACCACGCA ATCGACGTGA TGCACCTCAC 421 TAAGAACCTT TGCGTAAACC TTCTTGGCTT CCTAGGTGTA TACGGAAAGT CTAAAGATAC 481 ACTGGAAGCA CGTAATGATC TGAAGCATAT GGAACAACGC GGCGACCTTT ACCCGGAACC 541 AAAGGAGAAA GGAAGCCATT ACTTGAGTCC AGCCAGCTAC ACTCTTAGCA AGGCAGAGAA 601 GGAAAGTATG TTTGAATGCT TGGAGAGCAT AAAGGTACCG TCTGGATACT CCACGAATAT 661 CAAGCGAATA ATAAGCACGA AGGAGAAGAA GTTCACAAAC CTAAAGTCTC ATGACTGTCA 721 TGTGTTGATG ACACAACTGC TACCAGTTGT AATAAGTGGT ATCCTTCCAG ACAATGTCCG 781 GGCAACAATA ACAAAGCTAT GTGCATTCAT GAACGCAATT TCGCAGAAGG TCATCAATCC 841 AGATAGATTA GAAGCCCTTC AGAATGATGT GGTGCAATGT CTTGTCAGTT TTGAGTTGAT 901 ATTTCCACCT TCATTTTTCA ATATAATGAC GCATCTACTT TGTCACCTTA TGAAAGAGAT 961 TAGTATTCTC GGGCCTGTGT ACCTACACAA CATGTTTCCT TTCGAGAGGT ACATGGGCGT 1021 TCTGAAGAAG TATGTTCGTA ACCGTGCTCG TCCAGAGACA AGCATCGCCA AGGGTTATGG 1081 AACAGAGGAG GTCATCGAAT TTTGCGTAGA ATTTATCGAA GATCTTCGCC CAATCGGGGT 1141 ACCCGAATCA CGCCATGAAG GGAGACTACG GGGAAAGGGA ACTCTCGGAA GGAAAGCAAT 1201 AATGACGGTA AACAACAATT TATTCCGTAA AGACCATTTC ACGGTTCTGC AACAATCTTC 1261 ATTGGTAGCT CCTTACATCG AGGAGCACAT GGCTCTAGTT CGCGCCAGGA ACATCGGTAA 1321 GTCCGATGCA TGGATTACAC GGCATCACAT TGATACTTTC CCCGCGTGGA TACGACAACA 1381 TCTCATGGGT AACGAGTCGA TCAACCAACA ACTTGCCTTC CTGGCGAGGG GACCGTCTGG 1441 GTCGATCGCG ACATTCTAGG GATATGAGAT CAATGGGTAC ACATTCTACA CGAGAGCTCA 1501 AGACATGAAG AGCATGAACC AAAACAGCGT TGTTCGTGAC GATGCCATGG GACACGATGG 1561 AACAACTAGC ACGTATTACG GTGCCATCGA GGACATATGG GAACTTGACT ATGGTCCTCT 1621 CAAGGTCCCT CTGTTCCGGT GCCAATGGGT TAGGTTGACT GGTGGAGGCG TAATGATTGA 1681 TGACAGTGGG ATGACAACGG TTGACCTTAA CAAGGTTGGA TACTCGGATG AACCTTTTGT 1741 CCTTGCCAAT GATGTAACGA AAGTCTTTTT CGTGAAGGAT ATGTCTAGCA AAGGAAAGAA 1801 GAGCAGAGGG CCTGACGAGC CTAAGCGTCA CGTGGTTCTC CCAGGCAAAA GAAAAATCGT 1861 CGGAGTTGAG GACAAGACTG ACGAGGGTTA CGATCAGTTG GATGGGCAAC CCCCTTTCAC 1921 GGTGACGATT GACCCTAGCA TCCTCCTATC AAATGAAGAC ACCCCTTACT CATGTAGCGA 1981 TCACAAGGAG GGAACAATAG TGAGGAGAAA GTACGTGCGG TCAACCGTCA CCGCCGATGT 2041 ATTGCCGTAA TTATTGTGTA CACGATGTAA ACTATTTTGG ATGTATTGAT TATCCATATA 2101 AATCAATTGA TGTATGGCAT ATGTTAATT Genomic Template: file=OSchr10, strand=+, from=308313, to=311040, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 308612 310740 (2129 n); cDNA 1 2129 (2129 n); score: 0.972 MATCH OSchr10-v3+ 32975991+ 0.972 2129 1.000 C PGS_OSchr10-v3+_32975991+ (308612 310740) Alignment (genomic DNA sequence = upper lines): GCTGTTCGTA ACCATCAACG ATTGGCCTGC ACTTAGCAAC CTATCCGGAC AATCCAACAA 308671 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| | |||||||| TCTGTTCGTA ACCATCAATG ATTGGCCTGC ACTTAGCAAC CTATCCGGAC AGTCCAACAA 60 GGGGTACAAG GCTTGCACTC ACTGTATGGA TGAAACAGAA AGTACGTATC TTAAGCACTG 308731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTACAAG GCTTGCACTC ACTGTATGGA TGAAACAGAA AGTACGTATC TTAAGCACTG 120 TAGGAAGGTT GTATACATGG GTCATCGTCG ATTCCTTGCA GCAAACCACC CGGTACGGAA 308791 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGAAGGTT GTATACATGG GTCATCGTCG ATTCCTTGCA GCAAACCACC CGGTACGGAA 180 GAAAGGCAAG CACTTCGAAC ATAAGGCTGA CCACCGTACG AAGTCTAAAC ATCGCAACGG 308851 |||||||||| ||||| |||| |||||||||| |||||||||| ||| |||||| |||||| ||| GAAAGGCAAG CACTTTGAAC ATAAGGCTGA CCACCGTACG AAGCCTAAAC ATCGCAGCGG 240 GAAAACAGTG TTTGCTATGG TTAAAGATCT TAAAGTAGTG TTCGGAAAGG GGCCTGGAAG 308911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAACAGTG TTTGCTATGG TTAAAGATCT TAAAGTAGTG TTCGGAAAGG GGCCTGGAAG 300 CCAGCCTATA GAGAGCGAAG ATGGTCACGC GGCGATGTGG AAAAAGAACT CTATATTTTG 308971 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| CCAGCCTATA GAGAGCGAAG ATGGTCACGC GGTGATGTGG AAAAAGAACT CTATATTTTG 360 GGAGTTACCC TATTGGGAAT TCTTGGACGT ACGCCACGCA ATCGACGTGA TGCACCTCAC 309031 |||||||||| |||||| ||| |||||||||| || ||||||| |||||||||| |||||||||| GGAGTTACCC TATTGGAAAT TCTTGGACGT ACACCACGCA ATCGACGTGA TGCACCTCAC 420 TAAGAACCTT TGCGTAAACC TTCTTGGCTT CCTAGGTGTA TACGGAAAGT CGAAAGATAC 309091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TAAGAACCTT TGCGTAAACC TTCTTGGCTT CCTAGGTGTA TACGGAAAGT CTAAAGATAC 480 ACTGGAAGCA CATAATGATC TGAAGCATAT GGAACAACGC GGCGACCTTC ACCCGGAACC 309151 |||||||||| | |||||||| |||||||||| |||||||||| ||||||||| |||||||||| ACTGGAAGCA CGTAATGATC TGAAGCATAT GGAACAACGC GGCGACCTTT ACCCGGAACC 540 AAAGAAGAAA GGAAGCCATT ACTTGAGTCT AGCCAGCTAC ACTCTTAGCA AGGCAGAGAA 309211 |||| ||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AAAGGAGAAA GGAAGCCATT ACTTGAGTCC AGCCAGCTAC ACTCTTAGCA AGGCAGAGAA 600 GGAAAGCATG TTTGAATGCT TGGAGAGCAT AAAGGTACCG TCTGGATACT CCACGAATAT 309271 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAGTATG TTTGAATGCT TGGAGAGCAT AAAGGTACCG TCTGGATACT CCACGAATAT 660 CAAACGAATA ATAAGCATGA AGGAGAAGAA GTTCACAAAC CTAAAGTCTC ATGACTGTCA 309331 ||| |||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| CAAGCGAATA ATAAGCACGA AGGAGAAGAA GTTCACAAAC CTAAAGTCTC ATGACTGTCA 720 CGTGTTGATG ACACAACTGC TACCAGTTGT AATAAGGGGT ATCCTTCCAG ACAATGTCCG 309391 ||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TGTGTTGATG ACACAACTGC TACCAGTTGT AATAAGTGGT ATCCTTCCAG ACAATGTCCG 780 GGCAACAATA ACAAAGCTAT GTGCATTCAT GAACGTAATT TCGCAGAAGG TCATCGATCC 309451 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ||||| |||| GGCAACAATA ACAAAGCTAT GTGCATTCAT GAACGCAATT TCGCAGAAGG TCATCAATCC 840 GGATATATTA GAAGCCCTTC AGAATGATGT GGTGCAATGT CTCGTCAGTT TTGAGTTGAT 309511 |||| |||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| AGATAGATTA GAAGCCCTTC AGAATGATGT GGTGCAATGT CTTGTCAGTT TTGAGTTGAT 900 ATTTCCACCT TCATTTTTCA ATATAATGAC GCATCTGCTT TGTCACCTTG TGAAAGAGAT 309571 |||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| |||||||||| ATTTCCACCT TCATTTTTCA ATATAATGAC GCATCTACTT TGTCACCTTA TGAAAGAGAT 960 CAGTATTCTC GGGCCTGTGT ACCTACACAA CATGTTTCCT TTCGAGAGGT ACATGGGCGT 309631 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTATTCTC GGGCCTGTGT ACCTACACAA CATGTTTCCT TTCGAGAGGT ACATGGGCGT 1020 TCTGAAGAAG TATGTTCGTA ACCGTGCTCG TCCAGAGGCA AGCATCGCCA AGGGTTATGG 309691 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TCTGAAGAAG TATGTTCGTA ACCGTGCTCG TCCAGAGACA AGCATCGCCA AGGGTTATGG 1080 AACAGAGGAG GTCATCGAAT TTTGCGTAGA ATTTATCGAA GATCTTCGCC CAATCGGGGT 309751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGAGGAG GTCATCGAAT TTTGCGTAGA ATTTATCGAA GATCTTCGCC CAATCGGGGT 1140 ACCTGAATCA CGCCATGAAG GGAGACTACG GGGAAAGGGA ACTCTCGGAA GGAAAGCAAT 309811 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCGAATCA CGCCATGAAG GGAGACTACG GGGAAAGGGA ACTCTCGGAA GGAAAGCAAT 1200 AATGACGGTA GACAACAATT TATTTCGTAA AGCCCATTCC ACAGTTCTGC AACAATCTTC 309871 |||||||||| ||||||||| |||| ||||| || ||||| | || ||||||| |||||||||| AATGACGGTA AACAACAATT TATTCCGTAA AGACCATTTC ACGGTTCTGC AACAATCTTC 1260 ATTGGTAGCT CCTTACATCG AGGAGCACTT GGCTCTAGTT CGCGCCAGGA ACATCGGTAA 309931 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| ATTGGTAGCT CCTTACATCG AGGAGCACAT GGCTCTAGTT CGCGCCAGGA ACATCGGTAA 1320 GTCCGATGCA TGGATTACAC GGCATCACAT TGATACTTTC CCCGCGTGGA TACGACAACA 309991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCGATGCA TGGATTACAC GGCATCACAT TGATACTTTC CCCGCGTGGA TACGACAACA 1380 TCTCATGGGT AATGAGTCGA TCAACCAACA ACTTGCCTTC CTAGCGAGGG GATCGTCTGG 310051 |||||||||| || ||||||| |||||||||| |||||||||| || ||||||| || ||||||| TCTCATGGGT AACGAGTCGA TCAACCAACA ACTTGCCTTC CTGGCGAGGG GACCGTCTGG 1440 GTCGATCGCG ACATTCCAGG GATATGAGAT CAATGGGTAC ACATTCTACA CGAGAGCCCA 310111 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ||||||| || GTCGATCGCG ACATTCTAGG GATATGAGAT CAATGGGTAC ACATTCTACA CGAGAGCTCA 1500 AGACATGATG AGTACGAACC AAAACAGCGC TATTCGTGTC GGTGCCATGG GACACGATGG 310171 |||||||| | || | ||||| ||||||||| | |||||| | | |||||||| |||||||||| AGACATGAAG AGCATGAACC AAAACAGCGT TGTTCGTGAC GATGCCATGG GACACGATGG 1560 AACAACTGGC ACGTATTACG GTGCCATCGA GGACATATGG GAACTTGACT ATGGTCCTCT 310231 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAACTAGC ACGTATTACG GTGCCATCGA GGACATATGG GAACTTGACT ATGGTCCTCT 1620 CAAGGTCCCT CTGTTCCGGT GCCAATGGGT TAGGTTGACT GGTGGAGGCG TAATGATTGA 310291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGTCCCT CTGTTCCGGT GCCAATGGGT TAGGTTGACT GGTGGAGGCG TAATGATTGA 1680 TGACAGTGGG ATGACAACGG TTGACCTTAA CAAGGTTGGA TACTCGGACG AACCTTTTGT 310351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TGACAGTGGG ATGACAACGG TTGACCTTAA CAAGGTTGGA TACTCGGATG AACCTTTTGT 1740 CCTTGCCAAT GATGTAACGT AAGTCTTTTT CGTGAAGGAC ATGTCTAGCA AAGGAAAGAA 310411 |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CCTTGCCAAT GATGTAACGA AAGTCTTTTT CGTGAAGGAT ATGTCTAGCA AAGGAAAGAA 1800 GGGCAGAGGG CCTGACGAGT CTAAGCGTCA CGTGGTTCTC CCAGGCAAAA GAAAAATCAT 310471 | |||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||| | GAGCAGAGGG CCTGACGAGC CTAAGCGTCA CGTGGTTCTC CCAGGCAAAA GAAAAATCGT 1860 CAGAGTTGAG GACAAGACTG ACGAGGATTA CGATTAGTTG GATGGGCAAC CCCCTTTCAC 310531 | |||||||| |||||||||| |||||| ||| |||| ||||| |||||||||| |||||||||| CGGAGTTGAG GACAAGACTG ACGAGGGTTA CGATCAGTTG GATGGGCAAC CCCCTTTCAC 1920 GGTGACAATT GACCCTAGCA TCCTCCTATC AAATGAAGAC ACCCCTTACT CACGTAGCGA 310591 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| GGTGACGATT GACCCTAGCA TCCTCCTATC AAATGAAGAC ACCCCTTACT CATGTAGCGA 1980 TCACAAGGAG GGAACAATAG TGAGGAGAAA GTACGTGCGG TCAACCGTCA CCGTCGATGT 310651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TCACAAGGAG GGAACAATAG TGAGGAGAAA GTACGTGCGG TCAACCGTCA CCGCCGATGT 2040 ATTGCCGTAA TTATTGTGTA CACGATGTAA ACTATTTTGG ATGTATTGAT TATCCATATA 310711 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCCGTAA TTATTGTGTA CACGATGTAA ACTATTTTGG ATGTATTGAT TATCCATATA 2100 AATCAATTGA TGTATGGCAT ATGTTAATT 310740 |||||||||| |||||||||| ||||||||| AATCAATTGA TGTATGGCAT ATGTTAATT 2129 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32971991|dbj|AK061973.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H11, full insert sequence 1 TCACAAACCT AAAGTCTCAT GACTGTCACG TGTTGATGAC ACAACTGCTA CCAGTTGTAA 61 TAAGGGGTAT CCTTCCAGAC AATGTCCGGG CAACAATAAC AAAGCTATGT GCATTCATGA 121 ACGCAATTTC GCAGAAGGTC ATCTATCCGG ATAGATTAGA AGCCCTTCAG AATGAAGTGG 181 TGCAATGTCT CGTCAGTTTT GAGTTGATAT TTCCACCTTC ATTTTTCAAT ATAATGACGC 241 ATCTGCTTTG TCACCTTGTG AAAGAGATCC GTATTCTCGG GCCTATGTAC CTACACAACA 301 TGTTTCCTTT CGAGAGGTAC ATGGGCGTTC TGAAGAAGTA TGTTCGTAAC CGTGCTCGTC 361 CAGAGGGAAG CATCGCCAAG GGTTATGGAA CAGAGGAGGT CATCGAATTT TGCGTAGAAT 421 TTATCGAAGA CCTTCGCCCA ATCGGGGTAC CTGAATCACG CCATGAAGGG AGACTACGGG 481 GAAAGGGAAC TCTCGGAAGG AAAGCAATAA CGACGGTAGA CAACAATTCA TTCCGTAAAG 541 CCCATTTCAC TGTTCTGCAA CACTCTTCAT TGGTAGCTCC TTACATCGAG GAGCACTTGG 601 CTCTAGTTCG CGCCAGGAAC ATCGGTAAGT CCGATGCATG GATTACACGG CATCACATTG 661 ATACTTTCCC CGCGTGGCTA CGACAACATC TCATGGGTAA CGAGTCGATC AACCAACAAC 721 TTGCCTTCCT GGCGAGGGGA TCGTCTGGGT CGATCGCGAC ATTCCAGGGA TATGAGATCA 781 ATGGGTACAC ATTCTACACG AGAGCCCAAG ACATGAAGAG CACGAACCAA AACAACGCTG 841 TTCGTGTCGA TGCCATGGGA CACGATGGAA CAACTGCCAC GTATTACGGT GCCATCGAGG 901 ACATATGGGA ACTTGACTAT GGCCCTCTCA AGGTTCCTCT GTTCCGGTGC CAATGGGTTA 961 GGTTGACTGG TGGAGGCGTA ATGATTGATG ACAGTGGGAT GACAACTGTT GACCTTAACA 1021 AGGTTGGATA CTCGGACGAA CCTTTTGTCC TTGCCAATGA TGTAACGCAA GTCTTTTTCG 1081 TGAAGGACAT GTCTAGCAAA GGAAAGAAGG GCAGAGGGCC TGATGAGCCT AAGCGTCAAG 1141 TGGTTCTCCC AGGCAAAAGA AAAATCGTCG GAGTTGAGGA CAAGACTGAC GAGGATTACG 1201 ATCAGTTGGA TGGGCAACCC CCTTTCACGG TGACGATTGA CCCTAGCATC CTCCTATCAA 1261 ATGAAGACAC CCCTTACTCA CGCAGCGATC ACAAGGAGGG AACAATAGTG AGGAGAAAGT 1321 ACGTGCCGTA ATTATTGTGT ACACGATGTA AACTATTTTG GATGTATTGA TTATCCATAT 1381 AAATCAATTG ATGTATGGCA TATGTTAATT ACGCACGATT Genomic Template: file=OSchr10, strand=+, from=309004, to=311050, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 309304 310627 (1324 n); cDNA 1 1324 (1324 n); score: 0.974 MATCH OSchr10-v3+ 32971991+ 0.974 1324 0.932 C PGS_OSchr10-v3+_32971991+ (309304 310627) Alignment (genomic DNA sequence = upper lines): TCACAAACCT AAAGTCTCAT GACTGTCACG TGTTGATGAC ACAACTGCTA CCAGTTGTAA 309363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAAACCT AAAGTCTCAT GACTGTCACG TGTTGATGAC ACAACTGCTA CCAGTTGTAA 60 TAAGGGGTAT CCTTCCAGAC AATGTCCGGG CAACAATAAC AAAGCTATGT GCATTCATGA 309423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGGGGTAT CCTTCCAGAC AATGTCCGGG CAACAATAAC AAAGCTATGT GCATTCATGA 120 ACGTAATTTC GCAGAAGGTC ATCGATCCGG ATATATTAGA AGCCCTTCAG AATGATGTGG 309483 ||| |||||| |||||||||| ||| |||||| ||| |||||| |||||||||| ||||| |||| ACGCAATTTC GCAGAAGGTC ATCTATCCGG ATAGATTAGA AGCCCTTCAG AATGAAGTGG 180 TGCAATGTCT CGTCAGTTTT GAGTTGATAT TTCCACCTTC ATTTTTCAAT ATAATGACGC 309543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAATGTCT CGTCAGTTTT GAGTTGATAT TTCCACCTTC ATTTTTCAAT ATAATGACGC 240 ATCTGCTTTG TCACCTTGTG AAAGAGATCA GTATTCTCGG GCCTGTGTAC CTACACAACA 309603 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| ATCTGCTTTG TCACCTTGTG AAAGAGATCC GTATTCTCGG GCCTATGTAC CTACACAACA 300 TGTTTCCTTT CGAGAGGTAC ATGGGCGTTC TGAAGAAGTA TGTTCGTAAC CGTGCTCGTC 309663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTCCTTT CGAGAGGTAC ATGGGCGTTC TGAAGAAGTA TGTTCGTAAC CGTGCTCGTC 360 CAGAGGCAAG CATCGCCAAG GGTTATGGAA CAGAGGAGGT CATCGAATTT TGCGTAGAAT 309723 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGGGAAG CATCGCCAAG GGTTATGGAA CAGAGGAGGT CATCGAATTT TGCGTAGAAT 420 TTATCGAAGA TCTTCGCCCA ATCGGGGTAC CTGAATCACG CCATGAAGGG AGACTACGGG 309783 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCGAAGA CCTTCGCCCA ATCGGGGTAC CTGAATCACG CCATGAAGGG AGACTACGGG 480 GAAAGGGAAC TCTCGGAAGG AAAGCAATAA TGACGGTAGA CAACAATTTA TTTCGTAAAG 309843 |||||||||| |||||||||| |||||||||| ||||||||| |||||||| | || ||||||| GAAAGGGAAC TCTCGGAAGG AAAGCAATAA CGACGGTAGA CAACAATTCA TTCCGTAAAG 540 CCCATTCCAC AGTTCTGCAA CAATCTTCAT TGGTAGCTCC TTACATCGAG GAGCACTTGG 309903 |||||| ||| ||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CCCATTTCAC TGTTCTGCAA CACTCTTCAT TGGTAGCTCC TTACATCGAG GAGCACTTGG 600 CTCTAGTTCG CGCCAGGAAC ATCGGTAAGT CCGATGCATG GATTACACGG CATCACATTG 309963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTAGTTCG CGCCAGGAAC ATCGGTAAGT CCGATGCATG GATTACACGG CATCACATTG 660 ATACTTTCCC CGCGTGGATA CGACAACATC TCATGGGTAA TGAGTCGATC AACCAACAAC 310023 |||||||||| ||||||| || |||||||||| |||||||||| ||||||||| |||||||||| ATACTTTCCC CGCGTGGCTA CGACAACATC TCATGGGTAA CGAGTCGATC AACCAACAAC 720 TTGCCTTCCT AGCGAGGGGA TCGTCTGGGT CGATCGCGAC ATTCCAGGGA TATGAGATCA 310083 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCTTCCT GGCGAGGGGA TCGTCTGGGT CGATCGCGAC ATTCCAGGGA TATGAGATCA 780 ATGGGTACAC ATTCTACACG AGAGCCCAAG ACATGATGAG TACGAACCAA AACAGCGCTA 310143 |||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| |||| |||| ATGGGTACAC ATTCTACACG AGAGCCCAAG ACATGAAGAG CACGAACCAA AACAACGCTG 840 TTCGTGTCGG TGCCATGGGA CACGATGGAA CAACTGGCAC GTATTACGGT GCCATCGAGG 310203 ||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TTCGTGTCGA TGCCATGGGA CACGATGGAA CAACTGCCAC GTATTACGGT GCCATCGAGG 900 ACATATGGGA ACTTGACTAT GGTCCTCTCA AGGTCCCTCT GTTCCGGTGC CAATGGGTTA 310263 |||||||||| |||||||||| || ||||||| |||| ||||| |||||||||| |||||||||| ACATATGGGA ACTTGACTAT GGCCCTCTCA AGGTTCCTCT GTTCCGGTGC CAATGGGTTA 960 GGTTGACTGG TGGAGGCGTA ATGATTGATG ACAGTGGGAT GACAACGGTT GACCTTAACA 310323 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GGTTGACTGG TGGAGGCGTA ATGATTGATG ACAGTGGGAT GACAACTGTT GACCTTAACA 1020 AGGTTGGATA CTCGGACGAA CCTTTTGTCC TTGCCAATGA TGTAACGTAA GTCTTTTTCG 310383 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| AGGTTGGATA CTCGGACGAA CCTTTTGTCC TTGCCAATGA TGTAACGCAA GTCTTTTTCG 1080 TGAAGGACAT GTCTAGCAAA GGAAAGAAGG GCAGAGGGCC TGACGAGTCT AAGCGTCACG 310443 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||| || |||||||| | TGAAGGACAT GTCTAGCAAA GGAAAGAAGG GCAGAGGGCC TGATGAGCCT AAGCGTCAAG 1140 TGGTTCTCCC AGGCAAAAGA AAAATCATCA GAGTTGAGGA CAAGACTGAC GAGGATTACG 310503 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| TGGTTCTCCC AGGCAAAAGA AAAATCGTCG GAGTTGAGGA CAAGACTGAC GAGGATTACG 1200 ATTAGTTGGA TGGGCAACCC CCTTTCACGG TGACAATTGA CCCTAGCATC CTCCTATCAA 310563 || ||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ATCAGTTGGA TGGGCAACCC CCTTTCACGG TGACGATTGA CCCTAGCATC CTCCTATCAA 1260 ATGAAGACAC CCCTTACTCA CGTAGCGATC ACAAGGAGGG AACAATAGTG AGGAGAAAGT 310623 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ATGAAGACAC CCCTTACTCA CGCAGCGATC ACAAGGAGGG AACAATAGTG AGGAGAAAGT 1320 ACGT 310627 |||| ACGT 1324 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|37991726|dbj|AK122080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120J20, full insert sequence 1 GGGGGTGTGG CGTGTTGTGT TGTTGCCTCC GCCTCCGCCG CCGGCCGCTC GAGCCTCCTC 61 CTCTCCCGCC AGCCGCCGCC GCCGCCGCCG CTGCTTGCTT GCGATTTTTC AGATGGAGAG 121 CCCGAATCAG AACCAGCAGC AGGAGAGCAG CAGCGGAAGC AGCGTGATGT GCCAGCTGGT 181 CAGTCCCGAA GGAGACCACC TTGGCGCCGC CCTCTACTTG CCTCACAACG TCGGCCCGCC 241 GCAGCTGCAG GAGATCGTCA ACCATCTTCT CCACAACGAG GACAAGCTGC CATATGCATT 301 CTACATCGGA GATGAAGAAC TCTCTGTCCA GCTTGGTGCT TACATGCAGC AAAAGAATGC 361 AAATGTTGAG GTTACCCTGC GCATAGTATA TCAACCGCAG GCAATTTTCC GTATCAGGCC 421 AGTCAACCGA TGCTCTGCTA CAATTACTGG CCATACAGAA GCTGTACTAG CAGTTTCCTT 481 CAGTCCTGAT GGAAGATGTT TGGCTAGTGG TTCTGGTGAT ACCACTGTTA GGTTTTGGGA 541 TCTGAGCACA CAGACCCCAT TGTTCACATG CAAAGGACAC AAAAACTGGG TCCTCTGCAT 601 TGCATGGTCG CCTGATGGGA ATCATCTTGT TAGTGGAAGC AAGTCAGGGG AACTTATATT 661 ATGGGACCCG AAAACAGGCA AGCAATTGGG GACTCCACTT ACGGGGCATA GGAAGTGGAT 721 TACTGCTGTA TCTTGGGAGC CAGTTCATTT GCAATCTCCT TGCCGCCGTT TTGTAAGTAC 781 AAGTAAGGAT GGTGATGCAC GTATTTGGGA TATGACCACA AGGAAGTGTG TCATTGCCCT 841 TACAGGTCAC ACTAATTCAG TGACTTGTGT GAAGTGGGGT GGAGATGGTT TGATTTACAC 901 TGGTTCTGAA GATTGTTCAA TCAAAGTGTG GGAAACTTCT CAGGGAAAAT TGGTCAAAAC 961 ACTGCAGGGT CATGGTCACT GGGTCAATTC ACTTGCTTTG AGCACCGAGT ATGTTTTGCG 1021 CACAGGGGCA TATGACCATA CTGGCAAGAC ATATTCAACA GCAGAGGAAA TGAAGGAGGC 1081 AGCTCTTGCG AGATACAAGA AGATGAGGGG CAATGCACCT GAGAGACTAG TTTCTGGTTC 1141 TGATGATTTT ACGATGTTTC TCTGGGAACC AACAATTAGT AAACAGCCCA AAGCCCGCAT 1201 GACTGGTCAT CAAAAGCTCG TAAACCATGT CTACTTCTCT CCTGACGGGC AGTGGCTGGC 1261 AAGTGCCTCC TTTGACAAAT CTGTCAAGTT ATGGAATGGT ATTACAGGCA AATTTGTTGC 1321 AGCTTTCAGA GGGCATGTTG CAGATGTCTA CCAGATCAGC TGGTCTGCTG ACAGTAGGCT 1381 TCTATTGAGT GGAAGCAAGG ATTCCACCCT AAAGGTCTGG GATATTCGAA CACGCAAGTT 1441 GAAACAGGAT TTGCCAGGGC ACGCAGATGA GGTGTACGCT GTGGATTGGA GCCCTGACGG 1501 CGAGAAGGTT GCATCTGGAG GCAAGGACAG GGTCCTCAAG CTATGGATGA ACTAGTTCCC 1561 TTAGAGTTAA GGTACTTAGC TAGTAGCTTC TTGTCATGGT GGCTCTCTCT TGTTCTTGGT 1621 GAGAGATTTT GTAGGGTTGG GTTGGCATTT CTTGTTTTTA TTTTGCAACC AAAGGCTTGA 1681 GGGTTTATAG CTGGTTTTTT TTAGATAATG GAATATAATA TTCCGGTTTT TGTTCAAAAA 1741 GAACTACAGC CAATTATTAC AAAGATCCAC TCCAGAAGAG AGTGTAGTTT AAGACAAGTT 1801 GAACACACCA AATAAGAGAA GAGATAACCC Genomic Template: file=OSchr10, strand=-, from=337318, to=327527, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 337019 336743 ( 277 n); cDNA 1 277 ( 277 n); score: 0.996 Intron 1 336742 336114 ( 629 n); Pd: 0.970 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 336113 336032 ( 82 n); cDNA 278 359 ( 82 n); score: 1.000 Intron 2 336031 335915 ( 117 n); Pd: 0.981 (s: 1.00), Pa: 0.508 (s: 1.00) Exon 3 335914 335825 ( 90 n); cDNA 360 449 ( 90 n); score: 0.989 Intron 3 335824 335591 ( 234 n); Pd: 0.999 (s: 0.98), Pa: 0.993 (s: 1.00) Exon 4 335590 335465 ( 126 n); cDNA 450 575 ( 126 n); score: 1.000 Intron 4 335464 334803 ( 662 n); Pd: 0.941 (s: 1.00), Pa: 0.936 (s: 1.00) Exon 5 334802 334675 ( 128 n); cDNA 576 703 ( 128 n); score: 1.000 Intron 5 334674 334376 ( 299 n); Pd: 0.966 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 6 334375 334176 ( 200 n); cDNA 704 903 ( 200 n); score: 1.000 Intron 6 334175 332682 (1494 n); Pd: 0.962 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 7 332681 332618 ( 64 n); cDNA 904 967 ( 64 n); score: 1.000 Intron 7 332617 331118 (1500 n); Pd: 0.903 (s: 1.00), Pa: 0.849 (s: 1.00) Exon 8 331117 331007 ( 111 n); cDNA 968 1078 ( 111 n); score: 1.000 Intron 8 331006 330907 ( 100 n); Pd: 0.993 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 9 330906 330769 ( 138 n); cDNA 1079 1216 ( 138 n); score: 1.000 Intron 9 330768 328949 (1820 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 10 328948 328806 ( 143 n); cDNA 1217 1359 ( 143 n); score: 1.000 Intron 10 328805 328732 ( 74 n); Pd: 0.999 (s: 1.00), Pa: 0.915 (s: 1.00) Exon 11 328731 328677 ( 55 n); cDNA 1360 1414 ( 55 n); score: 1.000 Intron 11 328676 328335 ( 342 n); Pd: 0.998 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 12 328334 328278 ( 57 n); cDNA 1415 1471 ( 57 n); score: 1.000 Intron 12 328277 328186 ( 92 n); Pd: 0.996 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 13 328185 327827 ( 359 n); cDNA 1472 1830 ( 359 n); score: 1.000 MATCH OSchr10-v3- 37991726+ 0.999 1830 1.000 C PGS_OSchr10-v3-_37991726+ (337019 336743,336113 336032,335914 335825,335590 335465,334802 334675,334375 334176,332681 332618,331117 331007,330906 330769,328948 328806,328731 328677,328334 328278,328185 327827) Alignment (genomic DNA sequence = upper lines): TGGGGTGTGG CGTGTTGTGT TGTTGCCTCC GCCTCCGCCG CCGGCCGCTC GAGCCTCCTC 336960 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGGTGTGG CGTGTTGTGT TGTTGCCTCC GCCTCCGCCG CCGGCCGCTC GAGCCTCCTC 60 CTCTCCCGCC AGCCGCCGCC GCCGCCGCCG CTGCTTGCTT GCGATTTTTC AGATGGAGAG 336900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCCCGCC AGCCGCCGCC GCCGCCGCCG CTGCTTGCTT GCGATTTTTC AGATGGAGAG 120 CCCGAATCAG AACCAGCAGC AGGAGAGCAG CAGCGGAAGC AGCGTGATGT GCCAGCTGGT 336840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCGAATCAG AACCAGCAGC AGGAGAGCAG CAGCGGAAGC AGCGTGATGT GCCAGCTGGT 180 CAGTCCCGAA GGAGACCACC TTGGCGCCGC CCTCTACTTG CCTCACAACG TCGGCCCGCC 336780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCCCGAA GGAGACCACC TTGGCGCCGC CCTCTACTTG CCTCACAACG TCGGCCCGCC 240 GCAGCTGCAG GAGATCGTCA ACCATCTTCT CCACAACGTA CCACTATCTC TTCCTCCTTA 336720 |||||||||| |||||||||| |||||||||| ||||||| GCAGCTGCAG GAGATCGTCA ACCATCTTCT CCACAAC... .......... .......... 277 CTCTTCTTCT TCTTGCCTGC CTGCTTGCCT GCCTGATACC TTTTTTTTTT AATTTCATAT 336660 .......... .......... .......... .......... .......... .......... 277 // intron part 336659 336180 (480 n) not shown // //........ .......... .......... .......... .......... ........// CTCCCATTTG GCAGTTGTCC TGCATACTTA CTTGTGTGAC CTCATCACTC TAAACATTTA 336120 .......... .......... .......... .......... .......... .......... 277 CTTTAGGAGG ACAAGCTGCC ATATGCATTC TACATCGGAG ATGAAGAACT CTCTGTCCAG 336060 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GAGG ACAAGCTGCC ATATGCATTC TACATCGGAG ATGAAGAACT CTCTGTCCAG 331 CTTGGTGCTT ACATGCAGCA AAAGAATGGT GAGACTCCAC TCACAAGTTC ATCCTACATT 336000 |||||||||| |||||||||| |||||||| CTTGGTGCTT ACATGCAGCA AAAGAATG.. .......... .......... .......... 359 TCTTTTCGTC GATTAAGAAA ATTAAAACAA ACTAGGTGTT GCATCTCATT TCTGATTTCT 335940 .......... .......... .......... .......... .......... .......... 359 ATCTTTTGAT TTTTGTTAAA TGAAGCAAAT GTTGAGGTTA CCCTGCGCAT AGTATATCAA 335880 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....CAAAT GTTGAGGTTA CCCTGCGCAT AGTATATCAA 394 CCGCAGGCAA TTTTCCGTAT CAGGCCAGTC AACCGATGCT CTGCTACAAT TGCTGGTATG 335820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||| CCGCAGGCAA TTTTCCGTAT CAGGCCAGTC AACCGATGCT CTGCTACAAT TACTG..... 449 TATACCTTGG ATTACGTTCA TTTCATTGTT TTCTTTTTCC ATTACAATTT TAGGACTCTT 335760 .......... .......... .......... .......... .......... .......... 449 TTATTTGACA TGTTCTCATA TTGCTGGGAT TACAATGGGA ATATCATCGG ACAGACAAAC 335700 .......... .......... .......... .......... .......... .......... 449 CCTTTGCATC CTTGTTTTAT TTGTCATTGA CAGCACCAGT ACCAGCCTCA ATTATGTCGA 335640 .......... .......... .......... .......... .......... .......... 449 TTTTGAGCTT TCTTATACCA CTGCGAATGA TGTAATTTAT CATCTGCAGG CCATACAGAA 335580 | |||||||||| .......... .......... .......... .......... .........G CCATACAGAA 460 GCTGTACTAG CAGTTTCCTT CAGTCCTGAT GGAAGATGTT TGGCTAGTGG TTCTGGTGAT 335520 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTACTAG CAGTTTCCTT CAGTCCTGAT GGAAGATGTT TGGCTAGTGG TTCTGGTGAT 520 ACCACTGTTA GGTTTTGGGA TCTGAGCACA CAGACCCCAT TGTTCACATG CAAAGGTGAA 335460 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ACCACTGTTA GGTTTTGGGA TCTGAGCACA CAGACCCCAT TGTTCACATG CAAAG..... 575 TCTTAGCATT CTTGCATACA GATAATTTCA AGTCATTTTT CTCATACCTT AAATAAGTCG 335400 .......... .......... .......... .......... .......... .......... 575 // intron part 335399 334920 (480 n) not shown // //........ .......... .......... .......... .......... ........// AATTTTTTGG TACTCTTAGT CTCGTTGACA GTTCCATTTG CATATCGGTA TATCCAATGT 334860 .......... .......... .......... .......... .......... .......... 575 TTTTGAGGGT GATACCATTA ATATTTGAAA GTTATCAAAT AACACCGCAT CTTCCAGGAC 334800 ||| .......... .......... .......... .......... .......... .......GAC 578 ACAAAAACTG GGTCCTCTGC ATTGCATGGT CGCCTGATGG GAATCATCTT GTTAGTGGAA 334740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAAACTG GGTCCTCTGC ATTGCATGGT CGCCTGATGG GAATCATCTT GTTAGTGGAA 638 GCAAGTCAGG GGAACTTATA TTATGGGACC CGAAAACAGG CAAGCAATTG GGGACTCCAC 334680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGTCAGG GGAACTTATA TTATGGGACC CGAAAACAGG CAAGCAATTG GGGACTCCAC 698 TTACGGTAAG ATTATGACAT CTTTGTCTTT CAACCTGTAG TTTTTGTAGA AGTATGAAAT 334620 ||||| TTACG..... .......... .......... .......... .......... .......... 703 AAGAATTATT CAGTTGCATA TTTGCAGACC TAACTGCCCT ATGTGTCAAT TCATGTGAAC 334560 .......... .......... .......... .......... .......... .......... 703 // intron part 334559 334440 (120 n) not shown // //........ .......... .......... .......... .......... ........// ATATTGCAGA AGTTTCTTTT TTCTTGCCAT GCAGTACTCA TTGATCATTG CCTTTACTCA 334380 .......... .......... .......... .......... .......... .......... 703 TTAGGGGCAT AGGAAGTGGA TTACTGCTGT ATCTTGGGAG CCAGTTCATT TGCAATCTCC 334320 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GGGCAT AGGAAGTGGA TTACTGCTGT ATCTTGGGAG CCAGTTCATT TGCAATCTCC 759 TTGCCGCCGT TTTGTAAGTA CAAGTAAGGA TGGTGATGCA CGTATTTGGG ATATGACCAC 334260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCGCCGT TTTGTAAGTA CAAGTAAGGA TGGTGATGCA CGTATTTGGG ATATGACCAC 819 AAGGAAGTGT GTCATTGCCC TTACAGGTCA CACTAATTCA GTGACTTGTG TGAAGTGGGG 334200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAGTGT GTCATTGCCC TTACAGGTCA CACTAATTCA GTGACTTGTG TGAAGTGGGG 879 TGGAGATGGT TTGATTTACA CTGGGTAAGA CTATTACACC TTCTGTTTCT ATTATAAGGC 334140 |||||||||| |||||||||| |||| TGGAGATGGT TTGATTTACA CTGG...... .......... .......... .......... 903 GTATTTTGTT TCGTTAAGAC AAGGGTTTGA CTAACAATTT CTTTACAAGT AATATATTAT 334080 .......... .......... .......... .......... .......... .......... 903 // intron part 334079 332760 (1320 n) not shown // //........ .......... .......... .......... .......... ........// GTACAAAATG CTGTATTTTA CAGATACAGT TCTTAAAATG CTATGTACAA TTCTAAAACA 332700 .......... .......... .......... .......... .......... .......... 903 AATGTATGTG TACTGCAGTT CTGAAGATTG TTCAATCAAA GTGTGGGAAA CTTCTCAGGG 332640 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........TT CTGAAGATTG TTCAATCAAA GTGTGGGAAA CTTCTCAGGG 945 AAAATTGGTC AAAACACTGC AGGTAATGTA CCAGCATTTC AGTGGACATT CAAAGATTTA 332580 |||||||||| |||||||||| || AAAATTGGTC AAAACACTGC AG........ .......... .......... .......... 967 TGCAAACTTT TATGCTCCCA AGTTGGCTTT GCTAGTATTG AATTATGAGC AAAATAGCAA 332520 .......... .......... .......... .......... .......... .......... 967 // intron part 332519 331200 (1320 n) not shown // //........ .......... .......... .......... .......... ........// CCTTGCTTTC AAGTCAGCTA TTCTATGCTA GTTGTCACTG TCATCTTGTT AAAGTAGTTA 331140 .......... .......... .......... .......... .......... .......... 967 CACACTTACA CTGCATATTC AGGGTCATGG TCACTGGGTC AATTCACTTG CTTTGAGCAC 331080 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GGTCATGG TCACTGGGTC AATTCACTTG CTTTGAGCAC 1005 CGAGTATGTT TTGCGCACAG GGGCATATGA CCATACTGGC AAGACATATT CAACAGCAGA 331020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGTATGTT TTGCGCACAG GGGCATATGA CCATACTGGC AAGACATATT CAACAGCAGA 1065 GGAAATGAAG GAGGTATGAT GTGATCATAA ATTAGTGTTA GAACTGACTC TTAATATTTT 330960 |||||||||| ||| GGAAATGAAG GAG....... .......... .......... .......... .......... 1078 CATTTGTTGC TTGCTGAAAT GAATTTTTTC ACCTGAGAAC TTTGGATATC CAGGCAGCTC 330900 ||||||| .......... .......... .......... .......... .......... ...GCAGCTC 1085 TTGCGAGATA CAAGAAGATG AGGGGCAATG CACCTGAGAG ACTAGTTTCT GGTTCTGATG 330840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCGAGATA CAAGAAGATG AGGGGCAATG CACCTGAGAG ACTAGTTTCT GGTTCTGATG 1145 ATTTTACGAT GTTTCTCTGG GAACCAACAA TTAGTAAACA GCCCAAAGCC CGCATGACTG 330780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTACGAT GTTTCTCTGG GAACCAACAA TTAGTAAACA GCCCAAAGCC CGCATGACTG 1205 GTCATCAAAA GGTATATTGT CCTGACAGCT CCATGAAATG TTCTTGCATT TGTATCATTG 330720 |||||||||| | GTCATCAAAA G......... .......... .......... .......... .......... 1216 TATGTACATT TTGACTTGTT TATGCATTCA GTTTTGTCTC ACTGAATACT GAGAAAAGAT 330660 .......... .......... .......... .......... .......... .......... 1216 // intron part 330659 329040 (1620 n) not shown // //........ .......... .......... .......... .......... ........// AAATATTATT GCTTTTTTTA CCAATGCAGG GTAAATTTTT TTATTTAAGT GTGCTTGGAA 328980 .......... .......... .......... .......... .......... .......... 1216 ATGATTTTGT CATTTGCTTT TCTTTGTGCA GCTCGTAAAC CATGTCTACT TCTCTCCTGA 328920 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CTCGTAAAC CATGTCTACT TCTCTCCTGA 1245 CGGGCAGTGG CTGGCAAGTG CCTCCTTTGA CAAATCTGTC AAGTTATGGA ATGGTATTAC 328860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGCAGTGG CTGGCAAGTG CCTCCTTTGA CAAATCTGTC AAGTTATGGA ATGGTATTAC 1305 AGGCAAATTT GTTGCAGCTT TCAGAGGGCA TGTTGCAGAT GTCTACCAGA TCAGGTCGGT 328800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AGGCAAATTT GTTGCAGCTT TCAGAGGGCA TGTTGCAGAT GTCTACCAGA TCAG...... 1359 TTTTCTATCT TGCTGTTTCC ATTGTATGTA CATGCCGCAA TGCCTAATAT CATCATTTCT 328740 .......... .......... .......... .......... .......... .......... 1359 GTCCATAGCT GGTCTGCTGA CAGTAGGCTT CTATTGAGTG GAAGCAAGGA TTCCACCCTA 328680 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........CT GGTCTGCTGA CAGTAGGCTT CTATTGAGTG GAAGCAAGGA TTCCACCCTA 1411 AAGGTATCTA TCTCTGTCTC CGCTTAGTTC TCTGTCTTTT ACCTAACTGG TCACCGACAT 328620 ||| AAG....... .......... .......... .......... .......... .......... 1414 GCCATTCAGT CTGTATGTTG TCAATCTGGC ACTGGAATTC ATTATATCAG AATACTTGTC 328560 .......... .......... .......... .......... .......... .......... 1414 // intron part 328559 328440 (120 n) not shown // //........ .......... .......... .......... .......... ........// TTAATTATGT TTCTATTAAC TTGGCTTGTA AAGTCCATTA CTTGCATAGC ATGGACCATG 328380 .......... .......... .......... .......... .......... .......... 1414 GAACTGATAC GTTATGCTCG GTCTCTATTT GTTGGTACGA TTCAGGTCTG GGATATTCGA 328320 ||||| |||||||||| .......... .......... .......... .......... .....GTCTG GGATATTCGA 1429 ACACGCAAGT TGAAACAGGA TTTGCCAGGG CACGCAGATG AGGTACATGC ATGCATATTT 328260 |||||||||| |||||||||| |||||||||| |||||||||| || ACACGCAAGT TGAAACAGGA TTTGCCAGGG CACGCAGATG AG........ .......... 1471 TGGAACAATA AAAATCTGAA TTGAAATTAT TATAGTGTAG TAACAAAGAT TATGTATATA 328200 .......... .......... .......... .......... .......... .......... 1471 TATATAAATG TAAGGTGTAC GCTGTGGATT GGAGCCCTGA CGGCGAGAAG GTTGCATCTG 328140 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTGTAC GCTGTGGATT GGAGCCCTGA CGGCGAGAAG GTTGCATCTG 1517 GAGGCAAGGA CAGGGTCCTC AAGCTATGGA TGAACTAGTT CCCTTAGAGT TAAGGTACTT 328080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCAAGGA CAGGGTCCTC AAGCTATGGA TGAACTAGTT CCCTTAGAGT TAAGGTACTT 1577 AGCTAGTAGC TTCTTGTCAT GGTGGCTCTC TCTTGTTCTT GGTGAGAGAT TTTGTAGGGT 328020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAGTAGC TTCTTGTCAT GGTGGCTCTC TCTTGTTCTT GGTGAGAGAT TTTGTAGGGT 1637 TGGGTTGGCA TTTCTTGTTT TTATTTTGCA ACCAAAGGCT TGAGGGTTTA TAGCTGGTTT 327960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTTGGCA TTTCTTGTTT TTATTTTGCA ACCAAAGGCT TGAGGGTTTA TAGCTGGTTT 1697 TTTTTAGATA ATGGAATATA ATATTCCGGT TTTTGTTCAA AAAGAACTAC AGCCAATTAT 327900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTAGATA ATGGAATATA ATATTCCGGT TTTTGTTCAA AAAGAACTAC AGCCAATTAT 1757 TACAAAGATC CACTCCAGAA GAGAGTGTAG TTTAAGACAA GTTGAACACA CCAAATAAGA 327840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAAGATC CACTCCAGAA GAGAGTGTAG TTTAAGACAA GTTGAACACA CCAAATAAGA 1817 GAAGAGATAA CCC 327827 |||||||||| ||| GAAGAGATAA CCC 1830 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32986474|dbj|AK101265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032L03, full insert sequence 1 GGGGAACTTA TATTATGGGA CCCGAAAACA GGCAAGCAAT TGGGGACTCC ACTTACGGGG 61 CATAGGAAGT GGATTACTGC TGTATCTTGG GAGCCAGTTC ATTTGCAATC TCCTTGCCGC 121 CGTTTTGTAA GTACAAGTAA GGATGGTGAT GCACGTATTT GGGATATGAC CACAAGGAAG 181 TGTGTCATTG CCCTTACAGG TCACACTAAT TCAGTGACTT GTGTGAAGTG GGGTGGAGAT 241 GGTTTGATTT ACACTGGTTC TGAAGATTGT TCAATCAAAG TGTGGGAAAC TTCTCAGGGA 301 AAATTGGTCA AAACACTGCA GGGTCATGGT CACTGGGTCA ATTCACTTGC TTTGAGCACC 361 GAGTATGTTT TGCGCACAGG GGCATATGAC CATACTGGCA AGACATATTC AACAGCAGAG 421 GAAATGAAGG AGGCAGCTCT TGCGAGATAC AAGAAGATGA GGGGCAATGC ACCTGAGAGA 481 CTAGTTTCTG GTTCTGATGA TTTTACGATG TTTCTCTGGG AACCAACAAT TAGTAAACAG 541 CCCAAAGCCC GCATGACTGG TCATCAAAAG CTCGTAAACC ATGTCTACTT CTCTCCTGAC 601 GGGCAGTGGC TGGCAAGTGC CTCCTTTGAC AAATCTGTCA AGTTATGGAA TGGTATTACA 661 GGCAAATTTG TTGCAGCTTT CAGAGGGCAT GTTGCAGATG TCTACCAGAT CAGCTGGTCT 721 GCTGACAGTA GGCTTCTATT GAGTGGAAGC AAGGATTCCA CCCTAAAGGT CTGGGATATT 781 CGAACACGCA AGTTGAAACA GGATTTGCCA GGGCACGCAG ATGAGGTGTA CGCTGTGGAT 841 TGGAGCCCTG ACGGCGAGAA GGTTGCATCT GGAGGCAAGG ACAGGGTCCT CAAGCTATGG 901 ATGAACTAGT TCCCTTAGAG TTAAGGTACT TAGCTAGTAG CTTCTTGTCA TGGTGGCTCT 961 CTCTTGTTCT TGGTGAGAGA TTTTGTAGGG TTGGGTTGGC ATTTCTTGTT TTTATTTTGC 1021 AACCAAAGGC TTGAGGGTTT ATAGCTGGTT TTTTTTAGAT AATGGAATAT AATATTCCGG 1081 TTTTTGTTC Genomic Template: file=OSchr10, strand=-, from=335031, to=327622, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 334731 334675 ( 57 n); cDNA 1 57 ( 57 n); score: 1.000 Intron 1 334674 334376 ( 299 n); Pd: 0.966 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 2 334375 334176 ( 200 n); cDNA 58 257 ( 200 n); score: 1.000 Intron 2 334175 332682 (1494 n); Pd: 0.962 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 3 332681 332618 ( 64 n); cDNA 258 321 ( 64 n); score: 1.000 Intron 3 332617 331118 (1500 n); Pd: 0.903 (s: 1.00), Pa: 0.849 (s: 1.00) Exon 4 331117 331007 ( 111 n); cDNA 322 432 ( 111 n); score: 1.000 Intron 4 331006 330907 ( 100 n); Pd: 0.993 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 330906 330769 ( 138 n); cDNA 433 570 ( 138 n); score: 1.000 Intron 5 330768 328949 (1820 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 6 328948 328806 ( 143 n); cDNA 571 713 ( 143 n); score: 1.000 Intron 6 328805 328732 ( 74 n); Pd: 0.999 (s: 1.00), Pa: 0.915 (s: 1.00) Exon 7 328731 328677 ( 55 n); cDNA 714 768 ( 55 n); score: 1.000 Intron 7 328676 328335 ( 342 n); Pd: 0.998 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 8 328334 328278 ( 57 n); cDNA 769 825 ( 57 n); score: 1.000 Intron 8 328277 328186 ( 92 n); Pd: 0.996 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 9 328185 327922 ( 264 n); cDNA 826 1089 ( 264 n); score: 1.000 MATCH OSchr10-v3- 32986474+ 1.000 1089 1.000 C PGS_OSchr10-v3-_32986474+ (334731 334675,334375 334176,332681 332618,331117 331007,330906 330769,328948 328806,328731 328677,328334 328278,328185 327922) Alignment (genomic DNA sequence = upper lines): GGGGAACTTA TATTATGGGA CCCGAAAACA GGCAAGCAAT TGGGGACTCC ACTTACGGTA 334672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGGGAACTTA TATTATGGGA CCCGAAAACA GGCAAGCAAT TGGGGACTCC ACTTACG... 57 AGATTATGAC ATCTTTGTCT TTCAACCTGT AGTTTTTGTA GAAGTATGAA ATAAGAATTA 334612 .......... .......... .......... .......... .......... .......... 57 // intron part 334611 334492 (120 n) not shown // //........ .......... .......... .......... .......... ........// ATGGATTCAC ATACACTTAA TGTTGGAAAT AGTATATGGA GTTGTACTTT ATATATTGCA 334432 .......... .......... .......... .......... .......... .......... 57 GAAGTTTCTT TTTTCTTGCC ATGCAGTACT CATTGATCAT TGCCTTTACT CATTAGGGGC 334372 |||| .......... .......... .......... .......... .......... ......GGGC 61 ATAGGAAGTG GATTACTGCT GTATCTTGGG AGCCAGTTCA TTTGCAATCT CCTTGCCGCC 334312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGGAAGTG GATTACTGCT GTATCTTGGG AGCCAGTTCA TTTGCAATCT CCTTGCCGCC 121 GTTTTGTAAG TACAAGTAAG GATGGTGATG CACGTATTTG GGATATGACC ACAAGGAAGT 334252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTGTAAG TACAAGTAAG GATGGTGATG CACGTATTTG GGATATGACC ACAAGGAAGT 181 GTGTCATTGC CCTTACAGGT CACACTAATT CAGTGACTTG TGTGAAGTGG GGTGGAGATG 334192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTCATTGC CCTTACAGGT CACACTAATT CAGTGACTTG TGTGAAGTGG GGTGGAGATG 241 GTTTGATTTA CACTGGGTAA GACTATTACA CCTTCTGTTT CTATTATAAG GCGTATTTTG 334132 |||||||||| |||||| GTTTGATTTA CACTGG.... .......... .......... .......... .......... 257 TTTCGTTAAG ACAAGGGTTT GACTAACAAT TTCTTTACAA GTAATATATT ATTTATGCGT 334072 .......... .......... .......... .......... .......... .......... 257 // intron part 334071 332752 (1320 n) not shown // //........ .......... .......... .......... .......... ........// TGCTGTATTT TACAGATACA GTTCTTAAAA TGCTATGTAC AATTCTAAAA CAAATGTATG 332692 .......... .......... .......... .......... .......... .......... 257 TGTACTGCAG TTCTGAAGAT TGTTCAATCA AAGTGTGGGA AACTTCTCAG GGAAAATTGG 332632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... TTCTGAAGAT TGTTCAATCA AAGTGTGGGA AACTTCTCAG GGAAAATTGG 307 TCAAAACACT GCAGGTAATG TACCAGCATT TCAGTGGACA TTCAAAGATT TATGCAAACT 332572 |||||||||| |||| TCAAAACACT GCAG...... .......... .......... .......... .......... 321 TTTATGCTCC CAAGTTGGCT TTGCTAGTAT TGAATTATGA GCAAAATAGC AAATATCACA 332512 .......... .......... .......... .......... .......... .......... 321 // intron part 332511 331192 (1320 n) not shown // //........ .......... .......... .......... .......... ........// TCAAGTCAGC TATTCTATGC TAGTTGTCAC TGTCATCTTG TTAAAGTAGT TACACACTTA 331132 .......... .......... .......... .......... .......... .......... 321 CACTGCATAT TCAGGGTCAT GGTCACTGGG TCAATTCACT TGCTTTGAGC ACCGAGTATG 331072 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GGTCAT GGTCACTGGG TCAATTCACT TGCTTTGAGC ACCGAGTATG 367 TTTTGCGCAC AGGGGCATAT GACCATACTG GCAAGACATA TTCAACAGCA GAGGAAATGA 331012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGCGCAC AGGGGCATAT GACCATACTG GCAAGACATA TTCAACAGCA GAGGAAATGA 427 AGGAGGTATG ATGTGATCAT AAATTAGTGT TAGAACTGAC TCTTAATATT TTCATTTGTT 330952 ||||| AGGAG..... .......... .......... .......... .......... .......... 432 GCTTGCTGAA ATGAATTTTT TCACCTGAGA ACTTTGGATA TCCAGGCAGC TCTTGCGAGA 330892 ||||| |||||||||| .......... .......... .......... .......... .....GCAGC TCTTGCGAGA 447 TACAAGAAGA TGAGGGGCAA TGCACCTGAG AGACTAGTTT CTGGTTCTGA TGATTTTACG 330832 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAGAAGA TGAGGGGCAA TGCACCTGAG AGACTAGTTT CTGGTTCTGA TGATTTTACG 507 ATGTTTCTCT GGGAACCAAC AATTAGTAAA CAGCCCAAAG CCCGCATGAC TGGTCATCAA 330772 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTTCTCT GGGAACCAAC AATTAGTAAA CAGCCCAAAG CCCGCATGAC TGGTCATCAA 567 AAGGTATATT GTCCTGACAG CTCCATGAAA TGTTCTTGCA TTTGTATCAT TGTATGTACA 330712 ||| AAG....... .......... .......... .......... .......... .......... 570 TTTTGACTTG TTTATGCATT CAGTTTTGTC TCACTGAATA CTGAGAAAAG ATTGAAAATT 330652 .......... .......... .......... .......... .......... .......... 570 // intron part 330651 329032 (1620 n) not shown // //........ .......... .......... .......... .......... ........// TTGCTTTTTT TACCAATGCA GGGTAAATTT TTTTATTTAA GTGTGCTTGG AAATGATTTT 328972 .......... .......... .......... .......... .......... .......... 570 GTCATTTGCT TTTCTTTGTG CAGCTCGTAA ACCATGTCTA CTTCTCTCCT GACGGGCAGT 328912 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...CTCGTAA ACCATGTCTA CTTCTCTCCT GACGGGCAGT 607 GGCTGGCAAG TGCCTCCTTT GACAAATCTG TCAAGTTATG GAATGGTATT ACAGGCAAAT 328852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGGCAAG TGCCTCCTTT GACAAATCTG TCAAGTTATG GAATGGTATT ACAGGCAAAT 667 TTGTTGCAGC TTTCAGAGGG CATGTTGCAG ATGTCTACCA GATCAGGTCG GTTTTTCTAT 328792 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTGTTGCAGC TTTCAGAGGG CATGTTGCAG ATGTCTACCA GATCAG.... .......... 713 CTTGCTGTTT CCATTGTATG TACATGCCGC AATGCCTAAT ATCATCATTT CTGTCCATAG 328732 .......... .......... .......... .......... .......... .......... 713 CTGGTCTGCT GACAGTAGGC TTCTATTGAG TGGAAGCAAG GATTCCACCC TAAAGGTATC 328672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CTGGTCTGCT GACAGTAGGC TTCTATTGAG TGGAAGCAAG GATTCCACCC TAAAG..... 768 TATCTCTGTC TCCGCTTAGT TCTCTGTCTT TTACCTAACT GGTCACCGAC ATGCCATTCA 328612 .......... .......... .......... .......... .......... .......... 768 // intron part 328611 328432 (180 n) not shown // //........ .......... .......... .......... .......... ........// GTTTCTATTA ACTTGGCTTG TAAAGTCCAT TACTTGCATA GCATGGACCA TGGAACTGAT 328372 .......... .......... .......... .......... .......... .......... 768 ACGTTATGCT CGGTCTCTAT TTGTTGGTAC GATTCAGGTC TGGGATATTC GAACACGCAA 328312 ||| |||||||||| |||||||||| .......... .......... .......... .......GTC TGGGATATTC GAACACGCAA 791 GTTGAAACAG GATTTGCCAG GGCACGCAGA TGAGGTACAT GCATGCATAT TTTGGAACAA 328252 |||||||||| |||||||||| |||||||||| |||| GTTGAAACAG GATTTGCCAG GGCACGCAGA TGAG...... .......... .......... 825 TAAAAATCTG AATTGAAATT ATTATAGTGT AGTAACAAAG ATTATGTATA TATATATAAA 328192 .......... .......... .......... .......... .......... .......... 825 TGTAAGGTGT ACGCTGTGGA TTGGAGCCCT GACGGCGAGA AGGTTGCATC TGGAGGCAAG 328132 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTGT ACGCTGTGGA TTGGAGCCCT GACGGCGAGA AGGTTGCATC TGGAGGCAAG 879 GACAGGGTCC TCAAGCTATG GATGAACTAG TTCCCTTAGA GTTAAGGTAC TTAGCTAGTA 328072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAGGGTCC TCAAGCTATG GATGAACTAG TTCCCTTAGA GTTAAGGTAC TTAGCTAGTA 939 GCTTCTTGTC ATGGTGGCTC TCTCTTGTTC TTGGTGAGAG ATTTTGTAGG GTTGGGTTGG 328012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCTTGTC ATGGTGGCTC TCTCTTGTTC TTGGTGAGAG ATTTTGTAGG GTTGGGTTGG 999 CATTTCTTGT TTTTATTTTG CAACCAAAGG CTTGAGGGTT TATAGCTGGT TTTTTTTAGA 327952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTCTTGT TTTTATTTTG CAACCAAAGG CTTGAGGGTT TATAGCTGGT TTTTTTTAGA 1059 TAATGGAATA TAATATTCCG GTTTTTGTTC 327922 |||||||||| |||||||||| |||||||||| TAATGGAATA TAATATTCCG GTTTTTGTTC 1089 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32982638|dbj|AK072615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C11, full insert sequence 1 GGTGCGAAAA CCACCCCACA AAAATATCGT CTCCTCCGCG TGTGCGGAAA CCACCCCGCA 61 TAATTTCCAA AATACCCCCG AGCCCTAATC CCCTCTTCCC CTTCCTCCTC GCTACGGCGG 121 CGGCGGCGAC GGCGACCGCC GGAGCCGACC CGATCCCACC CGAGTCCTTC CCTGTGCGCG 181 CACCGCTCCT TCCTCTACTT CCCGACCGCC GCTTCCTCCC CTGTTGGTGT GGGCGCGGGC 241 GGCTAGAGGA ATCGAATTGA AGATTACGGA ACAACTCTGG AGGCATGGCA GAGGGGTCCC 301 TAGTTGTTGC CATTTGCCAG TATGGTGGAG AGTTCACTTC TGGCCCCAAT GGCAATTTGA 361 TCTACAAAGG AGGAGAAGCA CACGCTGTTG ACGTCACACG AGAGATGTCA CTAGATAACT 421 TCAAGGATGA GGTGTCCAAG GTGTTTCATG TTGAGGTTTC AGATGTGTCA CTGAAATACT 481 TTCTCCCGAA CAATAACAGA ACTCTTATCA CAATATCATG TGATCGAGAT TTGCAACGGA 541 TGGTCGATTT TACTGCTAGT TCTGCACAAG TGGATGTTTT TTTGATAAGT AGAGTGGAGA 601 ACAGGAGTAT AACTCAGACT GGAGCCTCCA CTGCTAAACC TGGGTCTAAT GCACGAGGTG 661 ATAAAAGGAA AACGCCAACT TCCAAAAATA AGGCATCAAA AAACAAGAAG AAGACTCCCA 721 GTGCTACTGG CACTGCAGTT CAAGCTAATG CCAATAATGT GAAACAGCCA AGACAAGTTG 781 TTACCGAAAA TGATGACAAC AGGGTTTTTC CACTGGAATT TGGGAGTGAT ATTGCCTTTG 841 CCAATACAGC TGGAGCTGGT TCCACAGCTC CAGACATCTT GAATCAGCAA AAGCTTGCTC 901 TTGTTGATAA CACAGCGAGG GAATCAGTTG GGCTTTTTGA TGATTCAGTC AATCCATATG 961 TTGGCTCTGA GATCACAACA GAACCTACAC AGGGTCTTAA CAATCCTATT GTGTTTTGGG 1021 ATGATATTAT CAAAGGTGTC GGTCAAGAAT TTGATAATGT GAAGGATTTT CGTGCTCAGT 1081 TATGCAAGTA TGCTATTGGG AAAGGATTTG TTTATCGATT CATTAAAAAT GAAACCACAC 1141 GTGTCACTGT AAAATGTGTT GGTGAGGGTT GCACATGGCG GTTGCATGCA TCTGAATCAT 1201 CTCGGAACAA GAAATTTGTT ATCAAGAAAA TGACAGACGA GCATACATGT GGTGGAGGAA 1261 GTGGAGAGGG TCAGCGGCGA GCAACAAGAC AGTGGCTGAC TACTGTCATT AAGGAGAAGC 1321 TGCATGAGAA TCCATTGTTC AAGCCAAAGG ACCTTGTCAA GGAAATTTAT GAAGAATACG 1381 GAGTTATGCT GACCTATTCA CAGGTTTGGC GAGGTAGAGA AGTGGCACAG AAGGAGCTTT 1441 ATCATGCTAT CCGGGAGACA TATAGCCATT TGCCCTGGTA TTGTGAAAGG CTTTTGGAGA 1501 CCAATCCAGG TAGCATAGCT TTGTTGTCTC CGATGGTGGA TACAAAATTC CGCCGCTTCT 1561 TTGTTGCATT CCACGCTTCT TTGCATGGCT TCACAAATGG GTGTAGGCCT CTCATATTTC 1621 TTGACAAGGT TCCGCTTAAA GCGACTAATG AGTACAAGTT GCTGGTTGCT GCTGGAGTTG 1681 ATGCAGATGA TGGTGTCTTT CCAGTGGCAT TTAATGTGGT TGAAGAGGAA AATTATGAGA 1741 GTTGGGTTTG GTTCTTGATG CAGCTGAGGT ATGCTCTCCA GAATCACAAC TATCCTTACA 1801 ATGCTATGAC ATTTTTGTCC AGTGGACAAA AGGGATTGGA TGCTGCTGTT CCACAAGTGT 1861 TCGAAGAAAG TCACCACGCC TTCTGTTTGC ATCATATCAT GGAAGAATTC AAAGGAGAGC 1921 TGAGGAAGGG ACCGTGGTCA CAACAGATAA GAGATGGGAT GGTTGAGGAT TTCACTCGAG 1981 CAGCCCAAGC CTGCAGCATC GAGGATTTTA ACGCATCAAT TGAGAGCATA AGGAATATAT 2041 CCACTGAAGC TGCTGATTGG ATTATTGCAA GTAAGCCGGA GCATTGGTCA GATGCCATCT 2101 TCAGAGGCTG TCGTTATGAT CATTTCTCCT CGAACATTGT TGATGCTTTT AATAACTGGA 2161 TACCTACCAA GAAGGAAGGA TCAATAGTGC TGATGATAGA CTCTCTGAGA ATGAAAATAA 2221 TGGAGGTGAT AGAAGCAAGG CGCGAGTCTT GCAAGTCCTG GTCAGGGCCT TTAACTCCTT 2281 CCATGGAATT CAAAGTGCAG GATGAGATGT CCAAAGCTGG GAAGCTGACT GTGCTGTGCT 2341 CTTCTGAAAC CGTGTTTGAA GTCCGGGGCA GTGCAATTTA TGTTGTCAAC CTTGCAAATT 2401 GGGAATGCAC CTGTCGAAGG TGGCAACTTT CTGGCCTTCC TTGTATGCAT GCTGTTGCTG 2461 TGTTCAACAG GGTTGGGCGA TCTTTCTATG ACTACTGTTC AAAATTTTTC AGAATAGAGA 2521 GCTACCATTT GGCTTACTCA GGAGCAATAT TCCCAATTCC TGACATGGAT ACCGTTGATT 2581 TTAGTGCTGG GGCAAATTTG ATTCCACCTC CTAAGCCACG GACATCAGAT AAACCCAGAA 2641 GGAAGCGTTT TAACCCCAAC AAGATACCTA CTGTTGTACG GCTCTGTAGC AGGTGCAAGC 2701 AAGCAGGACA CAATAAGGCA ACCTGTGAAG CGATTTTGTA GACAATGGAA GTTCTGGATT 2761 ATCCAGTATG CGTAGAAGGG TGAAAGGTCT GAAGCTTTAA GTGGAGTAGC GCTGGTGAGA 2821 AGCCGTAGAT TTTGTTGGAT GGATGGAAGA ACGATGAGAT ATGATGAATG ATACCACCGT 2881 TTTGTAACTT AATATTATAT TATAAATGGG GGTGGAAAGA TGTAGTAATT TAAATGTCAA 2941 ATCTTAAGAA GAAGAGGAAT GAAGGATGAG CTTTGTTAGT AGATAGATTA TGGTTAGCGG 3001 TTTAGAAGTC ATAATAGGTA GCATGGCTGT TGAAAATGAT GATGATTCAA GTGTACCAGT 3061 CCATGATTTT AAACATTGTC TTTCTAGTCT TCTATTCAGT GTTAAGGATG GCTATCAACT 3121 AGTT Genomic Template: file=OSchr10, strand=-, from=346172, to=339367, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 345873 345612 ( 262 n); cDNA 1 262 ( 262 n); score: 0.996 Intron 1 345611 343826 (1786 n); Pd: 0.465 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 343825 343484 ( 342 n); cDNA 263 604 ( 342 n); score: 1.000 Intron 2 343483 343222 ( 262 n); Pd: 0.794 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 3 343221 343135 ( 87 n); cDNA 605 691 ( 87 n); score: 1.000 Intron 3 343134 343047 ( 88 n); Pd: 0.970 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 343046 342936 ( 111 n); cDNA 692 802 ( 111 n); score: 1.000 Intron 4 342935 342803 ( 133 n); Pd: 0.994 (s: 1.00), Pa: 0.499 (s: 1.00) Exon 5 342802 342686 ( 117 n); cDNA 803 919 ( 117 n); score: 1.000 Intron 5 342685 342599 ( 87 n); Pd: 0.999 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 6 342598 340740 (1859 n); cDNA 920 2778 (1859 n); score: 0.999 Intron 6 340739 340013 ( 727 n); Pd: 0.989 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 7 340012 339667 ( 346 n); cDNA 2779 3124 ( 346 n); score: 1.000 MATCH OSchr10-v3- 32982638+ 0.999 3124 1.000 C PGS_OSchr10-v3-_32982638+ (345873 345612,343825 343484,343221 343135,343046 342936,342802 342686,342598 340740,340012 339667) Alignment (genomic DNA sequence = upper lines): TGTGCGAAAA CCACCCCACA AAAATATCGT CTCCTCCGCG TGTGCGGAAA CCACCCCGCA 345814 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCGAAAA CCACCCCACA AAAATATCGT CTCCTCCGCG TGTGCGGAAA CCACCCCGCA 60 TAATTTCCAA AATACCCCCG AGCCCTAATC CCCTCTTCCC CTTCCTCCTC GCTACGGCGG 345754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATTTCCAA AATACCCCCG AGCCCTAATC CCCTCTTCCC CTTCCTCCTC GCTACGGCGG 120 CGGCGGCGAC GGCGACCGCC GGAGCCGACC CGATCCCACC CGAGTCCTTC CCTGTGCGCG 345694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCGGCGAC GGCGACCGCC GGAGCCGACC CGATCCCACC CGAGTCCTTC CCTGTGCGCG 180 CACCGCTCCT TCCTCTACTT CCCGACCGCC GCTTCCTCCC CTGTTGGTGT GGGCGCGGGC 345634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCGCTCCT TCCTCTACTT CCCGACCGCC GCTTCCTCCC CTGTTGGTGT GGGCGCGGGC 240 GGCTAGAGGA ATCGAATTGA AGGTATACGT CCTCTTCCTC CTCTGCGTCG TGACTTGGTG 345574 |||||||||| |||||||||| || GGCTAGAGGA ATCGAATTGA AG........ .......... .......... .......... 262 GATTGAAGGG CCGGCCACCT GCGTGTTGTA GATTGGGAAT CCGTCCACTT CTTTTTTCTC 345514 .......... .......... .......... .......... .......... .......... 262 // intron part 345513 343894 (1620 n) not shown // //........ .......... .......... .......... .......... ........// TACTACTTAA TTTCTTATTG TACTGTCCTG GATTACGCAT GCACATTGAT TTATTTCCTA 343834 .......... .......... .......... .......... .......... .......... 262 ACATGTAGAT TACGGAACAA CTCTGGAGGC ATGGCAGAGG GGTCCCTAGT TGTTGCCATT 343774 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AT TACGGAACAA CTCTGGAGGC ATGGCAGAGG GGTCCCTAGT TGTTGCCATT 314 TGCCAGTATG GTGGAGAGTT CACTTCTGGC CCCAATGGCA ATTTGATCTA CAAAGGAGGA 343714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAGTATG GTGGAGAGTT CACTTCTGGC CCCAATGGCA ATTTGATCTA CAAAGGAGGA 374 GAAGCACACG CTGTTGACGT CACACGAGAG ATGTCACTAG ATAACTTCAA GGATGAGGTG 343654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCACACG CTGTTGACGT CACACGAGAG ATGTCACTAG ATAACTTCAA GGATGAGGTG 434 TCCAAGGTGT TTCATGTTGA GGTTTCAGAT GTGTCACTGA AATACTTTCT CCCGAACAAT 343594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAGGTGT TTCATGTTGA GGTTTCAGAT GTGTCACTGA AATACTTTCT CCCGAACAAT 494 AACAGAACTC TTATCACAAT ATCATGTGAT CGAGATTTGC AACGGATGGT CGATTTTACT 343534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGAACTC TTATCACAAT ATCATGTGAT CGAGATTTGC AACGGATGGT CGATTTTACT 554 GCTAGTTCTG CACAAGTGGA TGTTTTTTTG ATAAGTAGAG TGGAGAACAG GTATTTCCTT 343474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAGTTCTG CACAAGTGGA TGTTTTTTTG ATAAGTAGAG TGGAGAACAG .......... 604 TTTTACCTTT TTGTGCAGCC TTTTGGAGTA ACTTTTGCAA GCCTACAGAA CCTTCGACAA 343414 .......... .......... .......... .......... .......... .......... 604 // intron part 343413 343294 (120 n) not shown // //........ .......... .......... .......... .......... ........// GTTTTGCAAA ATTTACTATT TTTTGAGTAA ATCATTCATG TTCTGTTTTG ATTAGTATGT 343234 .......... .......... .......... .......... .......... .......... 604 TTCTCTTGCT AGGAGTATAA CTCAGACTGG AGCCTCCACT GCTAAACCTG GGTCTAATGC 343174 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAGTATAA CTCAGACTGG AGCCTCCACT GCTAAACCTG GGTCTAATGC 652 ACGAGGTGAT AAAAGGAAAA CGCCAACTTC CAAAAATAAG TAGGTGCCAC TGTTCCAGTT 343114 |||||||||| |||||||||| |||||||||| ||||||||| ACGAGGTGAT AAAAGGAAAA CGCCAACTTC CAAAAATAA. .......... .......... 691 TTCTCTATCT GATGTTATTT ATAGCCCCGT GCTTTTCCAT GTTATATTGA ATACCATCTT 343054 .......... .......... .......... .......... .......... .......... 691 TCTCCAGGGC ATCAAAAAAC AAGAAGAAGA CTCCCAGTGC TACTGGCACT GCAGTTCAAG 342994 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GGC ATCAAAAAAC AAGAAGAAGA CTCCCAGTGC TACTGGCACT GCAGTTCAAG 744 CTAATGCCAA TAATGTGAAA CAGCCAAGAC AAGTTGTTAC CGAAAATGAT GACAACAGGT 342934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTAATGCCAA TAATGTGAAA CAGCCAAGAC AAGTTGTTAC CGAAAATGAT GACAACAG.. 802 ACATAATTGG GTTTCATAGA ATTGCCACAT TTTTGCATGT CTTCTCTAAT TTTAGATGTT 342874 .......... .......... .......... .......... .......... .......... 802 ACATCATTTT ATTTTAATGA CCGTATCATG CCCAAATTTA TACGGTTGCT ACTTTTGTTA 342814 .......... .......... .......... .......... .......... .......... 802 AAATAAACTA GGGTTTTTCC ACTGGAATTT GGGAGTGATA TTGCCTTTGC CAATACAGCT 342754 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GGTTTTTCC ACTGGAATTT GGGAGTGATA TTGCCTTTGC CAATACAGCT 851 GGAGCTGGTT CCACAGCTCC AGACATCTTG AATCAGCAAA AGCTTGCTCT TGTTGATAAC 342694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCTGGTT CCACAGCTCC AGACATCTTG AATCAGCAAA AGCTTGCTCT TGTTGATAAC 911 ACAGCGAGGT AATTGTTTGA CTAATTTTAT GTTCTTCATC ATTCCTGCAA GTTTGTGAAG 342634 |||||||| ACAGCGAG.. .......... .......... .......... .......... .......... 919 TATGAGTTCA ACGGATGTTG GCATGGCTTT TGCAGGGAAT CAGTTGGGCT TTTTGATGAT 342574 ||||| |||||||||| |||||||||| .......... .......... .......... .....GGAAT CAGTTGGGCT TTTTGATGAT 944 TCAGTCAATC CATATGTTGG CTCTGAGATC ACAACAGAAC CTACACAGGG TCTTAACAAT 342514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTCAATC CATATGTTGG CTCTGAGATC ACAACAGAAC CTACACAGGG TCTTAACAAT 1004 CCTATTGTGT TTTGGGATGA TATTATCAAA GGTGTCGGTC AAGAATTTGA TAATGTGAAG 342454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTGTGT TTTGGGATGA TATTATCAAA GGTGTCGGTC AAGAATTTGA TAATGTGAAG 1064 GATTTTCGTG CTCAGTTATG CAAGTATGCT ATTGGGAAAG GATTTGTTTA TCGATTCATT 342394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTCGTG CTCAGTTATG CAAGTATGCT ATTGGGAAAG GATTTGTTTA TCGATTCATT 1124 AAAAATGAAA CCACACGTGT CACTGTAAAA TGTGTTGGTG AGGGTTGCAC ATGGCGGTTG 342334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGAAA CCACACGTGT CACTGTAAAA TGTGTTGGTG AGGGTTGCAC ATGGCGGTTG 1184 CATGCATCTG AATCATCTCG GAACAAGAAA TTTGTTATCA AGAAAATGAC AGACGAGCAT 342274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGCATCTG AATCATCTCG GAACAAGAAA TTTGTTATCA AGAAAATGAC AGACGAGCAT 1244 ACATGTGGTG GAGGAAGTGG AGAGGGTCAG CGGCGAGCAA CAAGACAGTG GCTGACTACT 342214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGTGGTG GAGGAAGTGG AGAGGGTCAG CGGCGAGCAA CAAGACAGTG GCTGACTACT 1304 GTCATTAAGG AGAAGCTGCA TGAGAATCCA TTGTTCAAGC CAAAGGACCT TGTCAAGGAA 342154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATTAAGG AGAAGCTGCA TGAGAATCCA TTGTTCAAGC CAAAGGACCT TGTCAAGGAA 1364 ATTTATGAAG AATACGGAGT TATGCTGACC TATTCACAGG TTTGGCGAGG TAGAGAAGTG 342094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTATGAAG AATACGGAGT TATGCTGACC TATTCACAGG TTTGGCGAGG TAGAGAAGTG 1424 GCACAGAAGG AGCTTTATCA TGCTATCCGG GAGACATATA GCCATTTGCC CTGGTATTGT 342034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAGAAGG AGCTTTATCA TGCTATCCGG GAGACATATA GCCATTTGCC CTGGTATTGT 1484 GAAAGGCTTT TGGAGACCAA TCCAGGTAGC ATAGCTTTGT TGTCTCCGAT GGTGGATACA 341974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGCTTT TGGAGACCAA TCCAGGTAGC ATAGCTTTGT TGTCTCCGAT GGTGGATACA 1544 AAATTCCGCC GCTTCTTTGT TGCATTCCAC GCTTCTTTGC ATGGCTTCAC AAATGGGTGT 341914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTCCGCC GCTTCTTTGT TGCATTCCAC GCTTCTTTGC ATGGCTTCAC AAATGGGTGT 1604 AGGCCTCTCA TATTTCTTGA CAAGGTTCCG CTTAAAGCGA CTAATGAGTA CAAGTTGCTG 341854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCCTCTCA TATTTCTTGA CAAGGTTCCG CTTAAAGCGA CTAATGAGTA CAAGTTGCTG 1664 GTTGCTGCTG GAGTTGATGC AGATGATGGT GTCTTTCCAG TGGCATTTAA TGTGGTTGAA 341794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCTGCTG GAGTTGATGC AGATGATGGT GTCTTTCCAG TGGCATTTAA TGTGGTTGAA 1724 GATGAAAATT ATGAGAGTTG GGTTTGGTTC TTGATGCAGC TGAGGTATGC TCTCCAGAAT 341734 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAAATT ATGAGAGTTG GGTTTGGTTC TTGATGCAGC TGAGGTATGC TCTCCAGAAT 1784 CACAACTATC CTTACAATGC TATGACATTT TTGTCCAGTG GACAAAAGGG ATTGGATGCT 341674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAACTATC CTTACAATGC TATGACATTT TTGTCCAGTG GACAAAAGGG ATTGGATGCT 1844 GCTGTTCCAC AAGTGTTCGA AGAAAGTCAC CACGCCTTCT GTTTGCATCA TATCATGGAA 341614 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTTCCAC AAGTGTTCGA AGAAAGTCAC CACGCCTTCT GTTTGCATCA TATCATGGAA 1904 GAATTCAAAG GAGAGCTGAG GAAGGGACCG TGGTCACAAC AGATAAGAGA TGGGATGGTT 341554 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTCAAAG GAGAGCTGAG GAAGGGACCG TGGTCACAAC AGATAAGAGA TGGGATGGTT 1964 GAGGATTTCA CTCGAGCAGC CCAAGCCTGC AGCATCGAGG ATTTTAACGC ATCAATTGAG 341494 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGATTTCA CTCGAGCAGC CCAAGCCTGC AGCATCGAGG ATTTTAACGC ATCAATTGAG 2024 AGCATAAGGA ATATATCCAC TGAAGCTGCT GATTGGATTA TTGCAAGTAA GCCGGAGCAT 341434 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATAAGGA ATATATCCAC TGAAGCTGCT GATTGGATTA TTGCAAGTAA GCCGGAGCAT 2084 TGGTCAGATG CCATCTTCAG AGGCTGTCGT TATGATCATT TCTCCTCGAA CATTGTTGAT 341374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCAGATG CCATCTTCAG AGGCTGTCGT TATGATCATT TCTCCTCGAA CATTGTTGAT 2144 GCTTTTAATA ACTGGATACC TACCAAGAAG GAAGGATCAA TAGTGCTGAT GATAGACTCT 341314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTTAATA ACTGGATACC TACCAAGAAG GAAGGATCAA TAGTGCTGAT GATAGACTCT 2204 CTGAGAATGA AAATAATGGA GGTGATAGAA GCAAGGCGCG AGTCTTGCAA GTCCTGGTCA 341254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGAATGA AAATAATGGA GGTGATAGAA GCAAGGCGCG AGTCTTGCAA GTCCTGGTCA 2264 GGGCCTTTAA CTCCTTCCAT GGAATTCAAA GTGCAGGATG AGATGTCCAA AGCTGGGAAG 341194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCCTTTAA CTCCTTCCAT GGAATTCAAA GTGCAGGATG AGATGTCCAA AGCTGGGAAG 2324 CTGACTGTGC TGTGCTCTTC TGAAACCGTG TTTGAAGTCC GGGGCAGTGC AATTTATGTT 341134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGACTGTGC TGTGCTCTTC TGAAACCGTG TTTGAAGTCC GGGGCAGTGC AATTTATGTT 2384 GTCAACCTTG CAAATTGGGA ATGCACCTGT CGAAGGTGGC AACTTTCTGG CCTTCCTTGT 341074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAACCTTG CAAATTGGGA ATGCACCTGT CGAAGGTGGC AACTTTCTGG CCTTCCTTGT 2444 ATGCATGCTG TTGCTGTGTT CAACAGGGTT GGGCGATCTT TCTATGACTA CTGTTCAAAA 341014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCATGCTG TTGCTGTGTT CAACAGGGTT GGGCGATCTT TCTATGACTA CTGTTCAAAA 2504 TTTTTCAGAA TAGAGAGCTA CCATTTGGCT TACTCAGGAG CAATATTCCC AATTCCTGAC 340954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCAGAA TAGAGAGCTA CCATTTGGCT TACTCAGGAG CAATATTCCC AATTCCTGAC 2564 ATGGATACCG TTGATTTTAG TGCTGGGGCA AATTTGATTC CACCTCCTAA GCCACGGACA 340894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATACCG TTGATTTTAG TGCTGGGGCA AATTTGATTC CACCTCCTAA GCCACGGACA 2624 TCAGATAAAC CCAGAAGGAA GCGTTTTAAC CCCAACAAGA TACCTACTGT TGTACGGCTC 340834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGATAAAC CCAGAAGGAA GCGTTTTAAC CCCAACAAGA TACCTACTGT TGTACGGCTC 2684 TGTAGCAGGT GCAAGCAAGC AGGACACAAT AAGGCAACCT GTGAAGCGAT TTTGTAGACA 340774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGCAGGT GCAAGCAAGC AGGACACAAT AAGGCAACCT GTGAAGCGAT TTTGTAGACA 2744 ATGGAAGTTC TGGATTATCC AGTATGCGTA GAAGGTATGC CTTCAGTCCG TACTCCAACC 340714 |||||||||| |||||||||| |||||||||| |||| ATGGAAGTTC TGGATTATCC AGTATGCGTA GAAG...... .......... .......... 2778 TTTTCGTCTC CTAAGATAAC CTCTTTCCTT CATTATGAAG TTTGAAATGT GTGAGACTGA 340654 .......... .......... .......... .......... .......... .......... 2778 // intron part 340653 340114 (540 n) not shown // //........ .......... .......... .......... .......... ........// GGCGTACTGA AAAGTAGTTG GTGTAGTATC TGTTGATCTT TGTCTGAAAT GTTTGACTAA 340054 .......... .......... .......... .......... .......... .......... 2778 TCACATATTC TGAACATTTT ATCTCTGTTT GACGATTACA GGGTGAAAGG TCTGAAGCTT 339994 ||||||||| |||||||||| .......... .......... .......... .......... .GGTGAAAGG TCTGAAGCTT 2797 TAAGTGGAGT AGCGCTGGTG AGAAGCCGTA GATTTTGTTG GATGGATGGA AGAACGATGA 339934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTGGAGT AGCGCTGGTG AGAAGCCGTA GATTTTGTTG GATGGATGGA AGAACGATGA 2857 GATATGATGA ATGATACCAC CGTTTTGTAA CTTAATATTA TATTATAAAT GGGGGTGGAA 339874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGATGA ATGATACCAC CGTTTTGTAA CTTAATATTA TATTATAAAT GGGGGTGGAA 2917 AGATGTAGTA ATTTAAATGT CAAATCTTAA GAAGAAGAGG AATGAAGGAT GAGCTTTGTT 339814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGTAGTA ATTTAAATGT CAAATCTTAA GAAGAAGAGG AATGAAGGAT GAGCTTTGTT 2977 AGTAGATAGA TTATGGTTAG CGGTTTAGAA GTCATAATAG GTAGCATGGC TGTTGAAAAT 339754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAGATAGA TTATGGTTAG CGGTTTAGAA GTCATAATAG GTAGCATGGC TGTTGAAAAT 3037 GATGATGATT CAAGTGTACC AGTCCATGAT TTTAAACATT GTCTTTCTAG TCTTCTATTC 339694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATGATT CAAGTGTACC AGTCCATGAT TTTAAACATT GTCTTTCTAG TCTTCTATTC 3097 AGTGTTAAGG ATGGCTATCA ACTAGTT 339667 |||||||||| |||||||||| ||||||| AGTGTTAAGG ATGGCTATCA ACTAGTT 3124 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32985548|dbj|AK100339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081I19, full insert sequence 1 GACGTGTCAC CCTCTTCCCT TTGGCCCTGT TGCCCCCAAT TCGCCTTCGA CCCCTTCTCC 61 TTCTCCTTCA ACATCTAATC ATCACGGAGA AAGGATAAGG GGTGGGTTCA CAAATTTTTT 121 CAATTGTGTT CTTATTTATT AGAGGTAATT AAGTAATTAT TATTAGAGGT ACAAATTAAG 181 GTCTCTGAGA GAGAGGGGCC GGGGTGGGCC CTAGCTAGGT AATGGCAGCC TCGCCGGAGT 241 CGTCTCCGTC GTCGGCCAAC TCCACCACCC CGTCAGCACC GTCGCCGTCT TCGTCGTTGT 301 CAAAATCACC CTCACCTCCC TCCCCATCAT CGCCGCCGCC ACCAGCATCG ACGAACGCGC 361 CACCAAAATC AGCTGGCGGC GTTTCATCTT CCACGCAAGC GCAACCATCG TCGGAATCAT 421 CGTCGGAGTC TACGACTACG CCTTCGGCGC CAGCGGAGAG GAAGAGCGGC GGGTCCTCTC 481 GAGGAGAGTC CGGGCGGTAT CGCGGTGATG TGACCGCCGG CGTGTTTGTG GGGTTATTTG 541 TGGTGGCGAT GGTTGCGGTG TTGGCGGGTG TGGTGGCCAT CGTGGTGTGC TGCTGTATAA 601 AGATAACGAA GAAGAAGAAG CGGCCGCCGC CGCCGAACAT GCCCTTCTTC ACCGACGAGA 661 AGGGCAACGT GTACTACGCC ACAGGCGGCC TGCCTCCCAT GTGGCAGCAG CACGGCAGCA 721 GCAACTACAG CATCCCACCT CCGCCGCCGC CCGGCTGGCA CATGTCATCG TCGGCGGGGG 781 GTTTCAGCGG CGAGATGGGG ATGGGGTACT CGTCGGGACC GTACGGTCCG GCGCTGCCGC 841 CGCCGTCGCC GAACGTGGCG CTGGGTTTCT CCAAGAGCTC CTTCTCGTAC GAGGAGCTGG 901 CGGCGGCGAC GTCGGGGTTC TCGGCGGCGA ACCTGCTGGG GCAGGGAGGG TTCGGGTACG 961 TGTACAAGGG GGTGCTCGCC GGGAACGGGA AGGAGGTGGC GGTGAAGCAG CTCAAGTCCG 1021 GGAGCGGGCA GGGGGAGCGG GAGTTCCAGG CGGAGGTGGA CATCATCAGC CGCGTCCACC 1081 ACCGCCACCT CGTGTCTCTG GTGGGATACT GCATCGCCGC CAACCAGCGC ATGCTCGTCT 1141 ACGAGTTCGT CCCCAACGGC ACCCTCGAGC ACCACCTCTA TAGAGGCGGC AATGGCGATC 1201 GAGTTCTAGA CTGGTCGGCG CGGCACAGGA TCGCGCTGGG GTCGGCCAAG GGTCTCGCCT 1261 ACCTCCACGA AGACTGCCAC CCGCGGATCA TCCACCGCGA CATCAAGGCG GCCAACATCC 1321 TCCTGGACGC CAACTACGAG GCCATGGTCG CCGACTTCGG CCTCGCCAAG CTCACCACCG 1381 ACACCAACAC CCACGTCTCC ACCCGCGTCA TGGGCACCTT CGGCTACCTG GCCCCCGAGT 1441 ACGCCTCCAC CGGCAAGCTC ACCGAGAAGT CCGACGTCTT CTCCTTCGGC GTCATGCTGC 1501 TGGAGCTCCT CACCGGGCGG CGGCCCGTCG ACACCTCCAA CTACATGGAG GACAGCCTCG 1561 TGGACTGGGC GAGGCCGGTG CTGGCGCGCT TGCTGGTCGC CGGCGGCGAG GAAGGAGGAT 1621 TAATCCGGGA GCTGGTGGAC TCGCGGCTGG GCGGGGAGTA CTCGGCGGTG GAGGTGGAGA 1681 GGATGGCGGC GTGCGCGGCG GCGAGCATCC GGCACTCGGC GCGGCAGCGG CCCAAGATGA 1741 GCCAGATCGT GAGGGCGCTG GAGGGGGACG CCTCGCTCTC GCTGGACCAC CACCACGACG 1801 ACGACTTCTC CGCCTCATCG GAGATCTCGC GGCATCGGCA GGTGGCCTTC GACAGCGGCG 1861 ACTACACCGA CGACTACTCC ACCACCTCCA CCTCCACCCA CTCCTCCCGC CTCCCACCCA 1921 AGCGCTAATC ATCACTAATT CTTTTATTTA TCGATTTAAA TTATAATTAG CTGGTTTCAC 1981 AAATCACCCT ACACTCGTGG AGAAACCATC TTTACTCCCG GTTGGATATC CATTTAATCC 2041 CGGTTTTCCA ACCGGGAGTA AGGATCCGGG ACTAACCGGG ACTAAAGATG TATCCTTAGC 2101 CACCAACCAG GACTAAAAAG AAGGGATCAA CCGGGACTAA ACAGACAATA GCGGTAGTGC Genomic Template: file=OSchr10, strand=-, from=355019, to=351202, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 354721 354623 ( 99 n); cDNA 1 99 ( 99 n); score: 0.980 Intron 1 354622 353563 (1060 n); Pd: 0.998 (s: 1.00), Pa: 0.640 (s: 1.00) Exon 2 353562 351502 (2061 n); cDNA 100 2160 (2061 n); score: 1.000 MATCH OSchr10-v3- 32985548+ 0.999 2160 1.000 C PGS_OSchr10-v3-_32985548+ (354721 354623,353562 351502) Alignment (genomic DNA sequence = upper lines): TGCGTGTCAC CCTCTTCCCT TTGGCCCTGT TGCCCCCAAT TCGCCTTCGA CCCCTTCTCC 354662 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGTGTCAC CCTCTTCCCT TTGGCCCTGT TGCCCCCAAT TCGCCTTCGA CCCCTTCTCC 60 TTCTCCTTCA ACATCTAATC ATCACGGAGA AAGGATAAGG TACATTACCC CCATCACAAT 354602 |||||||||| |||||||||| |||||||||| ||||||||| TTCTCCTTCA ACATCTAATC ATCACGGAGA AAGGATAAG. .......... .......... 99 ACATAAAAAA GTTGTTTTTT ATTGCATTTG GTTGAAACTT GCATGATTGT TGATCTAGCG 354542 .......... .......... .......... .......... .......... .......... 99 // intron part 354541 353642 (900 n) not shown // //........ .......... .......... .......... .......... ........// TGAACAAATC AACTCACAAC AATTTTTCAC CTGTCCTAAT TTTATCCGTT ATTGATTAAT 353582 .......... .......... .......... .......... .......... .......... 99 TAAATTTAAC TTTTTGCAGG GGTGGGTTCA CAAATTTTTT CAATTGTGTT CTTATTTATT 353522 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G GGTGGGTTCA CAAATTTTTT CAATTGTGTT CTTATTTATT 140 AGAGGTAATT AAGTAATTAT TATTAGAGGT ACAAATTAAG GTCTCTGAGA GAGAGGGGCC 353462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGTAATT AAGTAATTAT TATTAGAGGT ACAAATTAAG GTCTCTGAGA GAGAGGGGCC 200 GGGGTGGGCC CTAGCTAGGT AATGGCAGCC TCGCCGGAGT CGTCTCCGTC GTCGGCCAAC 353402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTGGGCC CTAGCTAGGT AATGGCAGCC TCGCCGGAGT CGTCTCCGTC GTCGGCCAAC 260 TCCACCACCC CGTCAGCACC GTCGCCGTCT TCGTCGTTGT CAAAATCACC CTCACCTCCC 353342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCACCACCC CGTCAGCACC GTCGCCGTCT TCGTCGTTGT CAAAATCACC CTCACCTCCC 320 TCCCCATCAT CGCCGCCGCC ACCAGCATCG ACGAACGCGC CACCAAAATC AGCTGGCGGC 353282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCCATCAT CGCCGCCGCC ACCAGCATCG ACGAACGCGC CACCAAAATC AGCTGGCGGC 380 GTTTCATCTT CCACGCAAGC GCAACCATCG TCGGAATCAT CGTCGGAGTC TACGACTACG 353222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCATCTT CCACGCAAGC GCAACCATCG TCGGAATCAT CGTCGGAGTC TACGACTACG 440 CCTTCGGCGC CAGCGGAGAG GAAGAGCGGC GGGTCCTCTC GAGGAGAGTC CGGGCGGTAT 353162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCGGCGC CAGCGGAGAG GAAGAGCGGC GGGTCCTCTC GAGGAGAGTC CGGGCGGTAT 500 CGCGGTGATG TGACCGCCGG CGTGTTTGTG GGGTTATTTG TGGTGGCGAT GGTTGCGGTG 353102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGGTGATG TGACCGCCGG CGTGTTTGTG GGGTTATTTG TGGTGGCGAT GGTTGCGGTG 560 TTGGCGGGTG TGGTGGCCAT CGTGGTGTGC TGCTGTATAA AGATAACGAA GAAGAAGAAG 353042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCGGGTG TGGTGGCCAT CGTGGTGTGC TGCTGTATAA AGATAACGAA GAAGAAGAAG 620 CGGCCGCCGC CGCCGAACAT GCCCTTCTTC ACCGACGAGA AGGGCAACGT GTACTACGCC 352982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCCGCCGC CGCCGAACAT GCCCTTCTTC ACCGACGAGA AGGGCAACGT GTACTACGCC 680 ACAGGCGGCC TGCCTCCCAT GTGGCAGCAG CACGGCAGCA GCAACTACAG CATCCCACCT 352922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGCGGCC TGCCTCCCAT GTGGCAGCAG CACGGCAGCA GCAACTACAG CATCCCACCT 740 CCGCCGCCGC CCGGCTGGCA CATGTCATCG TCGGCGGGGG GTTTCAGCGG CGAGATGGGG 352862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGCCGC CCGGCTGGCA CATGTCATCG TCGGCGGGGG GTTTCAGCGG CGAGATGGGG 800 ATGGGGTACT CGTCGGGACC GTACGGTCCG GCGCTGCCGC CGCCGTCGCC GAACGTGGCG 352802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGGTACT CGTCGGGACC GTACGGTCCG GCGCTGCCGC CGCCGTCGCC GAACGTGGCG 860 CTGGGTTTCT CCAAGAGCTC CTTCTCGTAC GAGGAGCTGG CGGCGGCGAC GTCGGGGTTC 352742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGGTTTCT CCAAGAGCTC CTTCTCGTAC GAGGAGCTGG CGGCGGCGAC GTCGGGGTTC 920 TCGGCGGCGA ACCTGCTGGG GCAGGGAGGG TTCGGGTACG TGTACAAGGG GGTGCTCGCC 352682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGCGGCGA ACCTGCTGGG GCAGGGAGGG TTCGGGTACG TGTACAAGGG GGTGCTCGCC 980 GGGAACGGGA AGGAGGTGGC GGTGAAGCAG CTCAAGTCCG GGAGCGGGCA GGGGGAGCGG 352622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAACGGGA AGGAGGTGGC GGTGAAGCAG CTCAAGTCCG GGAGCGGGCA GGGGGAGCGG 1040 GAGTTCCAGG CGGAGGTGGA CATCATCAGC CGCGTCCACC ACCGCCACCT CGTGTCTCTG 352562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTCCAGG CGGAGGTGGA CATCATCAGC CGCGTCCACC ACCGCCACCT CGTGTCTCTG 1100 GTGGGATACT GCATCGCCGC CAACCAGCGC ATGCTCGTCT ACGAGTTCGT CCCCAACGGC 352502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGATACT GCATCGCCGC CAACCAGCGC ATGCTCGTCT ACGAGTTCGT CCCCAACGGC 1160 ACCCTCGAGC ACCACCTCTA TAGAGGCGGC AATGGCGATC GAGTTCTAGA CTGGTCGGCG 352442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCTCGAGC ACCACCTCTA TAGAGGCGGC AATGGCGATC GAGTTCTAGA CTGGTCGGCG 1220 CGGCACAGGA TCGCGCTGGG GTCGGCCAAG GGTCTCGCCT ACCTCCACGA AGACTGCCAC 352382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCACAGGA TCGCGCTGGG GTCGGCCAAG GGTCTCGCCT ACCTCCACGA AGACTGCCAC 1280 CCGCGGATCA TCCACCGCGA CATCAAGGCG GCCAACATCC TCCTGGACGC CAACTACGAG 352322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCGGATCA TCCACCGCGA CATCAAGGCG GCCAACATCC TCCTGGACGC CAACTACGAG 1340 GCCATGGTCG CCGACTTCGG CCTCGCCAAG CTCACCACCG ACACCAACAC CCACGTCTCC 352262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCATGGTCG CCGACTTCGG CCTCGCCAAG CTCACCACCG ACACCAACAC CCACGTCTCC 1400 ACCCGCGTCA TGGGCACCTT CGGCTACCTG GCCCCCGAGT ACGCCTCCAC CGGCAAGCTC 352202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCGCGTCA TGGGCACCTT CGGCTACCTG GCCCCCGAGT ACGCCTCCAC CGGCAAGCTC 1460 ACCGAGAAGT CCGACGTCTT CTCCTTCGGC GTCATGCTGC TGGAGCTCCT CACCGGGCGG 352142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGAGAAGT CCGACGTCTT CTCCTTCGGC GTCATGCTGC TGGAGCTCCT CACCGGGCGG 1520 CGGCCCGTCG ACACCTCCAA CTACATGGAG GACAGCCTCG TGGACTGGGC GAGGCCGGTG 352082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCCCGTCG ACACCTCCAA CTACATGGAG GACAGCCTCG TGGACTGGGC GAGGCCGGTG 1580 CTGGCGCGCT TGCTGGTCGC CGGCGGCGAG GAAGGAGGAT TAATCCGGGA GCTGGTGGAC 352022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCGCGCT TGCTGGTCGC CGGCGGCGAG GAAGGAGGAT TAATCCGGGA GCTGGTGGAC 1640 TCGCGGCTGG GCGGGGAGTA CTCGGCGGTG GAGGTGGAGA GGATGGCGGC GTGCGCGGCG 351962 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCGGCTGG GCGGGGAGTA CTCGGCGGTG GAGGTGGAGA GGATGGCGGC GTGCGCGGCG 1700 GCGAGCATCC GGCACTCGGC GCGGCAGCGG CCCAAGATGA GCCAGATCGT GAGGGCGCTG 351902 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGCATCC GGCACTCGGC GCGGCAGCGG CCCAAGATGA GCCAGATCGT GAGGGCGCTG 1760 GAGGGGGACG CCTCGCTCTC GCTGGACCAC CACCACGACG ACGACTTCTC CGCCTCATCG 351842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGGGACG CCTCGCTCTC GCTGGACCAC CACCACGACG ACGACTTCTC CGCCTCATCG 1820 GAGATCTCGC GGCATCGGCA GGTGGCCTTC GACAGCGGCG ACTACACCGA CGACTACTCC 351782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATCTCGC GGCATCGGCA GGTGGCCTTC GACAGCGGCG ACTACACCGA CGACTACTCC 1880 ACCACCTCCA CCTCCACCCA CTCCTCCCGC CTCCCACCCA AGCGCTAATC ATCACTAATT 351722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACCTCCA CCTCCACCCA CTCCTCCCGC CTCCCACCCA AGCGCTAATC ATCACTAATT 1940 CTTTTATTTA TCGATTTAAA TTATAATTAG CTGGTTTCAC AAATCACCCT ACACTCGTGG 351662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTATTTA TCGATTTAAA TTATAATTAG CTGGTTTCAC AAATCACCCT ACACTCGTGG 2000 AGAAACCATC TTTACTCCCG GTTGGATATC CATTTAATCC CGGTTTTCCA ACCGGGAGTA 351602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAACCATC TTTACTCCCG GTTGGATATC CATTTAATCC CGGTTTTCCA ACCGGGAGTA 2060 AGGATCCGGG ACTAACCGGG ACTAAAGATG TATCCTTAGC CACCAACCAG GACTAAAAAG 351542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATCCGGG ACTAACCGGG ACTAAAGATG TATCCTTAGC CACCAACCAG GACTAAAAAG 2120 AAGGGATCAA CCGGGACTAA ACAGACAATA GCGGTAGTGC 351502 |||||||||| |||||||||| |||||||||| |||||||||| AAGGGATCAA CCGGGACTAA ACAGACAATA GCGGTAGTGC 2160 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32981844|dbj|AK071821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114J15, full insert sequence 1 GGCGTGTCAC CCTCTTCCCT TTGGCCCTGT TGCCCCCAAT TCGCCTTCGA CCCCTTCTCC 61 TTCTCCTTCA ACATCTAATC ATCACGGAGA AAGGATAAGG GGTGGGTTCA CAAATTTTTT 121 CAATTGTGTT CTTATTTATT AGAGGTAATT AAGTAATTAT TATTAGAGGT ACAAATTAAG 181 GTCTCTGAGA GAGAGGGGCC GGGGTGGGCC CTAGCTAGGT AATGGCAGCC TCGCCGGAGT 241 CGTCTCCGTC GTCGGCCAAC TCCACCACCC CGTCAGCACC GTCGCCGTCT TCGTCGTTGT 301 CAAAATCACC CTCACCTCCC TCCCCATCAT CGCCGCCGCC ACCAGCATCG ACGAACGCGC 361 CACCAAAATC AGCTGGCGGC GTTTCATCTT CCACGCAAGC GCAACCATCG TCGGAATCAT 421 CGTCGGAGTC TACGACTACG CCTTCGGCGC CAGCGGAGAG GAAGAGCGGC GGGTCCTCTC 481 GAGGAGAGTC CGGGCGGTAT CGCGGTGATG TGACCGCCGG CGTGTTTGTG GGGTTATTTG 541 TGGTGGCGAT GGTTGCGGTG TTGGCGGGTG TGGTGGCCAT CGTGGTGTGC TGCTGTATAA 601 AGATAACGAA GAAGAAGAAG CGGCCGCCGC CGCCGAACAT GCCCTTCTTC ACCGACGAGA 661 AGGGCAACGT GTACTACGCC ACAGGCGGCC TGCCTCCCAT GTGGCAGCAG CACGGCAGCA 721 GCAACTACAG CATCCCACCT CCGCCGCCGC CCGGCTGGCA CATGTCATCG TCGGCGGGGG 781 GTTTCAGCGG CGAGATGGGG ATGGGGTACT CGTCGGGACC GTACGGTCCG GCGCTGCCGC 841 CGCCGTCGCC GGACGTGGCG CTGGGTTTCT CCAAGAGCTC CTTCTCGTAC GAGGAGCTGG 901 CGGCGGCGAC GTCGGGGTTC TCGGCGGCGA ACCTGCTGGG GCAGGGAGGG TTCGGGTACG 961 TGTACAAGGG GGTGCTCGCC GGGAACGGGA AGGAGGTGGC GGTGAAGCAG CTCAAGTCCG 1021 GGAGCGGGCA GGGGGAGCGG GAGTTCCAGG CGGAGGTGGA CATCATCAGC CGCGTCCACC 1081 ACCGCCACCT CGTGTCTCTG GTGGGATACT GCATCGCCGC CAACCAGCGC ATGCTCGTCT 1141 ACGAGTTCGT CCCCAACGGC ACCCTCGAGC ACCACCTCTA TAGAGGCGGC AATGGCGATC 1201 GAGTTCTAGA CTGGTCGGCG CGGCACAGGA TCGCGCTGGG GTCGGCCAAG GGTCTCGCCT 1261 ACCTCCACGA AGACTGCCAC CCGCGGATCA TCCACCGCGA CATCAAGGCG GCCAACATCC 1321 TCCTGGACGC CAACTACGAG GCCATGGTCG CCGACTTCGG CCTCGCCAAG CTCACCACCG 1381 ACACCAACAC CCACGTCTCC ACCCGCGTCA TGGGCACCTT CGGCTACCTG GCCCCCGAGT 1441 ACGCCTCACC GGCAAGCTCA CCGAGAAGTC CGACGTCTTC TCCTTCGGCG TCATGCTGCT 1501 GGAGCTCCTC ACCGGGCGGC GGCCCGTCGA CACCTCCAAC TACATGGAGG ACAGCCTCGT 1561 GGACTGGGCG AGACCGGTGC TGGCGCGCTT GCTGGTCGCC GGCGGCGAGG AAGGAGGATT 1621 AATCCGGGAG CTGGTGGACT CGCGGCTGGG CGGGGAGTAC TCGGCGGTGG AGGTGGAGAG 1681 GATGGCGGCG TGCGCGGCGG CGAGCATCCG GCACTCGGCG CGGCAGCGGC CCAAGATGAG 1741 CCAGATCGTG AGGGCGCTGG AGGGGGACGC CTCGCTCTCG CTGGACCACC ACCACGACGA 1801 CGACTTCTCC GCCTCATCGG AGATCTCGCG GCATCGGCAG GTGGCCTTCG ACAGCGGCGA 1861 CTACACCGAC GACTACTCCA CCACCTCCAC CTCCACCCAC TCCTCCCGCC TCCCACCCAA 1921 GCGCTAATCA TCACTAATTC TTTTATTTAT CGATTCAAAT TATAATTAGC TGGTTTC Genomic Template: file=OSchr10, strand=-, from=355020, to=351384, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 354721 354623 ( 99 n); cDNA 1 99 ( 99 n); score: 0.990 Intron 1 354622 353563 (1060 n); Pd: 0.998 (s: 1.00), Pa: 0.640 (s: 1.00) Exon 2 353562 351684 (1879 n); cDNA 100 1977 (1878 n); score: 0.998 MATCH OSchr10-v3- 32981844+ 0.997 1978 1.001 C PGS_OSchr10-v3-_32981844+ (354721 354623,353562 351684) Alignment (genomic DNA sequence = upper lines): TGCGTGTCAC CCTCTTCCCT TTGGCCCTGT TGCCCCCAAT TCGCCTTCGA CCCCTTCTCC 354662 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGTGTCAC CCTCTTCCCT TTGGCCCTGT TGCCCCCAAT TCGCCTTCGA CCCCTTCTCC 60 TTCTCCTTCA ACATCTAATC ATCACGGAGA AAGGATAAGG TACATTACCC CCATCACAAT 354602 |||||||||| |||||||||| |||||||||| ||||||||| TTCTCCTTCA ACATCTAATC ATCACGGAGA AAGGATAAG. .......... .......... 99 ACATAAAAAA GTTGTTTTTT ATTGCATTTG GTTGAAACTT GCATGATTGT TGATCTAGCG 354542 .......... .......... .......... .......... .......... .......... 99 // intron part 354541 353642 (900 n) not shown // //........ .......... .......... .......... .......... ........// TGAACAAATC AACTCACAAC AATTTTTCAC CTGTCCTAAT TTTATCCGTT ATTGATTAAT 353582 .......... .......... .......... .......... .......... .......... 99 TAAATTTAAC TTTTTGCAGG GGTGGGTTCA CAAATTTTTT CAATTGTGTT CTTATTTATT 353522 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G GGTGGGTTCA CAAATTTTTT CAATTGTGTT CTTATTTATT 140 AGAGGTAATT AAGTAATTAT TATTAGAGGT ACAAATTAAG GTCTCTGAGA GAGAGGGGCC 353462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGTAATT AAGTAATTAT TATTAGAGGT ACAAATTAAG GTCTCTGAGA GAGAGGGGCC 200 GGGGTGGGCC CTAGCTAGGT AATGGCAGCC TCGCCGGAGT CGTCTCCGTC GTCGGCCAAC 353402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTGGGCC CTAGCTAGGT AATGGCAGCC TCGCCGGAGT CGTCTCCGTC GTCGGCCAAC 260 TCCACCACCC CGTCAGCACC GTCGCCGTCT TCGTCGTTGT CAAAATCACC CTCACCTCCC 353342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCACCACCC CGTCAGCACC GTCGCCGTCT TCGTCGTTGT CAAAATCACC CTCACCTCCC 320 TCCCCATCAT CGCCGCCGCC ACCAGCATCG ACGAACGCGC CACCAAAATC AGCTGGCGGC 353282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCCATCAT CGCCGCCGCC ACCAGCATCG ACGAACGCGC CACCAAAATC AGCTGGCGGC 380 GTTTCATCTT CCACGCAAGC GCAACCATCG TCGGAATCAT CGTCGGAGTC TACGACTACG 353222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCATCTT CCACGCAAGC GCAACCATCG TCGGAATCAT CGTCGGAGTC TACGACTACG 440 CCTTCGGCGC CAGCGGAGAG GAAGAGCGGC GGGTCCTCTC GAGGAGAGTC CGGGCGGTAT 353162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCGGCGC CAGCGGAGAG GAAGAGCGGC GGGTCCTCTC GAGGAGAGTC CGGGCGGTAT 500 CGCGGTGATG TGACCGCCGG CGTGTTTGTG GGGTTATTTG TGGTGGCGAT GGTTGCGGTG 353102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGGTGATG TGACCGCCGG CGTGTTTGTG GGGTTATTTG TGGTGGCGAT GGTTGCGGTG 560 TTGGCGGGTG TGGTGGCCAT CGTGGTGTGC TGCTGTATAA AGATAACGAA GAAGAAGAAG 353042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCGGGTG TGGTGGCCAT CGTGGTGTGC TGCTGTATAA AGATAACGAA GAAGAAGAAG 620 CGGCCGCCGC CGCCGAACAT GCCCTTCTTC ACCGACGAGA AGGGCAACGT GTACTACGCC 352982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCCGCCGC CGCCGAACAT GCCCTTCTTC ACCGACGAGA AGGGCAACGT GTACTACGCC 680 ACAGGCGGCC TGCCTCCCAT GTGGCAGCAG CACGGCAGCA GCAACTACAG CATCCCACCT 352922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGCGGCC TGCCTCCCAT GTGGCAGCAG CACGGCAGCA GCAACTACAG CATCCCACCT 740 CCGCCGCCGC CCGGCTGGCA CATGTCATCG TCGGCGGGGG GTTTCAGCGG CGAGATGGGG 352862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGCCGC CCGGCTGGCA CATGTCATCG TCGGCGGGGG GTTTCAGCGG CGAGATGGGG 800 ATGGGGTACT CGTCGGGACC GTACGGTCCG GCGCTGCCGC CGCCGTCGCC GAACGTGGCG 352802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ATGGGGTACT CGTCGGGACC GTACGGTCCG GCGCTGCCGC CGCCGTCGCC GGACGTGGCG 860 CTGGGTTTCT CCAAGAGCTC CTTCTCGTAC GAGGAGCTGG CGGCGGCGAC GTCGGGGTTC 352742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGGTTTCT CCAAGAGCTC CTTCTCGTAC GAGGAGCTGG CGGCGGCGAC GTCGGGGTTC 920 TCGGCGGCGA ACCTGCTGGG GCAGGGAGGG TTCGGGTACG TGTACAAGGG GGTGCTCGCC 352682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGCGGCGA ACCTGCTGGG GCAGGGAGGG TTCGGGTACG TGTACAAGGG GGTGCTCGCC 980 GGGAACGGGA AGGAGGTGGC GGTGAAGCAG CTCAAGTCCG GGAGCGGGCA GGGGGAGCGG 352622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAACGGGA AGGAGGTGGC GGTGAAGCAG CTCAAGTCCG GGAGCGGGCA GGGGGAGCGG 1040 GAGTTCCAGG CGGAGGTGGA CATCATCAGC CGCGTCCACC ACCGCCACCT CGTGTCTCTG 352562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTCCAGG CGGAGGTGGA CATCATCAGC CGCGTCCACC ACCGCCACCT CGTGTCTCTG 1100 GTGGGATACT GCATCGCCGC CAACCAGCGC ATGCTCGTCT ACGAGTTCGT CCCCAACGGC 352502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGATACT GCATCGCCGC CAACCAGCGC ATGCTCGTCT ACGAGTTCGT CCCCAACGGC 1160 ACCCTCGAGC ACCACCTCTA TAGAGGCGGC AATGGCGATC GAGTTCTAGA CTGGTCGGCG 352442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCTCGAGC ACCACCTCTA TAGAGGCGGC AATGGCGATC GAGTTCTAGA CTGGTCGGCG 1220 CGGCACAGGA TCGCGCTGGG GTCGGCCAAG GGTCTCGCCT ACCTCCACGA AGACTGCCAC 352382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCACAGGA TCGCGCTGGG GTCGGCCAAG GGTCTCGCCT ACCTCCACGA AGACTGCCAC 1280 CCGCGGATCA TCCACCGCGA CATCAAGGCG GCCAACATCC TCCTGGACGC CAACTACGAG 352322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCGGATCA TCCACCGCGA CATCAAGGCG GCCAACATCC TCCTGGACGC CAACTACGAG 1340 GCCATGGTCG CCGACTTCGG CCTCGCCAAG CTCACCACCG ACACCAACAC CCACGTCTCC 352262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCATGGTCG CCGACTTCGG CCTCGCCAAG CTCACCACCG ACACCAACAC CCACGTCTCC 1400 ACCCGCGTCA TGGGCACCTT CGGCTACCTG GCCCCCGAGT ACGCCTCCAC CGGCAAGCTC 352202 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ACCCGCGTCA TGGGCACCTT CGGCTACCTG GCCCCCGAGT ACGCCT-CAC CGGCAAGCTC 1459 ACCGAGAAGT CCGACGTCTT CTCCTTCGGC GTCATGCTGC TGGAGCTCCT CACCGGGCGG 352142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGAGAAGT CCGACGTCTT CTCCTTCGGC GTCATGCTGC TGGAGCTCCT CACCGGGCGG 1519 CGGCCCGTCG ACACCTCCAA CTACATGGAG GACAGCCTCG TGGACTGGGC GAGGCCGGTG 352082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| CGGCCCGTCG ACACCTCCAA CTACATGGAG GACAGCCTCG TGGACTGGGC GAGACCGGTG 1579 CTGGCGCGCT TGCTGGTCGC CGGCGGCGAG GAAGGAGGAT TAATCCGGGA GCTGGTGGAC 352022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCGCGCT TGCTGGTCGC CGGCGGCGAG GAAGGAGGAT TAATCCGGGA GCTGGTGGAC 1639 TCGCGGCTGG GCGGGGAGTA CTCGGCGGTG GAGGTGGAGA GGATGGCGGC GTGCGCGGCG 351962 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCGGCTGG GCGGGGAGTA CTCGGCGGTG GAGGTGGAGA GGATGGCGGC GTGCGCGGCG 1699 GCGAGCATCC GGCACTCGGC GCGGCAGCGG CCCAAGATGA GCCAGATCGT GAGGGCGCTG 351902 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGCATCC GGCACTCGGC GCGGCAGCGG CCCAAGATGA GCCAGATCGT GAGGGCGCTG 1759 GAGGGGGACG CCTCGCTCTC GCTGGACCAC CACCACGACG ACGACTTCTC CGCCTCATCG 351842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGGGACG CCTCGCTCTC GCTGGACCAC CACCACGACG ACGACTTCTC CGCCTCATCG 1819 GAGATCTCGC GGCATCGGCA GGTGGCCTTC GACAGCGGCG ACTACACCGA CGACTACTCC 351782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATCTCGC GGCATCGGCA GGTGGCCTTC GACAGCGGCG ACTACACCGA CGACTACTCC 1879 ACCACCTCCA CCTCCACCCA CTCCTCCCGC CTCCCACCCA AGCGCTAATC ATCACTAATT 351722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACCTCCA CCTCCACCCA CTCCTCCCGC CTCCCACCCA AGCGCTAATC ATCACTAATT 1939 CTTTTATTTA TCGATTTAAA TTATAATTAG CTGGTTTC 351684 |||||||||| |||||| ||| |||||||||| |||||||| CTTTTATTTA TCGATTCAAA TTATAATTAG CTGGTTTC 1977 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|37988725|dbj|AK112062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D06, full insert sequence 1 CTTGCCTCTT CCGGGTGATG TTGATGTCAT TTGTGGTGGG CCACCATGCC AAGGAATAAG 61 TGGTTTCAAT CGGTTCAGAA ACCGCAAAGA GCCACTAAAA GACGAGAAAA ACAAACAGAT 121 GGTGACATTC ATGGATATTG TGGCATACCT GAAGCCTAAG TATGTCCTGA TGGAAAATGT 181 TGTAGACATA CTGAAGTTTG CAGATGGTTA CCTTGGACGT TATGCCTTGA GCCGTCTGGT 241 GGCTATGAAG TACCAAGCAC GACTTGGAAT GATGGTTGCA GGTTGTTATG GCTTGCCACA 301 ATTTAGGATG CGTGTGTTCC TCTGGGGAGC TCTTCCTACC ATGGTGCTGC CAAAGTATCC 361 GCTTCCCACT CATAATGTTG TTGTCCGTGG TGGTGCCCCA AATGCTTTTT CTCAAAGTAT 421 TGTTGCATAC GATGAAACAC AGAAGCCAAC ATTGAAAAAT GCACTGCTGC TTGGCGATGC 481 AATTTCGGAT TTGCCAGAGG TAAACAACCA TCAGCCTAAT GAAGTGATGG AATATGGTTC 541 TTCCCCCAAA ACAGAATTCC AGCGCTATAT CCGGCTTAGC CGTAAAGAAA TGCTGGATAG 601 TTCTTTTGAA GGGAAGGATG GTCGAGATCT AGGCAAGCTT TTGGATCACC AGCCCTTAAA 661 GCTAAATAAG GATGACCATG AGCGTGTGCA GCAAATTCCA GTAAAGAAGG GAGCCAACTT 721 CCGGGACCTG AAGGGTGTCA GGGTTGGGGC AAACAACATC GTGGAGTGGG ATCCAGACGT 781 TCCCCGTGTA TATTTATCTT CTGGCAAGCC TTTGGTTCCT GACTACGCGA TGTCTTTCAT 841 CAAAGGGAGA TCACTGAAGC CATTTGGGCG CTTGTGGTGG GATGAGACGG TTCCTACAGT 901 TGTGACCCGA GCAGAGCCAC ACAACCAGAT TATATTGCAT CCGAATCAGG CGAGAGTTCT 961 GACCGTAAGG GAGAATGCAA GGTTGCAGGG GTTCCCAGAC TACTACAAGA TGTTTGGCCC 1021 TATCAAAGAG AAGTATATAC AAGTTGGCAA TGCAGTTGCT GTACCTGTTG CTCGTGCATT 1081 GGGTTACTCC CTTGGGCTTG CATACCAGCG TGAGTCGGAG GGGAGCAGCC CTCTGTTCGT 1141 CCTGCCAGAC AGCTTCACGG AAGTCGGGCG ACAGGCGGCG CCGGCAAGAG CATCCTCTGT 1201 TGGTATCCCT GTTGGCGAGG TTGTTGAGCA ATAGAACACT TGGGTAGAGT AGAGTCATTA 1261 TTTGGTTCGA TTCGAACCGA TCCGGGAGAA TGTTGTTTAA AATCACTGAT CAGCCACCTT 1321 GGTGCTGTCA TGTGATCACC ATCAATGTTA TTATTGATTG ATTGAATGTT GTAAGGCTGG 1381 TGGCACTCCT GCTTGAGTGC TTGTTGTACT TGTAGCATAA GGTCCAAAAC ATTCATTCAT 1441 ATCCTTCTAT GGGCTATCTT ATGTCTGTAT CCTGAT Genomic Template: file=OSchr10, strand=-, from=361759, to=356012, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 361553 361541 ( 13 n); cDNA 1 13 ( 13 n); score: 1.000 Intron 1 361540 361459 ( 82 n); Pd: 0.999 (s: 0), Pa: 0.996 (s: 1.00) Exon 2 361458 361129 ( 330 n); cDNA 14 343 ( 330 n); score: 1.000 Intron 2 361128 361054 ( 75 n); Pd: 0.713 (s: 1.00), Pa: 0.948 (s: 1.00) Exon 3 361053 360985 ( 69 n); cDNA 344 412 ( 69 n); score: 1.000 Intron 3 360984 360915 ( 70 n); Pd: 0.974 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 4 360914 360828 ( 87 n); cDNA 413 499 ( 87 n); score: 1.000 Intron 4 360827 360761 ( 67 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 360760 360673 ( 88 n); cDNA 500 587 ( 88 n); score: 1.000 Intron 5 360672 360534 ( 139 n); Pd: 0.996 (s: 1.00), Pa: 0.856 (s: 0.98) Exon 6 360533 360412 ( 122 n); cDNA 588 709 ( 122 n); score: 0.992 Intron 6 360411 360330 ( 82 n); Pd: 0.968 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 7 360329 360225 ( 105 n); cDNA 710 814 ( 105 n); score: 1.000 Intron 7 360224 357248 (2977 n); Pd: 0.997 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 8 357247 357204 ( 44 n); cDNA 815 858 ( 44 n); score: 1.000 Intron 8 357203 357124 ( 80 n); Pd: 0.995 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 9 357123 357054 ( 70 n); cDNA 859 928 ( 70 n); score: 1.000 Intron 9 357053 356976 ( 78 n); Pd: 0.983 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 10 356975 356872 ( 104 n); cDNA 929 1032 ( 104 n); score: 1.000 Intron 10 356871 356756 ( 116 n); Pd: 0.996 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 11 356755 356312 ( 444 n); cDNA 1033 1476 ( 444 n); score: 1.000 MATCH OSchr10-v3- 37988725+ 0.999 1419 0.961 C PGS_OSchr10-v3-_37988725+ (361553 361541,361458 361129,361053 360985,360914 360828,360760 360673,360533 360412,360329 360225,357247 357204,357123 357054,356975 356872,356755 356312) Alignment (genomic DNA sequence = upper lines): CTTGCCTCTT CCGGTGAGTA TTTGCTTTCC TTTTATGCTC TTTTCTGCTA TATACTTTGA 361494 |||||||||| ||| CTTGCCTCTT CCG....... .......... .......... .......... .......... 13 TCTGCTGATG CCATCTATGT TTAATAATTC CATAGGGTGA TGTTGATGTC ATTTGTGGTG 361434 ||||| |||||||||| |||||||||| .......... .......... .......... .....GGTGA TGTTGATGTC ATTTGTGGTG 38 GGCCACCATG CCAAGGAATA AGTGGTTTCA ATCGGTTCAG AAACCGCAAA GAGCCACTAA 361374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCACCATG CCAAGGAATA AGTGGTTTCA ATCGGTTCAG AAACCGCAAA GAGCCACTAA 98 AAGACGAGAA AAACAAACAG ATGGTGACAT TCATGGATAT TGTGGCATAC CTGAAGCCTA 361314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACGAGAA AAACAAACAG ATGGTGACAT TCATGGATAT TGTGGCATAC CTGAAGCCTA 158 AGTATGTCCT GATGGAAAAT GTTGTAGACA TACTGAAGTT TGCAGATGGT TACCTTGGAC 361254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGTCCT GATGGAAAAT GTTGTAGACA TACTGAAGTT TGCAGATGGT TACCTTGGAC 218 GTTATGCCTT GAGCCGTCTG GTGGCTATGA AGTACCAAGC ACGACTTGGA ATGATGGTTG 361194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATGCCTT GAGCCGTCTG GTGGCTATGA AGTACCAAGC ACGACTTGGA ATGATGGTTG 278 CAGGTTGTTA TGGCTTGCCA CAATTTAGGA TGCGTGTGTT CCTCTGGGGA GCTCTTCCTA 361134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGTTGTTA TGGCTTGCCA CAATTTAGGA TGCGTGTGTT CCTCTGGGGA GCTCTTCCTA 338 CCATGGTTTG TTTCCATTGC ATTTGTGAAC ATTTGGTAGT GTTTGATCGG AACAGTGACC 361074 ||||| CCATG..... .......... .......... .......... .......... .......... 343 AGGTGCATTT GTTAATGTAG GTGCTGCCAA AGTATCCGCT TCCCACTCAT AATGTTGTTG 361014 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTGCTGCCAA AGTATCCGCT TCCCACTCAT AATGTTGTTG 383 TCCGTGGTGG TGCCCCAAAT GCTTTTTCTG TAAGTCTGAC CATAACTCTA AATTCCATTG 360954 |||||||||| |||||||||| ||||||||| TCCGTGGTGG TGCCCCAAAT GCTTTTTCT. .......... .......... .......... 412 AAAGTCTCCG TATTCTGACT AGCTTGATCT TGCTTGCAGC AAAGTATTGT TGCATACGAT 360894 | |||||||||| |||||||||| .......... .......... .......... .........C AAAGTATTGT TGCATACGAT 433 GAAACACAGA AGCCAACATT GAAAAATGCA CTGCTGCTTG GCGATGCAAT TTCGGATTTG 360834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACACAGA AGCCAACATT GAAAAATGCA CTGCTGCTTG GCGATGCAAT TTCGGATTTG 493 CCAGAGGCAA GTGTTTCATC ATCTATTAAT ACGTTTCTTG ACCTGCAACT GCAATCTTAC 360774 |||||| CCAGAG.... .......... .......... .......... .......... .......... 499 CCCTTATCTT CAGGTAAACA ACCATCAGCC TAATGAAGTG ATGGAATATG GTTCTTCCCC 360714 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTAAACA ACCATCAGCC TAATGAAGTG ATGGAATATG GTTCTTCCCC 546 CAAAACAGAA TTCCAGCGCT ATATCCGGCT TAGCCGTAAA GGTAATAAAA CAACCTCTAA 360654 |||||||||| |||||||||| |||||||||| |||||||||| | CAAAACAGAA TTCCAGCGCT ATATCCGGCT TAGCCGTAAA G......... .......... 587 TAGCTATCAT TTGTGTGCTT TGAATATGAT GGGTGGGTTT ATTTTTGTTA TCAATGATTT 360594 .......... .......... .......... .......... .......... .......... 587 TTTCCCTTAC ATTTCACCCT GTACACCAAG TTTAATTCAT TTTTTCCCCA AATGTTCTAG 360534 .......... .......... .......... .......... .......... .......... 587 AAATGCTGGA TAGTTCTTTT GAAGGGAAGG ATGGTCCAGA TCTAGGCAAG CTTTTGGATC 360474 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| AAATGCTGGA TAGTTCTTTT GAAGGGAAGG ATGGTCGAGA TCTAGGCAAG CTTTTGGATC 647 ACCAGCCCTT AAAGCTAAAT AAGGATGACC ATGAGCGTGT GCAGCAAATT CCAGTAAAGA 360414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGCCCTT AAAGCTAAAT AAGGATGACC ATGAGCGTGT GCAGCAAATT CCAGTAAAGA 707 AGGTTGTCAG TTGTACAGCT TTGGTCCTTT GTGAACTTGT CCACTCATTC TTTCTGCAGT 360354 || AG........ .......... .......... .......... .......... .......... 709 CATAATCAAT TTACTGTGTT TCAGGGAGCC AACTTCCGGG ACCTGAAGGG TGTCAGGGTT 360294 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGAGCC AACTTCCGGG ACCTGAAGGG TGTCAGGGTT 745 GGGGCAAACA ACATCGTGGA GTGGGATCCA GACGTTCCCC GTGTATATTT ATCTTCTGGC 360234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGCAAACA ACATCGTGGA GTGGGATCCA GACGTTCCCC GTGTATATTT ATCTTCTGGC 805 AAGCCTTTGG TAAGTGTTCC GTGCTCTCCC CATTGTTGTG AATTGTTTGC TGCATCTAGT 360174 ||||||||| AAGCCTTTG. .......... .......... .......... .......... .......... 814 ATCTGCTGCT TAGTATGCAG CTAGTGCCAT GCTGTTTGCA GTCACAAGGG GATGTATTTA 360114 .......... .......... .......... .......... .......... .......... 814 // intron part 360113 357354 (2760 n) not shown // //........ .......... .......... .......... .......... ........// TTGTAAGTGT ATAAAATAAC ACTATACGAT GCATGCCCGC GCAGATGCGC GGGCTATCTT 357294 .......... .......... .......... .......... .......... .......... 814 CCTAGTTGTT ACAATTGCTG AAGAGCTAGC TTGTCTGTGT GGCTAGGTTC CTGACTACGC 357234 |||| |||||||||| .......... .......... .......... .......... ......GTTC CTGACTACGC 828 GATGTCTTTC ATCAAAGGGA GATCACTGAA GTAAGTTGCA CAATATCTCT GGTTTCTTCT 357174 |||||||||| |||||||||| |||||||||| GATGTCTTTC ATCAAAGGGA GATCACTGAA .......... .......... .......... 858 CCTGCAGTAA AATTTGGAGT GCGATATATT TCTTACAAAT GTTGTTGTAG GCCATTTGGG 357114 |||||||||| .......... .......... .......... .......... .......... GCCATTTGGG 868 CGCTTGTGGT GGGATGAGAC GGTTCCTACA GTTGTGACCC GAGCAGAGCC ACACAACCAG 357054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTTGTGGT GGGATGAGAC GGTTCCTACA GTTGTGACCC GAGCAGAGCC ACACAACCAG 928 GTCCGATTGT CAAGAAAGTA TAGCAATTTC TACATCTGTG CATCCTTTCT CAACGTGTCT 356994 .......... .......... .......... .......... .......... .......... 928 GAATGTGCTT CTCTGCAGAT TATATTGCAT CCGAATCAGG CGAGAGTTCT GACCGTAAGG 356934 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AT TATATTGCAT CCGAATCAGG CGAGAGTTCT GACCGTAAGG 970 GAGAATGCAA GGTTGCAGGG GTTCCCAGAC TACTACAAGA TGTTTGGCCC TATCAAAGAG 356874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATGCAA GGTTGCAGGG GTTCCCAGAC TACTACAAGA TGTTTGGCCC TATCAAAGAG 1030 AAGTAAGCTT TGTCCCTTTC ACATCACATA TTATATTGAG TTGCACCGTC CATCAACAAT 356814 || AA........ .......... .......... .......... .......... .......... 1032 GGTGTCAACT CTAAATGTTG GGTTCTAACT GGAAGGCTGT GTTTGATGGC GGTTGCAGGT 356754 || .......... .......... .......... .......... .......... ........GT 1034 ATATACAAGT TGGCAATGCA GTTGCTGTAC CTGTTGCTCG TGCATTGGGT TACTCCCTTG 356694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATACAAGT TGGCAATGCA GTTGCTGTAC CTGTTGCTCG TGCATTGGGT TACTCCCTTG 1094 GGCTTGCATA CCAGCGTGAG TCGGAGGGGA GCAGCCCTCT GTTCGTCCTG CCAGACAGCT 356634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTGCATA CCAGCGTGAG TCGGAGGGGA GCAGCCCTCT GTTCGTCCTG CCAGACAGCT 1154 TCACGGAAGT CGGGCGACAG GCGGCGCCGG CAAGAGCATC CTCTGTTGGT ATCCCTGTTG 356574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACGGAAGT CGGGCGACAG GCGGCGCCGG CAAGAGCATC CTCTGTTGGT ATCCCTGTTG 1214 GCGAGGTTGT TGAGCAATAG AACACTTGGG TAGAGTAGAG TCATTATTTG GTTCGATTCG 356514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGGTTGT TGAGCAATAG AACACTTGGG TAGAGTAGAG TCATTATTTG GTTCGATTCG 1274 AACCGATCCG GGAGAATGTT GTTTAAAATC ACTGATCAGC CACCTTGGTG CTGTCATGTG 356454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCGATCCG GGAGAATGTT GTTTAAAATC ACTGATCAGC CACCTTGGTG CTGTCATGTG 1334 ATCACCATCA ATGTTATTAT TGATTGATTG AATGTTGTAA GGCTGGTGGC ACTCCTGCTT 356394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACCATCA ATGTTATTAT TGATTGATTG AATGTTGTAA GGCTGGTGGC ACTCCTGCTT 1394 GAGTGCTTGT TGTACTTGTA GCATAAGGTC CAAAACATTC ATTCATATCC TTCTATGGGC 356334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGCTTGT TGTACTTGTA GCATAAGGTC CAAAACATTC ATTCATATCC TTCTATGGGC 1454 TATCTTATGT CTGTATCCTG AT 356312 |||||||||| |||||||||| || TATCTTATGT CTGTATCCTG AT 1476 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32988836|dbj|AK103627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133O13, full insert sequence 1 GACCCTTGTT CATTCCTCCT CGCCTCGCCT CGCATCTCGG CTCGCCGCGC CGTCAGATCC 61 CTCGCCTCCG ATGGCGCACC GCCGCCTCTG ACCAACCACC GCCCCCACCG CCGCCCACAT 121 GCCGCCGCCC ATGCTCGCGG ATGCGGCGGC GGCGGCGCCC TACTCCTCCT CATCATGCTC 181 ATCCAACTCC AGCTCTTCCT CCTCCTCCTC CGCGATCTGG TCGCGCCGCC GCGACGAGAT 241 CACCTTCGAC CGCCTCGACA AGTTCTGGAG TGCCTTGTCG CCTCAAGCAC GGCATGAGCT 301 CCTCAGGATC GATAAGCAGA CTCTCATTGA GCATGCACGC AGGAATTTGT ACTGTTCAAG 361 GTGCGATGGG CTGCTTTTAG AAAGTTTCAC ACAAATGGTC ATGCATGGGA AGTTACTGCA 421 ACAAAAAGGT CCAGGTGTTG TACAAGATGA TTCTTGGGGA GGCCTTTCGA CAACAAAGGA 481 TGGCCTCCTG ACTCTTCTTG ACTGCTTCAT AAATACAAAT TCCCTTCATG TACTCCAGAA 541 TATATTTGAC AATGCACGGG CGAGGGAGCG TGAACGGGAA ATGCTTTATC CTGATGCATG 601 TGGTGGAGGA GAAAGAGGGT GGATTAGCCC AGTAATAGCT AATTATGGCA GGGGGCATGG 661 AACACGAGAC ACATGTGCTT TGCACACTGC ACGCCTTTCT TGTGATGCTC TGGTGGGTTA 721 CTGGTTTGAC CTGTGTGAAG AAACTAGATC ATCTCTTCTG CGGATGAGGG AAGAAGATTT 781 CATTGAAAGA CTTATGCATA GGTTCGACAG CAAAAGATTT TGCAGAGATT GCCGAAGGAA 841 TGTCATTCGT GAATTTAAGG AACTGAAAGA ATTAAAGCGT CTGCGACGGG AACATCACTG 901 CACTAGCTGG TTCTGCATTA CTGATACAGC TTTCCGGTGT GAGGTGTTTG AGGATGCTGT 961 CTTAGTTGAT TGCCGCCAAT CTTTCTTGGA TCAAGATAAG TCCTATAATC GTTTTGAGTT 1021 TGCTGTTGGA ACAGAAAAAG GGAAATCTGA TATACTAGGA TTTGAAGCTG TGGGGATGAA 1081 TGGGCAAGTG CACAGGAAGG GCCTTGATCT TGACCAGTTT GAAGATTATT TTGTTACTCT 1141 GAGAGCGCAT TATGCGGATA ACAAGAACAC AGATTTCTAT GTGAAGGCCC ATGCCTTGAA 1201 GGGCCAATCA TGTGTTCACC GCAGGCTGAT CGTGGGGGAT GGGTTTGTGA CAATTACTAA 1261 GGGAGAAAGC ATTCAAAGTT TCTTTGAGCA TGCTGAAGAA GCTGAGGAAG AGGATGAAGA 1321 TGATGCTATG GACAGGGATG GAAATGATAC TGATGTCGAT GGTGTTCATC CACAGAAGCA 1381 TGCTAAGAGT CCTGAACTTG CCAGAGAGTT TCTTTTGGAT GCTGCTGCAG TGATATTCAA 1441 AGAACAGGTT GAAAAATCTT TGAGGGAAGC CACGGCACAA CAAAATGCAC ATAGCGTATT 1501 TGTGTCCCTT GCATTAAAAT TGTTGGAAGA GCGGGTTCAT GTTGCCTGCA AAGAAATAAT 1561 TACATTGGAA AAACAGACCA AGCTTCTTGA GGAAGAAGAG AAAGAAAAGC GTGAAGAAGA 1621 AGAGCGCAGG GAGAGGAGGA GAACAAAGGA GAGAGAAAAG AAGCTTAGAA GAAAAGAACG 1681 TTTGAAAGAA AAGGAAAAGG AGAAAGAAAA GATACCAGTT CAATTGAAAC CTTACATTGG 1741 TACCTCGTCA TCACCCCTGA GCAACTCAGC AACACCAATT AATGATCAGT CACCAGATAT 1801 TGCCCACTCC AAATACTCAG CTAGCGATGA TGAAGATAAA GATAGTATTG TGGTCACGGA 1861 ATCGTTCTCT CCTGATACCT GTGTTGATCA ATCTCTAACA AGGGAAAGTG ATGGACAAAG 1921 CAATGAGTTT CATTGCAGTA CAACACTGGA ATTTATTCCA TCAGATTGCA ATGGTTCTTT 1981 CATGTGTGAA CAATCTACAT CCTCAAGGAG GAAACTCAGA TTTAGAAGGG ATTCCCTTCA 2041 AGAACAGACC ACTGGTTTTT GGTATGAAGA TTGCCAAGAT GACACTGGGG GTGTTGGAAA 2101 TATTCACTGG CAATCTAGGG AGAGGGCAAG GAATGCAGGT AGAGGCTGCA ACTCTTTGTT 2161 CAGTGCGAAT AACCGGACAA GAGAAAGGTA TGAGTACAAT GCCTGCAGTT GTGGCCAGCA 2221 GGAAGATTAT GGGTATTTTT CTCCAACAGC TAGATCAAGT AGAGAGATGA AGATGTCCAG 2281 GAAAACAATG GTTGAGAAGC CCTGGTTACA GTACCGCAGG TGCTATCCAT TGGATAGCTT 2341 CATAGTGTCA AAAGGAAGCC GAGTTGGTAG TACGCCAAAC AAGAATGCAG CTCCAAAACA 2401 AGTATGGGAG CCAATGGATG CTAGAAAGAA AGCTAGCTTA GGGAGTTCGA ATGGTTCTTC 2461 TGAAACAGTT AGCGGTGTTG ATCGATCCAA TCAAGTGGGG TGTTCAAAGG ATATTGTCAA 2521 TTGTAGCCAA ATACTTGGCT CGGAGCATGA AGAACTAGCT GAAGCTTCCT CTGATAGATC 2581 TGAAGAAGCT TGCAAATCGA TAACAGATCA GCCATGTGAA AGCAGTGAAA ATAATCAAGC 2641 TGCTTGCAAT AGTGAACCTC CTGTGGTGAA CAAGCCAGAC AGCTGCTTTA CCAAAGATGG 2701 TGGTCAGACA GCAAACATGA CCAGTTCAGA TAGCTCTTCA TGTCTAAGCG AGGGAGACAG 2761 AGATAGTAGC ATGAGCAGCA TGACCTCATT GAGTGCTCAG AATCCGGAAT CCTCGTCTAC 2821 TTCTGATTCA GAAGGATCTT CAGAAAGGAA CAATAGCAAC CCAGGCAATC CACCAACCAA 2881 GAACGGTTCG CGTTCATTAC TTGAAATGTG CGCAGGAAAT GGTTTCAGAG AATACCAGCC 2941 ACAGAATATT CACCCTTCTG ATGGCAATCA ATTTGGGTTT GGTGTGACCC CTTTCCAGGA 3001 GCAGCTGTTA CATCAGCAAA AGATTCATGC AGCTCCATAC CCGTCAACCT TGATGGGTTT 3061 CCATAATCAT CACATGTCAG TTCCAACAAA TGGATACCTA GCATACCCTC AACCTGGTCA 3121 TTTCTACCCA AATGCTGTTG GATATGGTGT GGCTGGAAAC CAATGTGTTG ACTTCCCAAT 3181 GCAGTACAGT AATGTGCATC CTTATGCAGG TCCTGAATTT GGTTATGTGC CTGCACAGCC 3241 AGTCCATAAG ACTCCGGTGA ACTTTAATGC CATGGTGCCA ACTGCTGCGC TCTTTAGAAA 3301 TGGAGCGCCA GAAGTCATAA ACCCTGTCAT TGTAAAACCA GACAGGCAGC ATCGCCATAC 3361 CCTTCCTCCT GAGCCGAAGC GGGTGGATCC TGATCCTCAG AACGGCTGTT CAGAAGATAA 3421 CAAGAAGCCG CAAGATGGCT CTGTGCCTTT CTCGTTGTTC CATTTCAACC TTCCCATATC 3481 CTCGCCTGCC CAGGCATCAT CTGAAGACGA GGTGAGTGGA GGATGTTTGG CGTCGAGATC 3541 GCCAACTCCA AGTGCTCAAA AAGCTCAGCC TTGCTCAAGG GAGGAGACCA ACATAAAGGA 3601 GTACAACCTG TTCTCGGCAA GGACTGGAGT GGAATTTCCC TTCTTCTAGA CAACAGACGC 3661 GCCTATTATT TGGCACAGAA CAATACATAG CGAGTGATTT GTATTCTCCA AAAAAACAAA 3721 AACAAAATAA GTTACCTCGA GGTTTTTACC GTGTTCCCTC GAATATTTAT TTATTTCTTC 3781 TTCCATTTGT TTTGGTTGCC CTTGTGTGTA AGGAAATTGC AAAGATAGTG AGTGGTATAG 3841 TTTCTAAATT TTGAGATATG TTAAATGTTT GTTGTCCCGT TTCC Genomic Template: file=OSchr10, strand=-, from=395353, to=385469, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 395054 394793 ( 262 n); cDNA 1 262 ( 262 n); score: 0.992 Intron 1 394792 393013 (1780 n); Pd: 0.000 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 2 393012 392734 ( 279 n); cDNA 263 541 ( 279 n); score: 0.996 Intron 2 392733 392531 ( 203 n); Pd: 0.976 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 392530 392271 ( 260 n); cDNA 542 801 ( 260 n); score: 1.000 Intron 3 392270 389892 (2379 n); Pd: 0.983 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 389891 389750 ( 142 n); cDNA 802 943 ( 142 n); score: 1.000 Intron 4 389749 389536 ( 214 n); Pd: 0.998 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 5 389535 389164 ( 372 n); cDNA 944 1315 ( 372 n); score: 1.000 Intron 5 389163 389060 ( 104 n); Pd: 0.985 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 6 389059 388928 ( 132 n); cDNA 1316 1447 ( 132 n); score: 1.000 Intron 6 388927 388292 ( 636 n); Pd: 0.990 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 7 388291 388163 ( 129 n); cDNA 1448 1576 ( 129 n); score: 1.000 Intron 7 388162 388054 ( 109 n); Pd: 0.898 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 8 388053 385770 (2284 n); cDNA 1577 3884 (2308 n); score: 0.973 MATCH OSchr10-v3- 32988836+ 0.983 3860 0.994 C PGS_OSchr10-v3-_32988836+ (395054 394793,393012 392734,392530 392271,389891 389750,389535 389164,389059 388928,388291 388163,388053 385770) Alignment (genomic DNA sequence = upper lines): AACCCTTGTT CATTCCTCCT CGCCTCGCCT CGCATCTCGG CTCGCCGCGC CGTCAGATCC 394995 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCCTTGTT CATTCCTCCT CGCCTCGCCT CGCATCTCGG CTCGCCGCGC CGTCAGATCC 60 CTCGCCTCCG ATGGCGCACC GCCGCCTCTG ACCAACCACC GCCCCCACCG CCGCCCACAT 394935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGCCTCCG ATGGCGCACC GCCGCCTCTG ACCAACCACC GCCCCCACCG CCGCCCACAT 120 GCCGCCGCCC ATGCTCGCGG ATGCGGCGGC GGCGGCGCCC TGCTCCTCCT CATCATGCTC 394875 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCCGCCGCCC ATGCTCGCGG ATGCGGCGGC GGCGGCGCCC TACTCCTCCT CATCATGCTC 180 ATCCAACTCC AGCTCTTCCT CCTCCTCCTC CGCGATCTGG TCGCGCCGCC GCGACGAGAT 394815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAACTCC AGCTCTTCCT CCTCCTCCTC CGCGATCTGG TCGCGCCGCC GCGACGAGAT 240 CACCTTCGAC CGCCTCGACA AGGTATCTCC CCACGCCCCA CGCCCCCAAG GACTCAGCTC 394755 |||||||||| |||||||||| || CACCTTCGAC CGCCTCGACA AG........ .......... .......... .......... 262 GCCTCGATCG GATCTGGGGG CTTCGCCGTC TAGCTCACGC GGATCTGTCT GACTTTTTCA 394695 .......... .......... .......... .......... .......... .......... 262 // intron part 394694 393075 (1620 n) not shown // //........ .......... .......... .......... .......... ........// AAAATCATAT TTTACTAACA GAACCGATCA TTTTTATTGA TGTGAGTTCC ATTTTTTCCC 393015 .......... .......... .......... .......... .......... .......... 262 AGTTCTGGAG TGCCTTGTCG CCTCAAGCAC GGCATGAGCT CCTCAGGATC GATAAGCAGA 392955 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..TTCTGGAG TGCCTTGTCG CCTCAAGCAC GGCATGAGCT CCTCAGGATC GATAAGCAGA 320 CTCTCATTGA GCATGCACGC AGGAATTTGT ACTGTTCAAG GTGCAATGGG CTGCTTTTAG 392895 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| CTCTCATTGA GCATGCACGC AGGAATTTGT ACTGTTCAAG GTGCGATGGG CTGCTTTTAG 380 AAAGTTTCAC ACAAATGGTC ATGCATGGGA AGTTACTGCA ACAAAAAGGT CCAGGTGTTG 392835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTTCAC ACAAATGGTC ATGCATGGGA AGTTACTGCA ACAAAAAGGT CCAGGTGTTG 440 TACAAGATGA TTCTTGGGGA GGCCTTTCGA CAACAAAGGA TGGCCTCCTG ACTCTTCTTG 392775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAGATGA TTCTTGGGGA GGCCTTTCGA CAACAAAGGA TGGCCTCCTG ACTCTTCTTG 500 ACTGCTTCAT AAATACAAAT TCCCTTCATG TACTCCAGAA TGTAAGCCTG AATAACACCT 392715 |||||||||| |||||||||| |||||||||| |||||||||| | ACTGCTTCAT AAATACAAAT TCCCTTCATG TACTCCAGAA T......... .......... 541 TATGGTTTTA TACTTTTCTA TTTTTCTACT TGTTCTTGTT GGGTTAGCAA TTTATTGAGA 392655 .......... .......... .......... .......... .......... .......... 541 ACACTACTGA AGTTTTCTCT AGACCATGCC TGTTCATTTA AAAGAATATT TGCATGATGC 392595 .......... .......... .......... .......... .......... .......... 541 TGGGTTAGGG TGCACTAATT TAACCATTCT AATTTTCTCC GAATTAATTT GACTCTTTTA 392535 .......... .......... .......... .......... .......... .......... 541 ATAGATATTT GACAATGCAC GGGCGAGGGA GCGTGAACGG GAAATGCTTT ATCCTGATGC 392475 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATATTT GACAATGCAC GGGCGAGGGA GCGTGAACGG GAAATGCTTT ATCCTGATGC 597 ATGTGGTGGA GGAGAAAGAG GGTGGATTAG CCCAGTAATA GCTAATTATG GCAGGGGGCA 392415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTGGTGGA GGAGAAAGAG GGTGGATTAG CCCAGTAATA GCTAATTATG GCAGGGGGCA 657 TGGAACACGA GACACATGTG CTTTGCACAC TGCACGCCTT TCTTGTGATG CTCTGGTGGG 392355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAACACGA GACACATGTG CTTTGCACAC TGCACGCCTT TCTTGTGATG CTCTGGTGGG 717 TTACTGGTTT GACCTGTGTG AAGAAACTAG ATCATCTCTT CTGCGGATGA GGGAAGAAGA 392295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTGGTTT GACCTGTGTG AAGAAACTAG ATCATCTCTT CTGCGGATGA GGGAAGAAGA 777 TTTCATTGAA AGACTTATGC ATAGGTGAGT GCAACCAAGT ACAGTTTGTT TGATACAAGA 392235 |||||||||| |||||||||| |||| TTTCATTGAA AGACTTATGC ATAG...... .......... .......... .......... 801 TTAAAGATCA TGAAATTGAT GCACAGTTAA GCATGTGAAC AAATCTATCT AGCTGGAGTA 392175 .......... .......... .......... .......... .......... .......... 801 // intron part 392174 389955 (2220 n) not shown // //........ .......... .......... .......... .......... ........// GCTCTTCACA GGCTGGTTTG GTGTGTAATA TTTAGCTAAT TCTGTGGATG AATATCTGGA 389895 .......... .......... .......... .......... .......... .......... 801 CAGGTTCGAC AGCAAAAGAT TTTGCAGAGA TTGCCGAAGG AATGTCATTC GTGAATTTAA 389835 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTTCGAC AGCAAAAGAT TTTGCAGAGA TTGCCGAAGG AATGTCATTC GTGAATTTAA 858 GGAACTGAAA GAATTAAAGC GTCTGCGACG GGAACATCAC TGCACTAGCT GGTTCTGCAT 389775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAACTGAAA GAATTAAAGC GTCTGCGACG GGAACATCAC TGCACTAGCT GGTTCTGCAT 918 TACTGATACA GCTTTCCGGT GTGAGGTAAG GATGGTGCTC CTTTCTATAT GCACTCTCAC 389715 |||||||||| |||||||||| ||||| TACTGATACA GCTTTCCGGT GTGAG..... .......... .......... .......... 943 AATTGTTCTT TCTTTGTTTC TGCTTTCTCT TCTTCGAATA CACTCAGCTA GCAAAACCTT 389655 .......... .......... .......... .......... .......... .......... 943 ATAAGGGTAA AACTATGGAA AATAAGACTA AAAGGAGTTG CATTCCCATT TTTAATTGCA 389595 .......... .......... .......... .......... .......... .......... 943 CAGTAGATGA CATGGAGTTT GCCTGTAGGT GGTTAACATC TGGCATTTTA TATTTTCAGG 389535 | .......... .......... .......... .......... .......... .........G 944 TGTTTGAGGA TGCTGTCTTA GTTGATTGCC GCCAATCTTT CTTGGATCAA GATAAGTCCT 389475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGAGGA TGCTGTCTTA GTTGATTGCC GCCAATCTTT CTTGGATCAA GATAAGTCCT 1004 ATAATCGTTT TGAGTTTGCT GTTGGAACAG AAAAAGGGAA ATCTGATATA CTAGGATTTG 389415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATCGTTT TGAGTTTGCT GTTGGAACAG AAAAAGGGAA ATCTGATATA CTAGGATTTG 1064 AAGCTGTGGG GATGAATGGG CAAGTGCACA GGAAGGGCCT TGATCTTGAC CAGTTTGAAG 389355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTGTGGG GATGAATGGG CAAGTGCACA GGAAGGGCCT TGATCTTGAC CAGTTTGAAG 1124 ATTATTTTGT TACTCTGAGA GCGCATTATG CGGATAACAA GAACACAGAT TTCTATGTGA 389295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTTTGT TACTCTGAGA GCGCATTATG CGGATAACAA GAACACAGAT TTCTATGTGA 1184 AGGCCCATGC CTTGAAGGGC CAATCATGTG TTCACCGCAG GCTGATCGTG GGGGATGGGT 389235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCCCATGC CTTGAAGGGC CAATCATGTG TTCACCGCAG GCTGATCGTG GGGGATGGGT 1244 TTGTGACAAT TACTAAGGGA GAAAGCATTC AAAGTTTCTT TGAGCATGCT GAAGAAGCTG 389175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGACAAT TACTAAGGGA GAAAGCATTC AAAGTTTCTT TGAGCATGCT GAAGAAGCTG 1304 AGGAAGAGGA TGTAAGCTCA TTTCTTAAGT AATAAGATTA GGATGATCAG AACATTTGTT 389115 |||||||||| | AGGAAGAGGA T......... .......... .......... .......... .......... 1315 AGTCCATGTT GATGGTCTGC CAATTCATAT AGTCTAATTT GTTATACATG AGCAGGAAGA 389055 ||||| .......... .......... .......... .......... .......... .....GAAGA 1320 TGATGCTATG GACAGGGATG GAAATGATAC TGATGTCGAT GGTGTTCATC CACAGAAGCA 388995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGCTATG GACAGGGATG GAAATGATAC TGATGTCGAT GGTGTTCATC CACAGAAGCA 1380 TGCTAAGAGT CCTGAACTTG CCAGAGAGTT TCTTTTGGAT GCTGCTGCAG TGATATTCAA 388935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTAAGAGT CCTGAACTTG CCAGAGAGTT TCTTTTGGAT GCTGCTGCAG TGATATTCAA 1440 AGAACAGGTA GTGTATATCA TGCAATTTCT AAGTCCTAAT CACTAAAAGA TACATGTTTT 388875 ||||||| AGAACAG... .......... .......... .......... .......... .......... 1447 TTTTGTGATA TTAGCTGTAT ATATAGCAAA CACTTTTCTA AATTTATGAT CTGCGTCTGA 388815 .......... .......... .......... .......... .......... .......... 1447 // intron part 388814 388395 (420 n) not shown // //........ .......... .......... .......... .......... ........// GTGTCAAGCT ATTGTTGTTT CCTCTTTTCT TTTTAAGATA GTCGTACTTA AGCCTGCAGC 388335 .......... .......... .......... .......... .......... .......... 1447 ATCATCTCGT GTTGACATAG GAAACATTGT TTTTCCTGTG AAGGTTGAAA AATCTTTGAG 388275 ||||||| |||||||||| .......... .......... .......... .......... ...GTTGAAA AATCTTTGAG 1464 GGAAGCCACG GCACAACAAA ATGCACATAG CGTATTTGTG TCCCTTGCAT TAAAATTGTT 388215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGCCACG GCACAACAAA ATGCACATAG CGTATTTGTG TCCCTTGCAT TAAAATTGTT 1524 GGAAGAGCGG GTTCATGTTG CCTGCAAAGA AATAATTACA TTGGAAAAAC AGGTGAGCTA 388155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GGAAGAGCGG GTTCATGTTG CCTGCAAAGA AATAATTACA TTGGAAAAAC AG........ 1576 CACATACTTT GTTGTGTAGA AGAAGAGAGA GGGAGCAACT TTTGTTAGGA TTTGTTGTGC 388095 .......... .......... .......... .......... .......... .......... 1576 CTTAGTTGAC ATGTAGTAAA TTCGATTAAC TTGCCTTGTA GACCAAGCTT CTTGAGGAAG 388035 ||||||||| |||||||||| .......... .......... .......... .......... .ACCAAGCTT CTTGAGGAAG 1595 AAGAGAAAGA AAAGCGTGAA GAAGAAGAGC GCAGGGAGAG GAGGAGAACA AAGGAGAGAG 387975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGAAAGA AAAGCGTGAA GAAGAAGAGC GCAGGGAGAG GAGGAGAACA AAGGAGAGAG 1655 AAAAGAAGCT TAGAAGAAAA GAACGTTTGA AAGAAAAGGA AAAGGAGAAA GAAAAGATAC 387915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAAGCT TAGAAGAAAA GAACGTTTGA AAGAAAAGGA AAAGGAGAAA GAAAAGATAC 1715 CAGTTCAATT GAAACCTTAC ATTGGTACCT CGTCATCACC CCTGAGCAAC TCAGCAACAC 387855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTCAATT GAAACCTTAC ATTGGTACCT CGTCATCACC CCTGAGCAAC TCAGCAACAC 1775 CAATTAATGA TCAGTCACCA GATATTGCCC ACTCCAAATA CTCAGCTAGC GATGATGAAG 387795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTAATGA TCAGTCACCA GATATTGCCC ACTCCAAATA CTCAGCTAGC GATGATGAAG 1835 ATAAAGATAG TATTGTGGTC ACGGAATCGT TCTCTCCTGA TACCTGTGTT GATCAATCTC 387735 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAGATAG TATTGTGGTC ACGGAATCGT TCTCTCCTGA TACCTGTGTT GATCAATCTC 1895 TAACAAGGGA AAGTGATGGA CAAAGCAATG AGTTTCATTG CAGTACAACA CTGGAATTTA 387675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACAAGGGA AAGTGATGGA CAAAGCAATG AGTTTCATTG CAGTACAACA CTGGAATTTA 1955 TTCCATCAGA TTGCAATGGT TCTTTCATGT GTGAACAATC TACATCCTCA AGGAGGAAAC 387615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCATCAGA TTGCAATGGT TCTTTCATGT GTGAACAATC TACATCCTCA AGGAGGAAAC 2015 TCAGATTTAG AAGGGATTCC CTTCAAGAAC AGACCACTGG TTTTTGGTAT GAAGATTGCC 387555 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGATTTAG AAGGGATTCC CTTCAAGAAC AGACCACTGG TTTTTGGTAT GAAGATTGCC 2075 AAGATGACAC TGGGGGTGTT GGAAATATTC ACTGGCAATC TAGGGAGAGG GCAAGGAATG 387495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGACAC TGGGGGTGTT GGAAATATTC ACTGGCAATC TAGGGAGAGG GCAAGGAATG 2135 CAGGTAGAGG CTGCAACTCT TTGTTCAGTG CGAATAACCG GACAAGAGAA AGGTATGAGT 387435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGTAGAGG CTGCAACTCT TTGTTCAGTG CGAATAACCG GACAAGAGAA AGGTATGAGT 2195 ACAATGCCTG CAGTTGTGGC CAGCAGGAAG ATTATGGGTA TTTTTCTCCA ACAGCTAGAT 387375 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATGCCTG CAGTTGTGGC CAGCAGGAAG ATTATGGGTA TTTTTCTCCA ACAGCTAGAT 2255 CAAGTAGAGA GATGAAGATG TCCAGGAAAA CAATGGTTGA GAAGCCCTGG TTACAGTACC 387315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTAGAGA GATGAAGATG TCCAGGAAAA CAATGGTTGA GAAGCCCTGG TTACAGTACC 2315 GCAGGTGCTA TCCATTGGAT AGCTTCATAG TGTCAAAAGG AAGCCGAGTT GGTAGTACGC 387255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGGTGCTA TCCATTGGAT AGCTTCATAG TGTCAAAAGG AAGCCGAGTT GGTAGTACGC 2375 CAAACAAGAA TGCAGCTCCA AAACAAGTAT GGGAGCCAAT GGATGCTAGA AAGAAAGCTA 387195 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACAAGAA TGCAGCTCCA AAACAAGTAT GGGAGCCAAT GGATGCTAGA AAGAAAGCTA 2435 GCTTAGGGAG TTCGAATGGT TCTTCTGAAA CAGTTAGCGG TGTTGATCGA TCCAATCAAG 387135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTAGGGAG TTCGAATGGT TCTTCTGAAA CAGTTAGCGG TGTTGATCGA TCCAATCAAG 2495 TGGGGTGTTC AAAGGATATT GTCAATTGTA GCCAAATACT TGGCTCGGAG CAT---G-A- 387080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| | | TGGGGTGTTC AAAGGATATT GTCAATTGTA GCCAAATACT TGGCTCGGAG CATGAAGAAC 2555 -A---GAA-- -----C---T AG--CT---G AAGCTTGCAA ATCGATAACA GATCAGCCAT 387039 | ||| | | || || | |||||||||| |||||||||| |||||||||| TAGCTGAAGC TTCCTCTGAT AGATCTGAAG AAGCTTGCAA ATCGATAACA GATCAGCCAT 2615 GTGAAAGCAG TGAAAATAAT CAAGCTGCTT GCAATAGTGA ACCTCCTGTG GTGAACAAGC 386979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAAGCAG TGAAAATAAT CAAGCTGCTT GCAATAGTGA ACCTCCTGTG GTGAACAAGC 2675 CAGACAGCTG CTTTACCAAA GATGGTGGTC AGACAGCAAA CATGACCAGT TCAGATAGCT 386919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACAGCTG CTTTACCAAA GATGGTGGTC AGACAGCAAA CATGACCAGT TCAGATAGCT 2735 CTTCATGTCT AAGCGAGGGA GACAGAGATA GTAGCATGAG CAGCATGACC TCATTGAGTG 386859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCATGTCT AAGCGAGGGA GACAGAGATA GTAGCATGAG CAGCATGACC TCATTGAGTG 2795 CTCAGAATCC GGAATCCTCG TCTACTTCTG ATTCAGAAGG ATCTTCAGAA AGGAACAATA 386799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGAATCC GGAATCCTCG TCTACTTCTG ATTCAGAAGG ATCTTCAGAA AGGAACAATA 2855 GCAACCCAGG CAATCCACCA ACCAAGAACG GTTCGCGTTC ATTACTTGAA ATGTGCGCAG 386739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACCCAGG CAATCCACCA ACCAAGAACG GTTCGCGTTC ATTACTTGAA ATGTGCGCAG 2915 GAAATGGTTT CAGAGAATAC CAGCCACAGA ATATTCACCC TTCTGATGGC AATCAATTTG 386679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATGGTTT CAGAGAATAC CAGCCACAGA ATATTCACCC TTCTGATGGC AATCAATTTG 2975 GGTTTGGTGT GACCCCTTTC CAGGAGCAGC TGTTACATCA GCAAAAGATT CATGCAGCTC 386619 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTGGTGT GACCCCTTTC CAGGAGCAGC TGTTACATCA GCAAAAGATT CATGCAGCTC 3035 CATACCCGTC AACCTTGATG GGTTTCCATA ATCATCACAT GTCAGTTCCA ACAAATGGAT 386559 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACCCGTC AACCTTGATG GGTTTCCATA ATCATCACAT GTCAGTTCCA ACAAATGGAT 3095 ACCTAGCATA CCCTCAACCT GGTCATTTCT ACCCAAATGC TGTTGGATAT GGTGTGGCTG 386499 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTAGCATA CCCTCAACCT GGTCATTTCT ACCCAAATGC TGTTGGATAT GGTGTGGCTG 3155 GAAACCAATG TGTTGACTTC CCAATGCAGT ACAGTAATGT GCATCCTTAT GCAGGTCCTG 386439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACCAATG TGTTGACTTC CCAATGCAGT ACAGTAATGT GCATCCTTAT GCAGGTCCTG 3215 AATTTGGTTA TGTGCCTGCA CAGCCAGTCC ATAAGACTCC GGTGAACTTT AATGCCATGG 386379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGGTTA TGTGCCTGCA CAGCCAGTCC ATAAGACTCC GGTGAACTTT AATGCCATGG 3275 TGCCAACTGC TGCGCTCTTT AGAAATGGAG CGCCAGAAGT CATAAACCCT GTCATTGTAA 386319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAACTGC TGCGCTCTTT AGAAATGGAG CGCCAGAAGT CATAAACCCT GTCATTGTAA 3335 AACCAGACAG GCAGCATCGC CATACCCTTC CTCCTGAGCC GAAGCGGGTG GATCCTGATC 386259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCAGACAG GCAGCATCGC CATACCCTTC CTCCTGAGCC GAAGCGGGTG GATCCTGATC 3395 CTCAGAACGG CTGTTCAGAA GATAACAAGA AGCCGCAAGA TGGCTCTGTG CCTTTCTCGT 386199 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGAACGG CTGTTCAGAA GATAACAAGA AGCCGCAAGA TGGCTCTGTG CCTTTCTCGT 3455 TGTTCCATTT CAACCTTCCC ATATCCTCGC CTGCCCAGGC ATCATCTGAA GACGAGGTGA 386139 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCCATTT CAACCTTCCC ATATCCTCGC CTGCCCAGGC ATCATCTGAA GACGAGGTGA 3515 GTGGAGGATG TTTGGCGTCG AGATCGCCAA CTCCAAGTGC TCAAAAAGCT CAGCCTTGCT 386079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGAGGATG TTTGGCGTCG AGATCGCCAA CTCCAAGTGC TCAAAAAGCT CAGCCTTGCT 3575 CAAGGGAGGA GACCAACATA AAGGAGTACA ACCTGTTCTC TGCAAGGACT GGAGTGGAAT 386019 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CAAGGGAGGA GACCAACATA AAGGAGTACA ACCTGTTCTC GGCAAGGACT GGAGTGGAAT 3635 TTCCCTTCTT CTAGACAACA GACGCGCCTA TTATTTGGCA CAGAACAATA CATAGCGAGT 385959 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCTTCTT CTAGACAACA GACGCGCCTA TTATTTGGCA CAGAACAATA CATAGCGAGT 3695 GATTTGTATT CTCCAAAAAA ACAAAAACAA AATAAGTTAC CTCGAGGTTT TTACCGTGTT 385899 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTGTATT CTCCAAAAAA ACAAAAACAA AATAAGTTAC CTCGAGGTTT TTACCGTGTT 3755 CCCTCGAATA TTTATTTATT TCTTCTTCCA TTTGTTTTGG TTGCCCTTGT GTGTAAGGAA 385839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTCGAATA TTTATTTATT TCTTCTTCCA TTTGTTTTGG TTGCCCTTGT GTGTAAGGAA 3815 ATTGCAAAGA TAGTGAGTGG TATAGTTTCT AAATTTTGAG ATATGTTAAA TGTTTGTTGT 385779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCAAAGA TAGTGAGTGG TATAGTTTCT AAATTTTGAG ATATGTTAAA TGTTTGTTGT 3875 CCCGTTTTC 385770 ||||||| | CCCGTTTCC 3884 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32982518|dbj|AK072495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132L09, full insert sequence 1 TTGCAGTACA ACACTGGAAT TTATTCCATC AGATTGCAAT GGTTCTTTCA TGTGTGAACA 61 ATCTACATCC TCAAGGAGGA AACTCAGATT TAGAAGGGAT TCCCTTCAAG AACAGACCAC 121 TGGTTTTTGG TATGAAGATT GCCAAGATGA CACTGGGGGT GTTGGAAATA TTCACTGGCA 181 ATCTAGGGAG AGGGCAAGGA ATGCAGGTAG AGGCTGCAAC TCTTTGTTCA GTGCGAATAA 241 CCGGACAAGA GAAAGGTATG AGTACAATGC CTGCAGTTGT GGCCAGCAGG AAGATTATGG 301 GTATTTTTCT CCAACAGCTA GATCAAGTAG AGAGATGAAG ATGTCCAGGA AAACAATGGT 361 TGAGAAGCCC TGGTTACAGT ACCGCAGGTG CTATCCATTG GATAGCTTCA TAGTGTCAAA 421 AGGAAGCCGA GTTGGTAGTA CGCCAAACAA GAATGCAGCT CCAAAACAAG TATGGGAGCC 481 AATGGATGCT AGAAAGAAAG CTAGCTTAGG GAGTTCGAAT GGTTCTTCTG AAACAGTTAG 541 CGGTGTTGAT CGATCCAATC AAGTGGGGTG TTCAAAGGAT ATTGTCAATT GTAGCCAAAT 601 ACTTGGCTCG GAGCATGAAG AACTAGCTGA AGCTTCCTCT GATAGATCTG AAGAAGCTTG 661 CAAATCGATA ACAGATCAGC CATGTGAAAG CAGTGAAAAT AATCAAGCTG CTTGCAATAG 721 TGAACCTCCT GTGGTGAACA AGCCAGACAG CTGCTTTACC AAAGATGGTG GTCAGACAGC 781 AAACATGACC AGTTCAGATA GCTCTTCATG TCTAAGCGAG GGAGACAGAG ATAGTAGCAT 841 GAGCAGCATG ACCTCATTGA GTGCTCAGAA TCCGGAATCC TCGTCTACTT CTGATTCAGA 901 AGGATCTTCA GAAAGGAACA ATAGCAACCC AGGCAATCCA CCAACCAAGA ACGGTTCGCG 961 TTCATTACTT GAAATGTGCG CAGGAAATGG TTTCAGAGAA TACCAGCCAC AGAATATTCA 1021 CCCTTCTGAT GGCAATCAAT TTGGGTTTGG TGTGACCCCT TTCCAGGAGC AGCTGTTACA 1081 TCAGCAAAAG ATTCATGCAG CTCCATACCC GTCAACCTTG ATGGGTTTCC ATAATCATCA 1141 CATGTCAGTT CCAACAAATG GATACCTAGC ATACCCTCAA CCTGGTCATT TCTACCCAAA 1201 TGCTGTTGGA TATGGTGTGG CTGGAAACCA ATGTGTTGAC TTCCCAATGC AGTACAGTAA 1261 TGTGCATCCT TATGCAGGTC CTGAATTTGG TTATGTGCCT GCACAGCCAG TCCATAAGAC 1321 TCCGGTGAAC TTTAATGCCA TGGTGCCAAC TGCTGCGCTC TTTAGAAATG GAGCGCCAGA 1381 AGTCATAAAC CCTGTCATTG TAAAACCAGA CAGGCAGCAT CGCCATACCC TTCCTCCTGA 1441 GCCGAAGCGG GTGGATCCTG ATCCTCAGAA CGGCTGTTCA GAAGATAACA AGAAGCCGCA 1501 AGATGGCTCT GTGCCTTTCT CGTTGTTCCA TTTCAACCTT CCCATATCCT CGCCTGCCCA 1561 GGCATCATCT GAAGACGAGG TGAGTGGAGG ATGTTTGGCG TCGAGATCGC CAACTCCAAG 1621 TGCTCAAAAA GCTCAGCCTT GCTCAAGGGA GGAGACCAAC ATAAAGGAGT ACAACCTGTT 1681 CTCTGCAAGG ACTGGAGTGG AATTTCCCTT CTTCTAGACA ACAGACGCGC CTATTATTTG 1741 GCACAGAACA ATACATAGCG AGTGATTTGT ATTCTCCAAA AAAACAAAAA CAAAATAAGT 1801 TACCTCGAGG TTTTTACCGT GTTCCCTCGA ATATTTATTT ATTTCTTCTT CCATTTGTTT 1861 TGGTTGCCCT TGTGTGTAAG GAAATTGCAA AGATAGTGAG TGGTATAGTT TCTAAATTTT 1921 GAG Genomic Template: file=OSchr10, strand=-, from=387997, to=385499, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 387697 385799 (1899 n); cDNA 1 1923 (1923 n); score: 0.968 MATCH OSchr10-v3- 32982518+ 0.968 1899 0.988 C PGS_OSchr10-v3-_32982518+ (387697 385799) Alignment (genomic DNA sequence = upper lines): TTGCAGTACA ACACTGGAAT TTATTCCATC AGATTGCAAT GGTTCTTTCA TGTGTGAACA 387638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAGTACA ACACTGGAAT TTATTCCATC AGATTGCAAT GGTTCTTTCA TGTGTGAACA 60 ATCTACATCC TCAAGGAGGA AACTCAGATT TAGAAGGGAT TCCCTTCAAG AACAGACCAC 387578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTACATCC TCAAGGAGGA AACTCAGATT TAGAAGGGAT TCCCTTCAAG AACAGACCAC 120 TGGTTTTTGG TATGAAGATT GCCAAGATGA CACTGGGGGT GTTGGAAATA TTCACTGGCA 387518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTTTTGG TATGAAGATT GCCAAGATGA CACTGGGGGT GTTGGAAATA TTCACTGGCA 180 ATCTAGGGAG AGGGCAAGGA ATGCAGGTAG AGGCTGCAAC TCTTTGTTCA GTGCGAATAA 387458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTAGGGAG AGGGCAAGGA ATGCAGGTAG AGGCTGCAAC TCTTTGTTCA GTGCGAATAA 240 CCGGACAAGA GAAAGGTATG AGTACAATGC CTGCAGTTGT GGCCAGCAGG AAGATTATGG 387398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGACAAGA GAAAGGTATG AGTACAATGC CTGCAGTTGT GGCCAGCAGG AAGATTATGG 300 GTATTTTTCT CCAACAGCTA GATCAAGTAG AGAGATGAAG ATGTCCAGGA AAACAATGGT 387338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTTTCT CCAACAGCTA GATCAAGTAG AGAGATGAAG ATGTCCAGGA AAACAATGGT 360 TGAGAAGCCC TGGTTACAGT ACCGCAGGTG CTATCCATTG GATAGCTTCA TAGTGTCAAA 387278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAAGCCC TGGTTACAGT ACCGCAGGTG CTATCCATTG GATAGCTTCA TAGTGTCAAA 420 AGGAAGCCGA GTTGGTAGTA CGCCAAACAA GAATGCAGCT CCAAAACAAG TATGGGAGCC 387218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAGCCGA GTTGGTAGTA CGCCAAACAA GAATGCAGCT CCAAAACAAG TATGGGAGCC 480 AATGGATGCT AGAAAGAAAG CTAGCTTAGG GAGTTCGAAT GGTTCTTCTG AAACAGTTAG 387158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGATGCT AGAAAGAAAG CTAGCTTAGG GAGTTCGAAT GGTTCTTCTG AAACAGTTAG 540 CGGTGTTGAT CGATCCAATC AAGTGGGGTG TTCAAAGGAT ATTGTCAATT GTAGCCAAAT 387098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGTTGAT CGATCCAATC AAGTGGGGTG TTCAAAGGAT ATTGTCAATT GTAGCCAAAT 600 ACTTGGCTCG GAGCAT---G -A--A---GA A-------C- --TAG--CT- --GAAGCTTG 387062 |||||||||| |||||| | | | || | | ||| || |||||||| ACTTGGCTCG GAGCATGAAG AACTAGCTGA AGCTTCCTCT GATAGATCTG AAGAAGCTTG 660 CAAATCGATA ACAGATCAGC CATGTGAAAG CAGTGAAAAT AATCAAGCTG CTTGCAATAG 387002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATCGATA ACAGATCAGC CATGTGAAAG CAGTGAAAAT AATCAAGCTG CTTGCAATAG 720 TGAACCTCCT GTGGTGAACA AGCCAGACAG CTGCTTTACC AAAGATGGTG GTCAGACAGC 386942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACCTCCT GTGGTGAACA AGCCAGACAG CTGCTTTACC AAAGATGGTG GTCAGACAGC 780 AAACATGACC AGTTCAGATA GCTCTTCATG TCTAAGCGAG GGAGACAGAG ATAGTAGCAT 386882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACATGACC AGTTCAGATA GCTCTTCATG TCTAAGCGAG GGAGACAGAG ATAGTAGCAT 840 GAGCAGCATG ACCTCATTGA GTGCTCAGAA TCCGGAATCC TCGTCTACTT CTGATTCAGA 386822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAGCATG ACCTCATTGA GTGCTCAGAA TCCGGAATCC TCGTCTACTT CTGATTCAGA 900 AGGATCTTCA GAAAGGAACA ATAGCAACCC AGGCAATCCA CCAACCAAGA ACGGTTCGCG 386762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATCTTCA GAAAGGAACA ATAGCAACCC AGGCAATCCA CCAACCAAGA ACGGTTCGCG 960 TTCATTACTT GAAATGTGCG CAGGAAATGG TTTCAGAGAA TACCAGCCAC AGAATATTCA 386702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTACTT GAAATGTGCG CAGGAAATGG TTTCAGAGAA TACCAGCCAC AGAATATTCA 1020 CCCTTCTGAT GGCAATCAAT TTGGGTTTGG TGTGACCCCT TTCCAGGAGC AGCTGTTACA 386642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTCTGAT GGCAATCAAT TTGGGTTTGG TGTGACCCCT TTCCAGGAGC AGCTGTTACA 1080 TCAGCAAAAG ATTCATGCAG CTCCATACCC GTCAACCTTG ATGGGTTTCC ATAATCATCA 386582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCAAAAG ATTCATGCAG CTCCATACCC GTCAACCTTG ATGGGTTTCC ATAATCATCA 1140 CATGTCAGTT CCAACAAATG GATACCTAGC ATACCCTCAA CCTGGTCATT TCTACCCAAA 386522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTCAGTT CCAACAAATG GATACCTAGC ATACCCTCAA CCTGGTCATT TCTACCCAAA 1200 TGCTGTTGGA TATGGTGTGG CTGGAAACCA ATGTGTTGAC TTCCCAATGC AGTACAGTAA 386462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGTTGGA TATGGTGTGG CTGGAAACCA ATGTGTTGAC TTCCCAATGC AGTACAGTAA 1260 TGTGCATCCT TATGCAGGTC CTGAATTTGG TTATGTGCCT GCACAGCCAG TCCATAAGAC 386402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCATCCT TATGCAGGTC CTGAATTTGG TTATGTGCCT GCACAGCCAG TCCATAAGAC 1320 TCCGGTGAAC TTTAATGCCA TGGTGCCAAC TGCTGCGCTC TTTAGAAATG GAGCGCCAGA 386342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGTGAAC TTTAATGCCA TGGTGCCAAC TGCTGCGCTC TTTAGAAATG GAGCGCCAGA 1380 AGTCATAAAC CCTGTCATTG TAAAACCAGA CAGGCAGCAT CGCCATACCC TTCCTCCTGA 386282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCATAAAC CCTGTCATTG TAAAACCAGA CAGGCAGCAT CGCCATACCC TTCCTCCTGA 1440 GCCGAAGCGG GTGGATCCTG ATCCTCAGAA CGGCTGTTCA GAAGATAACA AGAAGCCGCA 386222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGAAGCGG GTGGATCCTG ATCCTCAGAA CGGCTGTTCA GAAGATAACA AGAAGCCGCA 1500 AGATGGCTCT GTGCCTTTCT CGTTGTTCCA TTTCAACCTT CCCATATCCT CGCCTGCCCA 386162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGCTCT GTGCCTTTCT CGTTGTTCCA TTTCAACCTT CCCATATCCT CGCCTGCCCA 1560 GGCATCATCT GAAGACGAGG TGAGTGGAGG ATGTTTGGCG TCGAGATCGC CAACTCCAAG 386102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATCATCT GAAGACGAGG TGAGTGGAGG ATGTTTGGCG TCGAGATCGC CAACTCCAAG 1620 TGCTCAAAAA GCTCAGCCTT GCTCAAGGGA GGAGACCAAC ATAAAGGAGT ACAACCTGTT 386042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCAAAAA GCTCAGCCTT GCTCAAGGGA GGAGACCAAC ATAAAGGAGT ACAACCTGTT 1680 CTCTGCAAGG ACTGGAGTGG AATTTCCCTT CTTCTAGACA ACAGACGCGC CTATTATTTG 385982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGCAAGG ACTGGAGTGG AATTTCCCTT CTTCTAGACA ACAGACGCGC CTATTATTTG 1740 GCACAGAACA ATACATAGCG AGTGATTTGT ATTCTCCAAA AAAACAAAAA CAAAATAAGT 385922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAGAACA ATACATAGCG AGTGATTTGT ATTCTCCAAA AAAACAAAAA CAAAATAAGT 1800 TACCTCGAGG TTTTTACCGT GTTCCCTCGA ATATTTATTT ATTTCTTCTT CCATTTGTTT 385862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCTCGAGG TTTTTACCGT GTTCCCTCGA ATATTTATTT ATTTCTTCTT CCATTTGTTT 1860 TGGTTGCCCT TGTGTGTAAG GAAATTGCAA AGATAGTGAG TGGTATAGTT TCTAAATTTT 385802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTGCCCT TGTGTGTAAG GAAATTGCAA AGATAGTGAG TGGTATAGTT TCTAAATTTT 1920 GAG 385799 ||| GAG 1923 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32974301|dbj|AK064283.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G07, full insert sequence 1 AAAAACTTGT TCATTCCTCC TCGCCTCGCC TCGCATCTCG GCTCGCCGCG CCGTCAGATC 61 CCTCGCCTCC GATGGCGCAC CGCCGCCTCT GACCAACCAC CGCCCCCACC GCCGCCCACA 121 TGCCGCCGCC CATGCTCGCG GATGCGGCGG CGGCGGCGCC CTGCTCCTCC TCATCATGCT 181 CATCCAACTC CAGCTCTTCC TCCTCCTCCT CCGCGATCTG GTCGCGCCGC CGCGACGAGA 241 TCACCTTCGA CCGCCTCGAC AAGTTCTGGA GTGCCTTGTC GCCTCAAGCA CGGCATGAGC 301 TCCTCAGGAT CGATAAGCAG ACTCTCATTG AGCATGCACG CAGGAATTTG TACTGTTCAA 361 GGTGCAATGG GCTGCTTTTA GAAAGTTTCA CACAAATGGT CATGCATGGG AAGTTACTGC 421 AACAAAAAGG TCCAGGTGTT GTACAAGATG ATTCTTGGGG AGGCCTTTCG ACAACAAAGG 481 ATGGCCTCCT GACTCTTCTT GACTGCTTCA TAAATACAAA TTCCCTTCAT GTACTCCAGA 541 ATATATTTGA CAATGCACGG GCGAGGGAGC GTGAACGGGA AATGCTTTAT CCTGATGCAT 601 GTGGTGGAGG AGAAAGAGGG TGGATTAGCC CAGTAATAGC TAATTATGGC AGGGGGCATG 661 GAACACGAGA CACATGTGCT TTGCACACTG CACGCCTTTC TTGTGATGCT CTGGTGGGTT 721 ACTGGTTTGA CCTGTGTGAA GAAACTAGAT CATCTCTTCT GCGGATGAGG GAAGAAGATT 781 TCATTGAAAG ACTTATGCAT AGGTTCGACA GCAAAAGATT TTGCAGAGAT TGCCGAAGGA 841 ATGTCATTCG TGAATTTAAG GAACTGAAAG AATTAAAGCG TCTGCGACGG GAACATCACT 901 GCACTAGCTG GTTCTGCATT ACTGATACAG CTTTCCGGTG TGAGGTGTTT GAGGATGCTG 961 TCTTAGTTGA TTGCCGCCAA TCTTTCTTGG ATCAAGATAA GTCCTATAAT CGTTTTGAGT 1021 TTGCTGTTGG AACAGAAAAA GGGAAATCTG ATATACTAGG ATTTGAAGCT GTGGGGATGA 1081 ATGGGCAAGT GCACAGGAAG GGCCTTGATC TTGACCAGTT TGAAGATTAT TTTGTTACTC 1141 TGAGAGCGCA TTATGCGGAT AACAAGAACA CAGATTTCTA TGTGAAGGCC CATGCCTTGA 1201 AGGGCCAATC ATGTGTTCAC CGCAGGCTGA TCGTGGGGGA TGGGTTTGTG ACAATTACTA 1261 AGGGAGAAAG CATTCAAAGT TTCTTTGAGC ATGCTGAAGA AGCTGAGGAA GAGGATGAAG 1321 ATGATGCTAT GGACAGGGAT GGAAATGATA CTGATGTCGA TGGTGTTCAT CCACAGAAGC 1381 ATGCTAAGAG TCCTGAACTT GCCAGAGAGT TTCTTTTGGA TGCTGCTGCA GTGATATTCA 1441 AAGAACAGGT TGAAAAATCT TTGAGGGAAG CCACGGCACA ACAAAATGCA CATAGCGTAT 1501 TTGTGTCCCT TGCATTAAAA TTGTTGGAAG AGCGGGTTCA TGTTGCCTGC AAAGAAATAA 1561 TTACATTGGA AAAACAGACC AAGCTTCTTG AGGAAGAAGA GAAAGAAAAG CGTGAAGAAG 1621 AAGAGCGCAG GGAGAGGAGG AGAACAAAGG AGAGAGAAAA GAAGCTTAGA AGAAAAGAAC 1681 GTTTG Genomic Template: file=OSchr10, strand=-, from=395355, to=387646, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 395055 394793 ( 263 n); cDNA 1 263 ( 263 n); score: 0.992 Intron 1 394792 393013 (1780 n); Pd: 0.000 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 2 393012 392734 ( 279 n); cDNA 264 542 ( 279 n); score: 1.000 Intron 2 392733 392531 ( 203 n); Pd: 0.976 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 392530 392271 ( 260 n); cDNA 543 802 ( 260 n); score: 1.000 Intron 3 392270 389892 (2379 n); Pd: 0.983 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 389891 389750 ( 142 n); cDNA 803 944 ( 142 n); score: 1.000 Intron 4 389749 389536 ( 214 n); Pd: 0.998 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 5 389535 389164 ( 372 n); cDNA 945 1316 ( 372 n); score: 1.000 Intron 5 389163 389060 ( 104 n); Pd: 0.985 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 6 389059 388928 ( 132 n); cDNA 1317 1448 ( 132 n); score: 1.000 Intron 6 388927 388292 ( 636 n); Pd: 0.990 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 7 388291 388163 ( 129 n); cDNA 1449 1577 ( 129 n); score: 1.000 Intron 7 388162 388054 ( 109 n); Pd: 0.898 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 8 388053 387946 ( 108 n); cDNA 1578 1685 ( 108 n); score: 1.000 MATCH OSchr10-v3- 32974301+ 0.999 1685 1.000 C PGS_OSchr10-v3-_32974301+ (395055 394793,393012 392734,392530 392271,389891 389750,389535 389164,389059 388928,388291 388163,388053 387946) Alignment (genomic DNA sequence = upper lines): AAACCCTTGT TCATTCCTCC TCGCCTCGCC TCGCATCTCG GCTCGCCGCG CCGTCAGATC 394996 ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACTTGT TCATTCCTCC TCGCCTCGCC TCGCATCTCG GCTCGCCGCG CCGTCAGATC 60 CCTCGCCTCC GATGGCGCAC CGCCGCCTCT GACCAACCAC CGCCCCCACC GCCGCCCACA 394936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCGCCTCC GATGGCGCAC CGCCGCCTCT GACCAACCAC CGCCCCCACC GCCGCCCACA 120 TGCCGCCGCC CATGCTCGCG GATGCGGCGG CGGCGGCGCC CTGCTCCTCC TCATCATGCT 394876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCGCCGCC CATGCTCGCG GATGCGGCGG CGGCGGCGCC CTGCTCCTCC TCATCATGCT 180 CATCCAACTC CAGCTCTTCC TCCTCCTCCT CCGCGATCTG GTCGCGCCGC CGCGACGAGA 394816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCCAACTC CAGCTCTTCC TCCTCCTCCT CCGCGATCTG GTCGCGCCGC CGCGACGAGA 240 TCACCTTCGA CCGCCTCGAC AAGGTATCTC CCCACGCCCC ACGCCCCCAA GGACTCAGCT 394756 |||||||||| |||||||||| ||| TCACCTTCGA CCGCCTCGAC AAG....... .......... .......... .......... 263 CGCCTCGATC GGATCTGGGG GCTTCGCCGT CTAGCTCACG CGGATCTGTC TGACTTTTTC 394696 .......... .......... .......... .......... .......... .......... 263 // intron part 394695 393076 (1620 n) not shown // //........ .......... .......... .......... .......... ........// AAAAATCATA TTTTACTAAC AGAACCGATC ATTTTTATTG ATGTGAGTTC CATTTTTTCC 393016 .......... .......... .......... .......... .......... .......... 263 CAGTTCTGGA GTGCCTTGTC GCCTCAAGCA CGGCATGAGC TCCTCAGGAT CGATAAGCAG 392956 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...TTCTGGA GTGCCTTGTC GCCTCAAGCA CGGCATGAGC TCCTCAGGAT CGATAAGCAG 320 ACTCTCATTG AGCATGCACG CAGGAATTTG TACTGTTCAA GGTGCAATGG GCTGCTTTTA 392896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTCATTG AGCATGCACG CAGGAATTTG TACTGTTCAA GGTGCAATGG GCTGCTTTTA 380 GAAAGTTTCA CACAAATGGT CATGCATGGG AAGTTACTGC AACAAAAAGG TCCAGGTGTT 392836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGTTTCA CACAAATGGT CATGCATGGG AAGTTACTGC AACAAAAAGG TCCAGGTGTT 440 GTACAAGATG ATTCTTGGGG AGGCCTTTCG ACAACAAAGG ATGGCCTCCT GACTCTTCTT 392776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACAAGATG ATTCTTGGGG AGGCCTTTCG ACAACAAAGG ATGGCCTCCT GACTCTTCTT 500 GACTGCTTCA TAAATACAAA TTCCCTTCAT GTACTCCAGA ATGTAAGCCT GAATAACACC 392716 |||||||||| |||||||||| |||||||||| |||||||||| || GACTGCTTCA TAAATACAAA TTCCCTTCAT GTACTCCAGA AT........ .......... 542 TTATGGTTTT ATACTTTTCT ATTTTTCTAC TTGTTCTTGT TGGGTTAGCA ATTTATTGAG 392656 .......... .......... .......... .......... .......... .......... 542 AACACTACTG AAGTTTTCTC TAGACCATGC CTGTTCATTT AAAAGAATAT TTGCATGATG 392596 .......... .......... .......... .......... .......... .......... 542 CTGGGTTAGG GTGCACTAAT TTAACCATTC TAATTTTCTC CGAATTAATT TGACTCTTTT 392536 .......... .......... .......... .......... .......... .......... 542 AATAGATATT TGACAATGCA CGGGCGAGGG AGCGTGAACG GGAAATGCTT TATCCTGATG 392476 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....ATATT TGACAATGCA CGGGCGAGGG AGCGTGAACG GGAAATGCTT TATCCTGATG 597 CATGTGGTGG AGGAGAAAGA GGGTGGATTA GCCCAGTAAT AGCTAATTAT GGCAGGGGGC 392416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTGGTGG AGGAGAAAGA GGGTGGATTA GCCCAGTAAT AGCTAATTAT GGCAGGGGGC 657 ATGGAACACG AGACACATGT GCTTTGCACA CTGCACGCCT TTCTTGTGAT GCTCTGGTGG 392356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAACACG AGACACATGT GCTTTGCACA CTGCACGCCT TTCTTGTGAT GCTCTGGTGG 717 GTTACTGGTT TGACCTGTGT GAAGAAACTA GATCATCTCT TCTGCGGATG AGGGAAGAAG 392296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTACTGGTT TGACCTGTGT GAAGAAACTA GATCATCTCT TCTGCGGATG AGGGAAGAAG 777 ATTTCATTGA AAGACTTATG CATAGGTGAG TGCAACCAAG TACAGTTTGT TTGATACAAG 392236 |||||||||| |||||||||| ||||| ATTTCATTGA AAGACTTATG CATAG..... .......... .......... .......... 802 ATTAAAGATC ATGAAATTGA TGCACAGTTA AGCATGTGAA CAAATCTATC TAGCTGGAGT 392176 .......... .......... .......... .......... .......... .......... 802 // intron part 392175 389956 (2220 n) not shown // //........ .......... .......... .......... .......... ........// TGCTCTTCAC AGGCTGGTTT GGTGTGTAAT ATTTAGCTAA TTCTGTGGAT GAATATCTGG 389896 .......... .......... .......... .......... .......... .......... 802 ACAGGTTCGA CAGCAAAAGA TTTTGCAGAG ATTGCCGAAG GAATGTCATT CGTGAATTTA 389836 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTTCGA CAGCAAAAGA TTTTGCAGAG ATTGCCGAAG GAATGTCATT CGTGAATTTA 858 AGGAACTGAA AGAATTAAAG CGTCTGCGAC GGGAACATCA CTGCACTAGC TGGTTCTGCA 389776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAACTGAA AGAATTAAAG CGTCTGCGAC GGGAACATCA CTGCACTAGC TGGTTCTGCA 918 TTACTGATAC AGCTTTCCGG TGTGAGGTAA GGATGGTGCT CCTTTCTATA TGCACTCTCA 389716 |||||||||| |||||||||| |||||| TTACTGATAC AGCTTTCCGG TGTGAG.... .......... .......... .......... 944 CAATTGTTCT TTCTTTGTTT CTGCTTTCTC TTCTTCGAAT ACACTCAGCT AGCAAAACCT 389656 .......... .......... .......... .......... .......... .......... 944 TATAAGGGTA AAACTATGGA AAATAAGACT AAAAGGAGTT GCATTCCCAT TTTTAATTGC 389596 .......... .......... .......... .......... .......... .......... 944 ACAGTAGATG ACATGGAGTT TGCCTGTAGG TGGTTAACAT CTGGCATTTT ATATTTTCAG 389536 .......... .......... .......... .......... .......... .......... 944 GTGTTTGAGG ATGCTGTCTT AGTTGATTGC CGCCAATCTT TCTTGGATCA AGATAAGTCC 389476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTGAGG ATGCTGTCTT AGTTGATTGC CGCCAATCTT TCTTGGATCA AGATAAGTCC 1004 TATAATCGTT TTGAGTTTGC TGTTGGAACA GAAAAAGGGA AATCTGATAT ACTAGGATTT 389416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAATCGTT TTGAGTTTGC TGTTGGAACA GAAAAAGGGA AATCTGATAT ACTAGGATTT 1064 GAAGCTGTGG GGATGAATGG GCAAGTGCAC AGGAAGGGCC TTGATCTTGA CCAGTTTGAA 389356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTGTGG GGATGAATGG GCAAGTGCAC AGGAAGGGCC TTGATCTTGA CCAGTTTGAA 1124 GATTATTTTG TTACTCTGAG AGCGCATTAT GCGGATAACA AGAACACAGA TTTCTATGTG 389296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTATTTTG TTACTCTGAG AGCGCATTAT GCGGATAACA AGAACACAGA TTTCTATGTG 1184 AAGGCCCATG CCTTGAAGGG CCAATCATGT GTTCACCGCA GGCTGATCGT GGGGGATGGG 389236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCCCATG CCTTGAAGGG CCAATCATGT GTTCACCGCA GGCTGATCGT GGGGGATGGG 1244 TTTGTGACAA TTACTAAGGG AGAAAGCATT CAAAGTTTCT TTGAGCATGC TGAAGAAGCT 389176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGACAA TTACTAAGGG AGAAAGCATT CAAAGTTTCT TTGAGCATGC TGAAGAAGCT 1304 GAGGAAGAGG ATGTAAGCTC ATTTCTTAAG TAATAAGATT AGGATGATCA GAACATTTGT 389116 |||||||||| || GAGGAAGAGG AT........ .......... .......... .......... .......... 1316 TAGTCCATGT TGATGGTCTG CCAATTCATA TAGTCTAATT TGTTATACAT GAGCAGGAAG 389056 |||| .......... .......... .......... .......... .......... ......GAAG 1320 ATGATGCTAT GGACAGGGAT GGAAATGATA CTGATGTCGA TGGTGTTCAT CCACAGAAGC 388996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATGCTAT GGACAGGGAT GGAAATGATA CTGATGTCGA TGGTGTTCAT CCACAGAAGC 1380 ATGCTAAGAG TCCTGAACTT GCCAGAGAGT TTCTTTTGGA TGCTGCTGCA GTGATATTCA 388936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTAAGAG TCCTGAACTT GCCAGAGAGT TTCTTTTGGA TGCTGCTGCA GTGATATTCA 1440 AAGAACAGGT AGTGTATATC ATGCAATTTC TAAGTCCTAA TCACTAAAAG ATACATGTTT 388876 |||||||| AAGAACAG.. .......... .......... .......... .......... .......... 1448 TTTTTGTGAT ATTAGCTGTA TATATAGCAA ACACTTTTCT AAATTTATGA TCTGCGTCTG 388816 .......... .......... .......... .......... .......... .......... 1448 // intron part 388815 388396 (420 n) not shown // //........ .......... .......... .......... .......... ........// CGTGTCAAGC TATTGTTGTT TCCTCTTTTC TTTTTAAGAT AGTCGTACTT AAGCCTGCAG 388336 .......... .......... .......... .......... .......... .......... 1448 CATCATCTCG TGTTGACATA GGAAACATTG TTTTTCCTGT GAAGGTTGAA AAATCTTTGA 388276 |||||| |||||||||| .......... .......... .......... .......... ....GTTGAA AAATCTTTGA 1464 GGGAAGCCAC GGCACAACAA AATGCACATA GCGTATTTGT GTCCCTTGCA TTAAAATTGT 388216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAGCCAC GGCACAACAA AATGCACATA GCGTATTTGT GTCCCTTGCA TTAAAATTGT 1524 TGGAAGAGCG GGTTCATGTT GCCTGCAAAG AAATAATTAC ATTGGAAAAA CAGGTGAGCT 388156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TGGAAGAGCG GGTTCATGTT GCCTGCAAAG AAATAATTAC ATTGGAAAAA CAG....... 1577 ACACATACTT TGTTGTGTAG AAGAAGAGAG AGGGAGCAAC TTTTGTTAGG ATTTGTTGTG 388096 .......... .......... .......... .......... .......... .......... 1577 CCTTAGTTGA CATGTAGTAA ATTCGATTAA CTTGCCTTGT AGACCAAGCT TCTTGAGGAA 388036 |||||||| |||||||||| .......... .......... .......... .......... ..ACCAAGCT TCTTGAGGAA 1595 GAAGAGAAAG AAAAGCGTGA AGAAGAAGAG CGCAGGGAGA GGAGGAGAAC AAAGGAGAGA 387976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGAAAG AAAAGCGTGA AGAAGAAGAG CGCAGGGAGA GGAGGAGAAC AAAGGAGAGA 1655 GAAAAGAAGC TTAGAAGAAA AGAACGTTTG 387946 |||||||||| |||||||||| |||||||||| GAAAAGAAGC TTAGAAGAAA AGAACGTTTG 1685 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32994438|dbj|AK109229.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F01, full insert sequence 1 ACCCTTGTTC ATTCCTCCTC GCCTCGCCTC GCATCTCGGC TCGCCGCGCC GTCAGATCCC 61 TCGCCTCCGA TGGCGCACCG CCGCCTCTGA CCAACCACCG CCCCCACCGC CGCCCACATG 121 CCGCCGCCCA TGCTCGCGGA TGCGGCGGCG GCGGCGCCCT GCTCCTCCTC ATCATGCTCA 181 TCCAACTCCA GCTCTTCCTC CTCCTCCTCC GCGATCTGGT CGCGCCGCCG CGACGAGATC 241 ACCTTCGACC GCCTCGACAA GTTCTGGAGT GCCTTGTCGC CTCAAGCACG GCATGAGCTC 301 CTCAGGATCG ATAAGCAGAC TCTCATTGAG CATGCACGCA GGAATTTGTA CTGTTCAAGG 361 TGCAATGGGC TGCTTTTAGA AAGTTTCACA CAAATGGTCA TGCATGGGAA GTTACTGCAA 421 CAAAAAGGTC CAGGTGTTGT ACAAGATGAT TCTTGGGGAG GCCTTTCGAC AACAAAGGAT 481 GGCCTCCTGA CTCTTCTTGA CTGCTTCATA AATACAAATT CCCTTCATGT Genomic Template: file=OSchr10, strand=-, from=395353, to=392444, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 395053 394793 ( 261 n); cDNA 1 261 ( 261 n); score: 1.000 Intron 1 394792 393013 (1780 n); Pd: 0.000 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 2 393012 392744 ( 269 n); cDNA 262 530 ( 269 n); score: 1.000 MATCH OSchr10-v3- 32994438+ 1.000 530 1.000 C PGS_OSchr10-v3-_32994438+ (395053 394793,393012 392744) Alignment (genomic DNA sequence = upper lines): ACCCTTGTTC ATTCCTCCTC GCCTCGCCTC GCATCTCGGC TCGCCGCGCC GTCAGATCCC 394994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCTTGTTC ATTCCTCCTC GCCTCGCCTC GCATCTCGGC TCGCCGCGCC GTCAGATCCC 60 TCGCCTCCGA TGGCGCACCG CCGCCTCTGA CCAACCACCG CCCCCACCGC CGCCCACATG 394934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCTCCGA TGGCGCACCG CCGCCTCTGA CCAACCACCG CCCCCACCGC CGCCCACATG 120 CCGCCGCCCA TGCTCGCGGA TGCGGCGGCG GCGGCGCCCT GCTCCTCCTC ATCATGCTCA 394874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGCCCA TGCTCGCGGA TGCGGCGGCG GCGGCGCCCT GCTCCTCCTC ATCATGCTCA 180 TCCAACTCCA GCTCTTCCTC CTCCTCCTCC GCGATCTGGT CGCGCCGCCG CGACGAGATC 394814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAACTCCA GCTCTTCCTC CTCCTCCTCC GCGATCTGGT CGCGCCGCCG CGACGAGATC 240 ACCTTCGACC GCCTCGACAA GGTATCTCCC CACGCCCCAC GCCCCCAAGG ACTCAGCTCG 394754 |||||||||| |||||||||| | ACCTTCGACC GCCTCGACAA G......... .......... .......... .......... 261 CCTCGATCGG ATCTGGGGGC TTCGCCGTCT AGCTCACGCG GATCTGTCTG ACTTTTTCAC 394694 .......... .......... .......... .......... .......... .......... 261 // intron part 394693 393074 (1620 n) not shown // //........ .......... .......... .......... .......... ........// AAATCATATT TTACTAACAG AACCGATCAT TTTTATTGAT GTGAGTTCCA TTTTTTCCCA 393014 .......... .......... .......... .......... .......... .......... 261 GTTCTGGAGT GCCTTGTCGC CTCAAGCACG GCATGAGCTC CTCAGGATCG ATAAGCAGAC 392954 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TTCTGGAGT GCCTTGTCGC CTCAAGCACG GCATGAGCTC CTCAGGATCG ATAAGCAGAC 320 TCTCATTGAG CATGCACGCA GGAATTTGTA CTGTTCAAGG TGCAATGGGC TGCTTTTAGA 392894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCATTGAG CATGCACGCA GGAATTTGTA CTGTTCAAGG TGCAATGGGC TGCTTTTAGA 380 AAGTTTCACA CAAATGGTCA TGCATGGGAA GTTACTGCAA CAAAAAGGTC CAGGTGTTGT 392834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTTCACA CAAATGGTCA TGCATGGGAA GTTACTGCAA CAAAAAGGTC CAGGTGTTGT 440 ACAAGATGAT TCTTGGGGAG GCCTTTCGAC AACAAAGGAT GGCCTCCTGA CTCTTCTTGA 392774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGATGAT TCTTGGGGAG GCCTTTCGAC AACAAAGGAT GGCCTCCTGA CTCTTCTTGA 500 CTGCTTCATA AATACAAATT CCCTTCATGT 392744 |||||||||| |||||||||| |||||||||| CTGCTTCATA AATACAAATT CCCTTCATGT 530 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32990588|dbj|AK105379.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G05, full insert sequence 1 CTCCTCACTT ACCAAAGGCG GCTGCTGCTT CGCTATCCTC CTGCAGCTCG CCCAGCAGGC 61 AGCAGGTCGC CGTCCTCCCA AGCTAGCGAA CAGCGGCGGC GGCGGTGACC GGAACCGAAG 121 GCGGCGGGTT GGTTGGAGTG GCCAGCGGCG GCGCTCCACG GCGCGACGAC GACACAAGCC 181 GCGTGGGCCT CGCGAGGCTG GACTTCTGGA GTGGCCGGCG GCGTCTCTGC GGCTCTTCAG 241 CACCACGACG ACGACACAAG CCGCGGGCCT CGCATCCTCC GTTTGGCTGG AGTTGCCGCC 301 GGCGGCTCCA TCGCTCTTCG GCAGCACGAC GACGACCGGA CGATGACACA AGCCGCACTA 361 GCCTTGCATC CTTGCGTGTT TCATTCTCTT GTTCCTCTGC TTTGGATTTA ATAGACTCGA 421 TGCTTATCTA T Genomic Template: file=OSchr10, strand=+, from=441664, to=442686, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 441964 442386 ( 423 n); cDNA 1 431 ( 431 n); score: 0.929 MATCH OSchr10-v3+ 32990588+ 0.929 423 0.981 C PGS_OSchr10-v3+_32990588+ (441964 442386) Alignment (genomic DNA sequence = upper lines): CTCCTCACTT ACCAAAGGCG GCTGCTGCTT CGCTATCCTC CTGCGGCTCG CCCAGCAGGC 442023 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| CTCCTCACTT ACCAAAGGCG GCTGCTGCTT CGCTATCCTC CTGCAGCTCG CCCAGCAGGC 60 AGCAGGTCGC CGTCCTCCCA TGCTAGCGAA CAGCGGCGGC GGCGGTGGCC GGAACCGGAG 442083 |||||||||| |||||||||| ||||||||| |||||||||| ||||||| || ||||||| || AGCAGGTCGC CGTCCTCCCA AGCTAGCGAA CAGCGGCGGC GGCGGTGACC GGAACCGAAG 120 GCGGCAGGTT GGTTGGAGTG GCCGGCGGCG GCGCTCCACG GCGCGACGAC GACACAAGCC 442143 ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GCGGCGGGTT GGTTGGAGTG GCCAGCGGCG GCGCTCCACG GCGCGACGAC GACACAAGCC 180 GCGTGGGCCT CGCGA----G G----CTGGA GTGGCCGGCG GCGTCTCTGC GGCTCTTCGG 442195 |||||||||| ||||| | | ||||| |||||||||| |||||||||| |||||||| | GCGTGGGCCT CGCGAGGCTG GACTTCTGGA GTGGCCGGCG GCGTCTCTGC GGCTCTTCAG 240 CACCACGACG ACGACACAAG CCGCGGGCCT CGCATCCTCC GTTTGGCTGG AGTTGCCGCC 442255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCACGACG ACGACACAAG CCGCGGGCCT CGCATCCTCC GTTTGGCTGG AGTTGCCGCC 300 GGCGGCTCCA TCGTTCTTCG GCAGCACGAC GACGACCGGA CGACGACACA AGCCGCACTA 442315 |||||||||| ||| |||||| |||||||||| |||||||||| ||| |||||| |||||||||| GGCGGCTCCA TCGCTCTTCG GCAGCACGAC GACGACCGGA CGATGACACA AGCCGCACTA 360 GCCTTGCATC CTTGCGTGTT TCATTCTCCT GTTCCTCTGC TTTGGATTTA ATAGACTCGA 442375 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| GCCTTGCATC CTTGCGTGTT TCATTCTCTT GTTCCTCTGC TTTGGATTTA ATAGACTCGA 420 TGCTTATCTA T 442386 |||||||||| | TGCTTATCTA T 431 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|37989741|dbj|AK120118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025N10, full insert sequence 1 TGTTTGCCCC ATCTCCCGAG CTCTCTCGTC GCCCGTAGAG CCGCCGCCGC TAGCATCGTC 61 GCCGCTGCCG TCCGTCGCCG CCGTCGGGTG CGCACGGAGG AGAGGAACCC CGTCCGCCCC 121 TTCGCAGCCG CCGAAGACCA CCGGAGCACC ATCGCCGCCG TCAAGCCGAA CCGTGCCGCC 181 ATTGAACCTC GTCGCCGGCC GTCGTTCGTC GTTGTCCGTC GTTGTTCTTT GCACCGGTGA 241 GTTCGCGTCG TCGTCCTCTA CGCGTAGGTG TCCTCGGATA GCCCAACCGA GCCCTCTTTT 301 GCCGGTGGTC GTGTCAACTG TGCCATGGCC GGCGATGATG ACGTCAGCGA TGACGTCATA 361 AATCCCTTTT TCTAGGTTTT CTTTATTAGA TGAAAATCGA TTAAACTTCA TAAATTCATA 421 ACTAAATCAT CGTAACTCGG ATTTGAGTGG TTCAAGTTGC TAATTCATCT AAAATCGAGA 481 TCTTCAGTTA AAAATATCCA CATGTACTAT TTATGCTTGT TTTTGTACTG TTTTGTTGAT 541 TTTGTTCTTT TGCTTTAGTT TCCGACATTT CGGAGGAGAG CGTTTTCGTT GAGGAAGGTT 601 CGGAAGCGTT TGGGGAAGCT CAAGGCAAGT CACACAGATC CTAAACACAA TCCTTTGAGC 661 ATGTTGATCC TATATTTAAA TTCTCTATTT ATTTCAACTG TTTATTAATT TTCGAATGTC 721 ACCGGGTGGT GTGAACCTAT TCCTTTGTTA TGGCCAATTT GCATTGAATG CCCTATTCCT 781 TGATACCTTG GGTAATAAAT TGACTAGCTT GAACCTTGAA CCTTATGTAT TGGTTTGGTT 841 CAGCTAAGTG TTATATATAT AATTGCTTAG CCATGCTTAG AAACATTAGC TCACTAATGG 901 GATGAATCAT ATATACTACA TTATTATTTA TGGTTATATT TAATGATAGC TCACGATGGT 961 TAATCGTGTT ATGATAATTA ATTAGTAATT AAAATATGAT TAATGGTGGG TTGTGAGCAC 1021 ATGGTTTTGA AGGTCGTGCT CATGACAATT AAAGACCGGT TCGCGAGCTA CTGTTGTGAA 1081 ACATTAACCG TACCAACCAC AAGCCAACGT GGGCAACGGC TTTACCTTTT GTATAGCATT 1141 GTTCATTACG GGGTGCCAGA CGGAGAAGCG GTGAGAAGTC CGTGGGGATC GCTGGGGAGT 1201 CCATGCCTCT GGTTATATTT ATAGAGAGGG TGATTATGAT CCAGGAATGG TGCACTGTGG 1261 TGAGTTGTGT TGTGCAGGGG GTATTGTCAC AGCCTCTATT CGGGTACTTT CTAGTATCGC 1321 AACGCATGGT AGACATGATG TTGAGGCTGT GTCTTGTGGG TACAGTGGTA CACCTCTGGC 1381 CAGAGTAAAA CTATTCGAAT AGCCGTGCCA GCGGTTATGA GCGAGTTGAG CAATGTTTTT 1441 CGTGATTAGT CTCACACCTC TCACAAATAA TTATTGATGC AATAACTGGT AATAATTTGT 1501 TTAGCTCCTG GTTTGGAGTT AGATCTGTAC AGCCGGGTAT GGTTGTTCGG GATGGTTGGG 1561 CCTGAGCAGC ATGGGTGTGC TGTTCAGTGT TGATTAAAAT TTCTGATTAA TTACTCTACT 1621 GTTTTACTTT TAAATCTTTG TAAATGCTGC TTTTGCAAAT GAGCCTATAT TATGCCATCC 1681 TTTGGTATCC TTGTGCACTT GCATATTTGC TGTGTGGCTT ATTGAGTATG TCATATGCTC 1741 ACCTTGCAAT AATCAATCAA CCTCAGTTGA AGAGAAAGGA TCCAGGAGTA GACGTTTGGC 1801 TTATACCCCA GTTGAGCTGC CTGTGGGAGT GGAGCTGAAG CCATCGCTAG ACCGTTAATT 1861 CCGCTGCTGT TTTTCTTTTC TTTTGTAAGT ATGTAACGTT ATTATTATGG TGGATTTGTA 1921 TATTAAATTG TCAGTTTGTG TACCTCGGCT GATTCCTGGA CGAGGATTTT ATGTATAAAT 1981 TAGTTTGGAA ATTACTAGTA AATTTCCGGG CGTGACAACG CCGGTGC Genomic Template: file=OSchr10, strand=+, from=492041, to=494456, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 492774 494155 (1382 n); cDNA 625 2016 (1392 n); score: 0.885 MATCH OSchr10-v3+ 37989741+ 0.885 1382 0.682 C PGS_OSchr10-v3+_37989741+ (492774 494155) Alignment (genomic DNA sequence = upper lines): GCAAGTCACA AAGATCCTAA ACACAATCCT TTGAGCATGT TGATCCTATA TTTAAATTCT 492833 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGTCACA CAGATCCTAA ACACAATCCT TTGAGCATGT TGATCCTATA TTTAAATTCT 684 CTATTTATTT CAACTGTGTA TTTATTTTCG AATGTCACCG GATGGTGTGA ACCTATTCCT 492893 |||||||||| ||||||| || || ||||||| |||||||||| | |||||||| |||||||||| CTATTTATTT CAACTGTTTA TTAATTTTCG AATGTCACCG GGTGGTGTGA ACCTATTCCT 744 TTGTTATGGC CAATTTGCAT TGAATGCCCT ATTCCTTGAT ACCTTGGGTA ATAAATTG-- 492951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTGTTATGGC CAATTTGCAT TGAATGCCCT ATTCCTTGAT ACCTTGGGTA ATAAATTGAC 804 -A--TT--AG CTTGAACCTT ATGTATTGGT TTGGTTCAGC TAAATGTTAT ATATATAATT 493006 | || | |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TAGCTTGAAC CTTGAACCTT ATGTATTGGT TTGGTTCAGC TAAGTGTTAT ATATATAATT 864 ACTTAGCCAT GCTTAGAAAC ATTAGCTCAC TAATGGGATG AATCATATAT ACTACATTAT 493066 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTAGCCAT GCTTAGAAAC ATTAGCTCAC TAATGGGATG AATCATATAT ACTACATTAT 924 TATTTATGGT TATATTTAAT G-TAGCTCAC GATGGTTAAT CGTGTTATGA TAATTAACTG 493125 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ||||||| | TATTTATGGT TATATTTAAT GATAGCTCAC GATGGTTAAT CGTGTTATGA TAATTAATTA 984 ATAATTAAAA CTTG-TCAAT GGTGGGTTGT GAGCACATGG TTGTGAAGGT CGTGCTCATG 493184 ||||||||| || | ||| |||||||||| |||||||||| || ||||||| |||||||||| GTAATTAAAA TATGATTAAT GGTGGGTTGT GAGCACATGG TTTTGAAGGT CGTGCTCATG 1044 GCAATTAAGG ACCGGTTCGC GAGCTACTAT TGTGAAACAT TAACCGTACC AACCAAAAGC 493244 ||||||| | |||||||||| |||||||| | |||||||||| |||||||||| ||||| |||| ACAATTAAAG ACCGGTTCGC GAGCTACTGT TGTGAAACAT TAACCGTACC AACCACAAGC 1104 CAGCGTGGGC AACGGCCTTA TCTTTTATAT AGCATGATTC ATTACGGGGT GCTAGACTGA 493304 || ||||||| |||||| ||| ||||| ||| ||||| ||| |||||||||| || |||| || CAACGTGGGC AACGGCTTTA CCTTTTGTAT AGCATTGTTC ATTACGGGGT GCCAGACGGA 1164 GAAGCGGCGA GAAGTTCGTG GGGGTCGCTG GGGAGTCCAT TGCCTCTGG- ----TTT-T- 493357 ||||||| || ||||| |||| ||| |||||| ||||||||| ||||||||| ||| | GAAGCGGTGA GAAGTCCGTG GGGATCGCTG GGGAGTCCA- TGCCTCTGGT TATATTTATA 1223 GAGGGGGAGA TTATGATCCA GGAATGGTGC ACTGTGGTGA GTTGTGTTGT GCGAAGGGTA 493417 ||| ||| || |||||||||| |||||||||| |||||||||| |||||||||| || ||||| GAGAGGGTGA TTATGATCCA GGAATGGTGC ACTGTGGTGA GTTGTGTTGT GCAGGGGGTA 1283 TTGTCACGAT TTCCCCCTTT GAAGTGCCGT GGTGGTACTT CGGGGCATGG CA-ACATG-T 493475 ||||||| | || | || || | | | ||| | |||||| | ||||| | TTGTCAC-A- -GCCTCTATT CGGGT-ACTT TCTAGTATCG CAACGCATGG TAGACATGAT 1339 GTGGAATC-G TGCCTTGTGG GTACAGTGGT ACACCTCTAG CCAGAGTAAA ACTATTCGAA 493534 || || | | || ||||||| |||||||||| |||||||| | |||||||||| |||||||||| GTTGAGGCTG TGTCTTGTGG GTACAGTGGT ACACCTCTGG CCAGAGTAAA ACTATTCGAA 1399 TAGCCGTGCC CGCGGTTATG GGCGGGTTGA GCAATGTTTT TCGTGATTAG TCTCACACCT 493594 |||||||||| ||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| TAGCCGTGCC AGCGGTTATG AGCGAGTTGA GCAATGTTTT TCGTGATTAG TCTCACACCT 1459 CT--CAAATA ATTATTGATG CAATAACTGG TAATAATTTG TTTAGCTCCT AGTTTGGAGT 493652 || |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTCACAAATA ATTATTGATG CAATAACTGG TAATAATTTG TTTAGCTCCT GGTTTGGAGT 1519 TAGATCTGTA CAGCCGGGTA TGGTTGTTCA GGATGGTTGG GCCTGTGCAG CATTGGGGTG 493712 |||||||||| |||||||||| ||||||||| |||||||||| ||||| |||| ||| || ||| TAGATCTGTA CAGCCGGGTA TGGTTGTTCG GGATGGTTGG GCCTGAGCAG CATGGGTGTG 1579 CTGTTCAGTG TTGATTAAAA TTGATGATTA ATTACTCTAC TATTTTACTT CTCTTAAATG 493772 |||||||||| |||||||||| || |||||| |||||||||| | |||||| | | |||||| CTGTTCAGTG TTGATTAAAA TTTCTGATTA ATTACTCTAC TGTTTTAC-T -T-TTAAATC 1636 TTTGCTAAAT GCTGCTTTTG CAAATGAGCC TATATTATGC CATCCTTTGG TATCCTTGTG 493832 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTG-TAAAT GCTGCTTTTG CAAATGAGCC TATATTATGC CATCCTTTGG TATCCTTGTG 1695 CACTTGCATA TTTGCTGTGT GGCTTGTTGA GTATGTCATA TGCTCATTCT TGCAATAATC 493892 |||||||||| |||||||||| ||||| |||| |||||||||| |||||| || |||||||||| CACTTGCATA TTTGCTGTGT GGCTTATTGA GTATGTCATA TGCTCA-CCT TGCAATAATC 1754 AATCAACCTC AGTTGAAGAA AAAGGATCCA GAAGGAGAAG ACGTTTGGCT TATACCCCAG 493952 |||||||||| ||||||||| ||||||||| ||||| || |||||||||| |||||||||| AATCAACCTC AGTTGAAGAG AAAGGATCC- --AGGAGTAG ACGTTTGGCT TATACCCCAG 1811 TTGAGCTGCC TGTGGGAGTG GAGCTGAAGC CATCGCTAGA CCGTT-ATTC CGCTGCTG-T 494010 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||| | TTGAGCTGCC TGTGGGAGTG GAGCTGAAGC CATCGCTAGA CCGTTAATTC CGCTGCTGTT 1871 TTTCTTTTCT TTTGTAAGTA TGTAACGTTA TTATTATGAT GGATTTGTAT ATTGAATTGT 494070 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ||| |||||| TTTCTTTTCT TTTGTAAGTA TGTAACGTTA TTATTATGGT GGATTTGTAT ATTAAATTGT 1931 CAGTTTGTGT ACTTCGGCTA ATTCCTGGAT GAGAGTTTTA TGCACAAATA AGTTCGAAAA 494130 |||||||||| || |||||| ||||||||| ||| ||||| || | |||| |||| | ||| CAGTTTGTGT ACCTCGGCTG ATTCCTGGAC GAGGATTTTA TGTATAAATT AGTTTGGAAA 1991 TTACTAGTGA ATTTTCGGGC GTGAC 494155 |||||||| | |||| ||||| ||||| TTACTAGTAA ATTTCCGGGC GTGAC 2016 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32988265|dbj|AK103056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117K01, full insert sequence 1 GAGCCGCCGT TGCCGCCCGG ACGGGGTCAG CAGGCCGCCG CCACCACCCT GTGTAGGCTC 61 GAGCACGACC ATGACGAAGA CAACCGCGGC TCGGCGACGA TGGTTGTCTG GTCATTCGTG 121 CTTTCCTTTT TCCTTTGTCT CACGTTTTCC CCTCCCAGAA ATCCTCCGCC GTCTGCTCAT 181 GGTCTCATGG AGCCTATGGC CAGCCGCCGC CTTCCCCTCG AGCTCGCGAA GCCGGAGCCG 241 CTGCCTTCCT CTCAAGCTCG CTGAGCCAGC CGTTGCTGCC GCGGTGCGGA GCCAGTGGTT 301 ACTGTCGTCG TCTTCCCAGC GAGCTAGCGG CGGCTGCTGC CCCCTTCTTG CGAGTTCGAT 361 GTCCACTGTC GCCGCCATTT CGTCTCTTTC TCCATCCCAC GAGAACTTGG TTCTGCAAGA 421 TCTGTTCCGC ATCGAGCGCC TACAAGCACG CGGCAACCAA CAGGCTTATA TGACTGGTGG 481 AAATCTCTAC TTGATTTTTC TGTGGTGCAT GGTCAATCAA GTCTGAAGAT ATGAGGCCTG 541 CATCTATTTT TGGAACCACA GATTTCGCTG TTAGAAGGCC ATATTCCGTT GATTCAAAAC 601 TTTTTTTTTA TGTGCAGCCT GCATTTATTT TTGGAAGCAT AAACGAAAGG ATCACATATG 661 TATGTCTGTT TGCTAATTAA TACCTTTTCC TGCAAATACA CATACACCAC TTGGATGTAG 721 ATACCCATTC TGCCTTGCTT TACATGTTAA TTAACTTGAT TGGGTAAATG TTTACTGCAT 781 TGATCGACCG GTATCTCAAA GTACAATCAG TAAGTGACTG AAGCTAATTC ATTAGCCTTT 841 TATGTCTATA TATGATCATA AAAATATCTG TAGAGTGCAT CAGACAAGCA AAAAGTATAT 901 GGCAAGTGAT AGCACATTTC TTAGGGAAGG GATTTATGAG TTCAATGTTA AAATCCTCTC 961 TATCAGTCGC CTCGCATTTT TAACTTATCT AGGTTGCTTC CCTATTTTTT GCTACATAAG 1021 AACTAGATGT ATGTCACCAT ATCAGAGTTA TTTATATTCA CATGTTATAT TCTAAATCCA 1081 TATGTTGTTG AGATGTGTTC TTTAATTGAT CTCTTCATCT CTATGCAGAG TATCCTATCA 1141 TAACATTAAC AATGTTAGAT CATACTTTTA GTGGGAGTTG CATGGAGTTA TTATTATCAA 1201 AGCTGTTATT ATTATCAAAG CTATTGAAGG TATTGTACAT TGTTACATCT CCTTCACCCT 1261 TTATAGGTTT CTATATTACA GATGCTCCTG CTATTGTTTT AATTCTTTTT CGACCAGTAC 1321 AACCTGATTA GCTATTCTTA CTAATTCTTT TTATACAAAA AAATATTTAG ACATGGATAT 1381 TTACACCATC AAGTGTAAAA TGTTACTTAC ACTGCTTGCA TATGTAAGGG AAAAATACTG 1441 CCAGCTCCGT TCAAGTTCCC CAGAGCCATA TAGACTATAT TGCTATTTTG CTTGATCTTT 1501 AATCTTATGA TAATGATTCT ATGATTAAGG TTAATTATGT ATATCGTCGT CATGTATCTT 1561 GCATTTCATT TGCTGAATAA TACACAAATT GTTGTATAAC AACATAACTA CATAATTGAG 1621 CTTAATTTTT GTAAAGACCA TCCAGTACAA CTTCTGAGTT ACATTGGTAA CATAACAACC 1681 GGCGTTATTA TACTGCTCTC ATATGCTCTG ATGAAATTTC TTCCATATAT ACATTGTACT 1741 TTGATAGCCT TTGTGTCTCT ACTATTTGAT CTCACCAATT CGTTTTTAAA GCTTTCTCCT 1801 GCTTGCATGA AGAGATTTTT TCTGTTGGTG TTGCTGAGTA CGAAGAATTT GTTCATCCAT 1861 GTGTTGCCAG TGCCTCTTCC AGTGTGATAT GATGTGAATT GAGTATTCAT GCTCTGTTAG 1921 CCTCTTTTAA GTAGCTAATG GAGGAAATGA TTCTCACCAT TTCAGTAGCT CCATTATGTC 1981 ATTGATGATT GAGTTACACC CATTTAAAAT ATTTAGTTTC TACTTTAGTT ACCTCATCAA 2041 GGTATATTGT TTCCACTGAG ATTCACTTGA GATGGAATTT TAAACTAGCA TTGATGTGTA 2101 TCTTTCATGC CATCTCTACA AAACATGAAG GGCGCCAAAA GAATGTTATC AGTTGATTAT 2161 GACTATATAC ACTGTTAGGA TATGTCTTCA ATCATTTTCT TTAAAAGAAG GATGGCTCCA 2221 TTTTTGAGTC ATGAAAACAT TAGCAGTCTC GAGAATGACC TTCATTTATT CATGCTTCAT 2281 CACATATCTC TATATTCTTT TTTTATTAGG TCGAAAAAGA CATGGATGGA TTGGATCCAT 2341 CACGGAAAGC TGATTTCCTG TTCATATCTG AGACGAACGT AAATTTCTTT TGAAGGTACA 2401 TTTCAATTTA GTTTGTGCAT CAACTGTTCA ATCGGAATGC TTTGCTAGAC ATATCCTAAC 2461 CGTTACGATG CAAAGGTAAA GCAATATCAT AGTCCATTTT TTTTTATATT TTGTCTTTCA 2521 GTTGGTTTGC TTTTACATGT CTGTGCTCAG ATAGATTATT TCACTGTTTA GTTCACCAGT 2581 CTATTTTACA CATGTTTTTT TCATTATTTG TGAAAGCACA CTTTTAAATC CTAAAAGTTG 2641 TGCAGTCGAT CTGTTTCGTC AAACTGTAGT GTAGCCTGCT GCCACTGTGC TTTTACAAGC 2701 TCTTTGTTTC CGCGTTGTAT ATTTTGCCGG CTACTTAAAA GGAACAGGGA AGAAAAAAAT 2761 GGAACCTAAC CTGAAGAAGT ATATATGCAT TGTAGAACTA TAAGGCTTAT GTTATTGCAT 2821 CCATACTTTG GTTAAGTGAT TATGCATGCT TTCGCTCATA AACTTTGCCA CGTGGCCACA 2881 TGGTAGCAGC ACTTTGTACT ACTCCACTCC AAAAAAGATA GAACTTTTGG TAGAAAAATT 2941 GGTTGCATGT GTTTAGAATT GTGATGCCAA GCGAAAATAT TATCTCTCTA TATAAGTGGT 3001 TGATACTATA CTGTTTTAGC TGTGCTAACA TTACTATTAA AACTTTCTAC TACCTTTGTC 3061 CCAAAATATA AAAACTTCTG GCCCTATATC TTGAAAGGTA TGTTTAGGTA CACAGCTCAA 3121 AATTGCGATA TATTTTGGGA CGGAGGTAGT ATACTTTTTT TTAGGTGTAC CGATGTCACT 3181 AACCGCACAT AACGGAGGAT TGTTGTTGAC TAGGGCACTT GCATGTTGCA CTTAAAAAAC 3241 ATCATTTTCT ATCTGTTCAT TTTAGCTTTG CATATGTTTA ATATGGACCA ACAGTAGGCA 3301 TTTAGGTCTT CTGTTTTTAG CATCCAATAG TCCAATGTGA TTCTAGCGTA TAGAGAGAAA 3361 AGGGGTAGCA TTGAAACCTA TGTAAACTCA TTGTAATTGA CATGTAATTT GCCCCTTTTT 3421 TTCTATTTAT TCAAACTTCC AATACCTTTT GGTTTTCTCC TTTAGCCTAT ACACTATATT 3481 TTTGTATGTG CAATTTTTTT ATAAGGGTAG TTTATGGGAT ATAGACGAAA AATAAACCAA 3541 TGCTATGGGT GAATAGTATA TGCATATTAT TCCTCGAACA TATTGGACTT CAATTGATTC 3601 AGGCGATTGA TTCAGGCGGC GCAGCGTAGT GTGCTTCTAT TGCTAGTGAG TTTTATCTTT 3661 AACCAAGAGG AAGACCCTAG AACTGTCCCC TCTATGTGTA ACGGCTGCTA ATTTTAAGCT 3721 GTTATAGATG AGTTTTATCC TTAAGGGTCT CCGGCCGTTA CAGATGATTG GACACATGTG 3781 TAACCAATTG TTTGTAATGC CTGCTGAGCC GTTACAGATA GATAGGTCTG TGCTATATGT 3841 TTCTTAATTT TTGGATGTTG AAAAATAATT TTAAATGTCT TGACCGTCAA GTGCACATAT 3901 TCTACATTTT GTAATATATA AGCCACATTT GTACAAACTA CGGTTAATTG GATCATGCTA 3961 TTACAACTTC TTCG Genomic Template: file=OSchr10, strand=+, from=508133, to=512907, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 508433 508895 ( 463 n); cDNA 1 463 ( 463 n); score: 1.000 Intron 1 508896 509007 ( 112 n); Pd: 0.000 (s: 1.00), Pa: 0.678 (s: 1.00) Exon 2 509008 509079 ( 72 n); cDNA 464 535 ( 72 n); score: 1.000 Intron 2 509080 509168 ( 89 n); Pd: 0.023 (s: 1.00), Pa: 0.946 (s: 1.00) Exon 3 509169 512607 (3439 n); cDNA 536 3974 (3439 n); score: 0.999 MATCH OSchr10-v3+ 32988265+ 0.999 3974 1.000 C PGS_OSchr10-v3+_32988265+ (508433 508895,509008 509079,509169 512607) Alignment (genomic DNA sequence = upper lines): GAGCCGCCGT TGCCGCCCGG ACGGGGTCAG CAGGCCGCCG CCACCACCCT GTGTAGGCTC 508492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCCGCCGT TGCCGCCCGG ACGGGGTCAG CAGGCCGCCG CCACCACCCT GTGTAGGCTC 60 GAGCACGACC ATGACGAAGA CAACCGCGGC TCGGCGACGA TGGTTGTCTG GTCATTCGTG 508552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCACGACC ATGACGAAGA CAACCGCGGC TCGGCGACGA TGGTTGTCTG GTCATTCGTG 120 CTTTCCTTTT TCCTTTGTCT CACGTTTTCC CCTCCCAGAA ATCCTCCGCC GTCTGCTCAT 508612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCCTTTT TCCTTTGTCT CACGTTTTCC CCTCCCAGAA ATCCTCCGCC GTCTGCTCAT 180 GGTCTCATGG AGCCTATGGC CAGCCGCCGC CTTCCCCTCG AGCTCGCGAA GCCGGAGCCG 508672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCTCATGG AGCCTATGGC CAGCCGCCGC CTTCCCCTCG AGCTCGCGAA GCCGGAGCCG 240 CTGCCTTCCT CTCAAGCTCG CTGAGCCAGC CGTTGCTGCC GCGGTGCGGA GCCAGTGGTT 508732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCCTTCCT CTCAAGCTCG CTGAGCCAGC CGTTGCTGCC GCGGTGCGGA GCCAGTGGTT 300 ACTGTCGTCG TCTTCCCAGC GAGCTAGCGG CGGCTGCTGC CCCCTTCTTG CGAGTTCGAT 508792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTCGTCG TCTTCCCAGC GAGCTAGCGG CGGCTGCTGC CCCCTTCTTG CGAGTTCGAT 360 GTCCACTGTC GCCGCCATTT CGTCTCTTTC TCCATCCCAC GAGAACTTGG TTCTGCAAGA 508852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCACTGTC GCCGCCATTT CGTCTCTTTC TCCATCCCAC GAGAACTTGG TTCTGCAAGA 420 TCTGTTCCGC ATCGAGCGCC TACAAGCACG CGGCAACCAA CAGGTGAAAC TCGACATGGG 508912 |||||||||| |||||||||| |||||||||| |||||||||| ||| TCTGTTCCGC ATCGAGCGCC TACAAGCACG CGGCAACCAA CAG....... .......... 463 TGGCAGCAGC CAAATCTCCT CCTGCTGATA CTACTCCTCA AATTGATTTC TCAGTTCTCT 508972 .......... .......... .......... .......... .......... .......... 463 TTACAGTCCT GCATCTCATG CTTTCTTCAT ATCAGGCTTA TATGACTGGT GGAAATCTCT 509032 ||||| |||||||||| |||||||||| .......... .......... .......... .....GCTTA TATGACTGGT GGAAATCTCT 488 ACTTGATTTT TCTGTGGTGC ATGGTCAATC AAGTCTGAAG ATATGAGGTT ACAAATGCTT 509092 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACTTGATTTT TCTGTGGTGC ATGGTCAATC AAGTCTGAAG ATATGAG... .......... 535 TACCTGCATT ATGCTTCTCA AATTTCACTG TTAGAAGGCC ATATTTCGTT GATTCAAAAC 509152 .......... .......... .......... .......... .......... .......... 535 TCATTTTTAT GTGCAGGCCT GCATCTATTT TTGGAACCAC AGATTTCGCT GTTAGAAGGC 509212 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCCT GCATCTATTT TTGGAACCAC AGATTTCGCT GTTAGAAGGC 579 CATATTCCGT TGATTCAAAA CTTTTTTTTT TATGTGCAGC CTGCATTTAT TTTTGGAAGC 509272 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CATATTCCGT TGATTCAAAA C-TTTTTTTT TATGTGCAGC CTGCATTTAT TTTTGGAAGC 638 ATAAACGAAA GGATCACATA TGTATGTCTG TTTGCTAATT AATACCTTTT CCTGCAAATA 509332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAACGAAA GGATCACATA TGTATGTCTG TTTGCTAATT AATACCTTTT CCTGCAAATA 698 CACATACACC ACTTGGATGT AGATACCCAT TCTGCCTTGC TTTACATGTT AATTAACTTG 509392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACATACACC ACTTGGATGT AGATACCCAT TCTGCCTTGC TTTACATGTT AATTAACTTG 758 ATTGGGTAAA TGTTTACTGC ATTGATCGAC CGGTATCTCA AAGTACAATC AGTAAGTGAC 509452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGGTAAA TGTTTACTGC ATTGATCGAC CGGTATCTCA AAGTACAATC AGTAAGTGAC 818 TGAAGCTAAT TCATTAGCCT TTTATGTCTA TATATGATCA TAAAAATATC TGTAGAGTGC 509512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCTAAT TCATTAGCCT TTTATGTCTA TATATGATCA TAAAAATATC TGTAGAGTGC 878 ATCAGACAAG CAAAAAGTAT ATGGCAAGTG ATAGCACATT TCTTAGGGAA GGGATTTATG 509572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGACAAG CAAAAAGTAT ATGGCAAGTG ATAGCACATT TCTTAGGGAA GGGATTTATG 938 AGTTCAATGT TAAAATCCTC TCTATCAGTC GCCTCGCATT TTTAACTTAT CTAGGTTGCT 509632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCAATGT TAAAATCCTC TCTATCAGTC GCCTCGCATT TTTAACTTAT CTAGGTTGCT 998 TCCCTATTTT TTGCTACATA AGAACTAGAT GTATGTCACC ATATCAGAGT TATTTATATT 509692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCTATTTT TTGCTACATA AGAACTAGAT GTATGTCACC ATATCAGAGT TATTTATATT 1058 CACATGTTAT ATTCTAAATC CATATGTTGT TGAGATGTGT TCTTTAATTG ATCTCTTCAT 509752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACATGTTAT ATTCTAAATC CATATGTTGT TGAGATGTGT TCTTTAATTG ATCTCTTCAT 1118 CTCTATGCAG AGTATCCTAT CATAACATTA ACAATGTTAG ATCATACTTT TAGTGGGAGT 509812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTATGCAG AGTATCCTAT CATAACATTA ACAATGTTAG ATCATACTTT TAGTGGGAGT 1178 TGCATGGAGT TATTATTATC AAAGCTGTTA TTATTATCAA AGCTATTGAA GGTATTGTAC 509872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATGGAGT TATTATTATC AAAGCTGTTA TTATTATCAA AGCTATTGAA GGTATTGTAC 1238 ATTGTTACAT CTCCTTCACC CTTTATAGGT TTCTATATTA CAGATGCTCC TGCTATTGTT 509932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTTACAT CTCCTTCACC CTTTATAGGT TTCTATATTA CAGATGCTCC TGCTATTGTT 1298 TTAATTCTTT TTCGACCAGT ACAACCTGAT TAGCTATTCT TACTAATTCT TTTTATACAA 509992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATTCTTT TTCGACCAGT ACAACCTGAT TAGCTATTCT TACTAATTCT TTTTATACAA 1358 AAAAATATTT AGACATGGAT ATTTACACCA TCAAGTGTAA AATGTTACTT ACACTGCTTG 510052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATATTT AGACATGGAT ATTTACACCA TCAAGTGTAA AATGTTACTT ACACTGCTTG 1418 CATATGTAAG GGAAAAATAC TGCCAGCTCC GTTCAAGTTC CCCAGAGCCA TATAGACTAT 510112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATGTAAG GGAAAAATAC TGCCAGCTCC GTTCAAGTTC CCCAGAGCCA TATAGACTAT 1478 ATTGCTATTT TGCTTGATCT TTAATCTTAT GATAATGATT CTATGATTAA GGTTAATTAT 510172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTATTT TGCTTGATCT TTAATCTTAT GATAATGATT CTATGATTAA GGTTAATTAT 1538 GTATATCGTC GTCATGTATC TTGCATTTCA TTTGCTGAAT AATACACAAA TTGTTGTATA 510232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATATCGTC GTCATGTATC TTGCATTTCA TTTGCTGAAT AATACACAAA TTGTTGTATA 1598 ACAACATAAC TACATAATTG AGCTTAATTT TTGTAAAGAC CATCCAGTAC AACTTCTGAG 510292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACATAAC TACATAATTG AGCTTAATTT TTGTAAAGAC CATCCAGTAC AACTTCTGAG 1658 TTACATTGGT AACATAACAA CCGGCGTTAT TATACTGCTC TCATATGCTC TGATGAAATT 510352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACATTGGT AACATAACAA CCGGCGTTAT TATACTGCTC TCATATGCTC TGATGAAATT 1718 TCTTCCATAT ATACATTGTA CTTTGATAGC CTTTGTGTCT CTACTATTTG ATCTCACCAA 510412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCCATAT ATACATTGTA CTTTGATAGC CTTTGTGTCT CTACTATTTG ATCTCACCAA 1778 TTCGTTTTTA AAGCTTTCTC CTGCTTGCAT GAAGAGATTT TTTCTGTTGG TGTTGCTGAG 510472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGTTTTTA AAGCTTTCTC CTGCTTGCAT GAAGAGATTT TTTCTGTTGG TGTTGCTGAG 1838 TACGAAGAAT TTGTTCATCC ATGTGTTGCC AGTGCCTCTT CCAGTGTGAT ATGATGTGAA 510532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGAAGAAT TTGTTCATCC ATGTGTTGCC AGTGCCTCTT CCAGTGTGAT ATGATGTGAA 1898 TTGAGTATTC ATGCTCTGTT AGCCTCTTTT AAGTAGCTAA TGGAGGAAAT GATTCTCACC 510592 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGTATTC ATGCTCTGTT AGCCTCTTTT AAGTAGCTAA TGGAGGAAAT GATTCTCACC 1958 ATTTCAGTAG CTCCATTATG TCATTGATGA TTGAGTTACA CCCATTTAAA ATATTTAGTT 510652 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCAGTAG CTCCATTATG TCATTGATGA TTGAGTTACA CCCATTTAAA ATATTTAGTT 2018 TCTACTTTAG TTACCTCATC AAGGTATATT GTTTCCACTG AGATTCACTT GAGATGGAAT 510712 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTACTTTAG TTACCTCATC AAGGTATATT GTTTCCACTG AGATTCACTT GAGATGGAAT 2078 TTTAAACTAG CATTGATGTG TATCTTTCAT GCCATCTCTA CAAAACATGA AGGGCGCCAA 510772 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAACTAG CATTGATGTG TATCTTTCAT GCCATCTCTA CAAAACATGA AGGGCGCCAA 2138 AAGAATGTTA TCAGTTGATT ATGACTATAT ACACTGTTAG GATATGTCTT CAATCATTTT 510832 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATGTTA TCAGTTGATT ATGACTATAT ACACTGTTAG GATATGTCTT CAATCATTTT 2198 CTTTAAAAGA AGGATGGCTC CATTTTTGAG TCATGAAAAC ATTAGCAGTC TCGAGAATGA 510892 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAAAAGA AGGATGGCTC CATTTTTGAG TCATGAAAAC ATTAGCAGTC TCGAGAATGA 2258 CCTTCATTTA TTCATGCTTC ATCACATATC TCTATATTCT TTTTTTATTA GGTCGAAAAA 510952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCATTTA TTCATGCTTC ATCACATATC TCTATATTCT TTTTTTATTA GGTCGAAAAA 2318 GACATGGATG GATTGGATCC ATCACGGAAA GCTGATTTCC TGTTCATATC TGAGACGAAC 511012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACATGGATG GATTGGATCC ATCACGGAAA GCTGATTTCC TGTTCATATC TGAGACGAAC 2378 GTAAATTTCT TTTGAAGGTA CATTTCAATT TAGTTTGTGC ATCAACTGTT CAATCGGAAT 511072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAATTTCT TTTGAAGGTA CATTTCAATT TAGTTTGTGC ATCAACTGTT CAATCGGAAT 2438 GCTTTGCTAG ACATATCCTA ACCGTTACGA TGCAAAGGTA AAGCAATATC ATAGTCCATT 511132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTGCTAG ACATATCCTA ACCGTTACGA TGCAAAGGTA AAGCAATATC ATAGTCCATT 2498 TTTTTTTATA TTTTGTCTTT CAGTTGGTTT GCTTTTACAT GTCTGTGCTC AGATAGATTA 511192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTATA TTTTGTCTTT CAGTTGGTTT GCTTTTACAT GTCTGTGCTC AGATAGATTA 2558 TTTCACTGTT TAGTTCACCA GTCTATTTTA CACATGTTTT TTTCATTATT TGTGAAAGCA 511252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCACTGTT TAGTTCACCA GTCTATTTTA CACATGTTTT TTTCATTATT TGTGAAAGCA 2618 CACTTTTAAA TCCTAAAAGT TGTGCAGTCG ATCTGTTTCG TCAAACTGTA GTGTAGCCTG 511312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTTTAAA TCCTAAAAGT TGTGCAGTCG ATCTGTTTCG TCAAACTGTA GTGTAGCCTG 2678 CTGCCACTGT GCTTTTACAA GCTCTTTGTT TCCGCGTTGT ATATTTTGCC GGCTACTTAA 511372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCCACTGT GCTTTTACAA GCTCTTTGTT TCCGCGTTGT ATATTTTGCC GGCTACTTAA 2738 AAGGAACAGG GAAGAAAAAA ATGGAACCTA ACCTGAAGAA GTATATATGC ATTGTAGAAC 511432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAACAGG GAAGAAAAAA ATGGAACCTA ACCTGAAGAA GTATATATGC ATTGTAGAAC 2798 TATAAGGCTT ATGTTATTGC ATCCATACTT TGGTTAAGTG ATTATGCATG CTTTCGCTCA 511492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAAGGCTT ATGTTATTGC ATCCATACTT TGGTTAAGTG ATTATGCATG CTTTCGCTCA 2858 TAAACTTTGC CACGTGGCCA CATGGTAGCA GCACTTTGTA CTACTCCACT CCAAAAAAGA 511552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACTTTGC CACGTGGCCA CATGGTAGCA GCACTTTGTA CTACTCCACT CCAAAAAAGA 2918 TAGAACTTTT GGTAGAAAAA TTGGTTGCAT GTGTTTAGAA TTGTGATGCC AAGCGAAAAT 511612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAACTTTT GGTAGAAAAA TTGGTTGCAT GTGTTTAGAA TTGTGATGCC AAGCGAAAAT 2978 ATTATCTCTC TATATAAGTG GTTGATACTA TACTGTTTTA GCTGTACTAA CATTACTATT 511672 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ATTATCTCTC TATATAAGTG GTTGATACTA TACTGTTTTA GCTGTGCTAA CATTACTATT 3038 AAAACTTTCT ACTACCTTTG TCCCAAAATA TAAAAACTTC TGGCCCTATA TCTTGAAAGG 511732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACTTTCT ACTACCTTTG TCCCAAAATA TAAAAACTTC TGGCCCTATA TCTTGAAAGG 3098 TATGTTTAGG TACACAGCTC AAAATTGCGA TATATTTTGG GACGGAGGTA GTATACTTTT 511792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTTTAGG TACACAGCTC AAAATTGCGA TATATTTTGG GACGGAGGTA GTATACTTTT 3158 TTTTAGGTGT ACCGATGTCA CTAACCGCAC ATAACGGAGG ATTGTTGTTG ACTAGGGCAC 511852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAGGTGT ACCGATGTCA CTAACCGCAC ATAACGGAGG ATTGTTGTTG ACTAGGGCAC 3218 TTGCATGTTG CACTTAAAAA ACATCATTTT CTATCTGTTC ATTTTAGCTT TGCATATGTT 511912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCATGTTG CACTTAAAAA ACATCATTTT CTATCTGTTC ATTTTAGCTT TGCATATGTT 3278 TAATATGGAC CAACAGTAGG CATTTAGGTC TTCTGTTTTT AGCATCCAAT AGTCCAATGT 511972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATATGGAC CAACAGTAGG CATTTAGGTC TTCTGTTTTT AGCATCCAAT AGTCCAATGT 3338 GATTCTAGCG TATAGAGAGA AAAGGGGTAG CATTGAAACC TATGTAAACT CATTGTAATT 512032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCTAGCG TATAGAGAGA AAAGGGGTAG CATTGAAACC TATGTAAACT CATTGTAATT 3398 GACATGTAAT TTGCCCC-TT TTTTCTATTT ATTCAAACTT CCAATACCTT TTGGTTTTCT 512091 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| GACATGTAAT TTGCCCCTTT TTTTCTATTT ATTCAAACTT CCAATACCTT TTGGTTTTCT 3458 CCTTTAGCCT ATACACTATA TTTTTGTATG TGCAATTTTT TTATAAGGGT AGTTTATGGG 512151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTAGCCT ATACACTATA TTTTTGTATG TGCAATTTTT TTATAAGGGT AGTTTATGGG 3518 ATATAGACGA AAAATAAACC AATGCTATGG GTGAATAGTA TATGCATATT ATTCCTCGAA 512211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAGACGA AAAATAAACC AATGCTATGG GTGAATAGTA TATGCATATT ATTCCTCGAA 3578 CATATTGGAC TTCAATTGAT TCAGGCGATT GATTCAGGCG GCGCAGCGTA GTGTGCTTCT 512271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATTGGAC TTCAATTGAT TCAGGCGATT GATTCAGGCG GCGCAGCGTA GTGTGCTTCT 3638 ATTGCTAGTG AGTTTTATCT TTAACCAAGA GGAAGACCCT AGAACTGTCC CCTCTATGTG 512331 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTAGTG AGTTTTATCT TTAACCAAGA GGAAGACCCT AGAACTGTCC CCTCTATGTG 3698 TAACGGCTGC TAATTTTAAG CTGTTATAGA TGAGTTTTAT CCTTAAGGGT CTCCGGCCGT 512391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACGGCTGC TAATTTTAAG CTGTTATAGA TGAGTTTTAT CCTTAAGGGT CTCCGGCCGT 3758 TACAGATGAT TGGACACATG TGTAACCAAT TGTTTGTAAT GCCTGCTGAG CCGTTACAGA 512451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGATGAT TGGACACATG TGTAACCAAT TGTTTGTAAT GCCTGCTGAG CCGTTACAGA 3818 TAGATAGGTC TGTGCTATAT GTTTCTTAAT TTTTGGATGT TGAAAAATAA TTTTAAATGT 512511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATAGGTC TGTGCTATAT GTTTCTTAAT TTTTGGATGT TGAAAAATAA TTTTAAATGT 3878 CTTGACCGTC AAGTGCACAT ATTCTACATT TTGTAATATA TAAGCCACAT TTGTACAAAC 512571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGACCGTC AAGTGCACAT ATTCTACATT TTGTAATATA TAAGCCACAT TTGTACAAAC 3938 TACGGTTAAT TGGATCATGC TATTACAACT TCTTCG 512607 |||||||||| |||||||||| |||||||||| |||||| TACGGTTAAT TGGATCATGC TATTACAACT TCTTCG 3974 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32982171|dbj|AK072148.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129D08, full insert sequence 1 GACATTTCAT CGAACACCTT GTGTGCATGC TTCATCATCA CCGGTTGGAA CCGAAGCCGG 61 CGTAGCTGAC CGCGGGAACC GTCGCTCGGG CCGCCTCTAC TTCCTCTGCT GCCTTGGATC 121 AACGTCGGGA ACCACGCATC GAACACCTGC AAGCGTCGCC GACCGCTAGC CGCCCCTGTT 181 TCGTCCGCAC TGAGCTACGC GCCGCCGAAC TTCGCCATCC CGCTGTCTCT CGGTAAAACC 241 TCGCTCCTAT AGCTCCTCCT AGTCTAGTAC GGAGTAGAAG CTAAATTCCC CACCAGTTTT 301 GGTGATTAGC GCCCTTCGGC GTGCCGTCCC GGCCGCCGCT TCGCCATCGG CGGGCTCGCC 361 GTGAGTAGGT CACCTCGAGC ACTCTCCTTC CCACCTAGCT AGCAAAACGG AATCACCATA 421 AGCTGTACAA GCTCTTGCGC CAAACTAATT GGTTAGAGAC CTCGCCATTT GCCGAGTCCC 481 CTTGCACCCT AGAGCTCGGC CATGGTGGCC ATGCCGCGCC GCCCTGTGCT GTGGCCGCCG 541 GCGGGAGGTC GCCGGACCCT CCTCCGCGCC TCCCCTGACC GCCGCCGGGT CGCCCTCGTC 601 CGGGCTGGGC CGCACGCGCT GCGCCTCTGC TCTGCTCGAT GGCCGGCGCG AGGTAGAAGA 661 CGATGGGGAA AAAGGAAAAG AACAAGAGAG AGAGAGATTA TGACATGTGG GACCCACATC 721 TACTTAGCAC ACAGTAATTC TCTTCCAATG ATGATTATAC CTGTCCATGA CGCGTGGGTC 781 CGGATGATTA GAAATTTAAT TAAAACCAAT ATTAAGTTTA CTCTCCATGA CAAGCTGGAC 841 CCACTGGTAA TTAAAACAGC CGGTTTGGCC CTAGTCAACC TGGGCTGGTC CCACGTGTCA 901 GCCAATGTAT CTTATGGATA ATGCCATGAC TAAAAATAAA TCAATTATGA ACAGTATCAT 961 TTCACAATTA TTGGAATTAA TTCAAATTTG AATCTTTAAA CAAGTATAAC TCACTCATTT 1021 TAGCTCGGAT TTGAATGAAA CTTGGACCTA AATTCATATA AAATCAAGAT CTAGCTGATG 1081 GAATCACTTT TGCTATTTAT TTTTGTACTG TTGAATTTTG GTGATTTAAT TTGAATTCTA 1141 GTTGAATTCA AATCGAATCT TTCGCACGTA CATATAGATT CCGAGGGAGT GGTTGAGTTG 1201 ACTGCAGAAC AGGGACATCA AATCTGTGAG CAAGGCAAGT CATCACTAAT CTTTGAGCAT 1261 GTTGGACCTA TTGCGAACTT ATTTTGATTT AAATAAAGTT TGCATGCTAT TTATATGTGA 1321 ATGTCCTACT TTGTTATATG CCATACCTTT GATATTGATT ATCCATATAA TCTTTGTAAT 1381 CCATGATATC GTGTGTCTTT AGTCAATATT TGACAAATGC TTAGCCCATG CTAATTTAGA 1441 TCCATGCATA TTCATATTTA TCAAAATGCT TTATGCTTGG GCAATTACCT TAATTAGGGA 1501 AGGTAATTGA CATACGGCAT GTGGAGACAT GAGCGCCACA TTGCCATGAT AATGATGAGA 1561 TGATTTGTGA AAGAAAATTA AACTAAACAA ATGTTTTTGA CTGGGGCGGC TGGAGGACTT 1621 GGGTGGTGTC CGATAAAGGC TAGTGCCGTC CCTGGTCAGT TAAGTACCGA GCCATTAAGT 1681 TAAGCATGAA ACGACCCTAG TACAGCCGTA CTTCTCGAAT GGGTATAGAC CTAGTGGAGT 1741 AGATAGCCGA GCGGAGGCAG TACCCCTGCA TAGTGGTTTC ACTTAGGTGT GTGGACGAAC 1801 AAGCAGTCTG CTGGCGGATA CCCGATACGG ATGGCCAGAG ACTGACTTGT CAAGACTACA 1861 AGACTACAAG GAGATACCCA AAAGAGGACA GCATGGATTG GGTTCAACTA CAGGATGCAA 1921 TGTTAGGCTT TCGTGAGTTT TCCCCCTCGG GAGCGCCAGA ACTTCTCTCA CTGCTAGAAA 1981 CTTATGACGC CTAGAGTGCA TGAGGACTCA AGTTCATGGA GCGGGTATTG CCAAAGTGAG 2041 GTTGTTGAAA GGCTTTGCCG TGGCAAGTCT CATTCGTTGG GACATAGGCT CATGTGTTGG 2101 GCAAGTCGCG TAGTACGGGT AAAGTGTACA TCCACTGCAG TGTAAGTAAA CCAATCTATT 2161 CGAATAGCCG TGCTCGCGGT TATTGAGCAC CGGGACATGT ATTACACTTG GCTAGACTCT 2221 AAACTCTTAA AATGATGGGT GGGATATGCA TAATGATTTT TAGACTGGTG GATCAACTTC 2281 TCGAGAGGCG AGAAGGGGTA GACCCCAGAA AACCATGACA ACCAGTGGCG GGAAGCTATC 2341 CTTGGGAACA CAATGGATGG TGGACAGAAC CGTCGCTGTT TAATGAACTA CGGAGATAAA 2401 ATTTGATCAG TTATGCTAGG TCTTAGGCTT GTGAAAAGAA TAGCAAAATT GGCTTTATGC 2461 AAATAAACCA TTAGCCTTTC ATTGAATATC CTCTATCATA TGCATCGTTG TTGTGGTGGC 2521 TTGCTGAGTA CGGTTGGTAC TCACTCTTGC TATTTACAAA TTCCATCAGA AGCCGGTGAT 2581 GAAGTCTCGG ATGACCCATA TGCTTACTAC CAGGAGGGTG AAGAAGATGG TGGCGCTTAG 2641 TAGGTCTTAG TTACGGTCGT CGCCTGTGGC AATGGCGTCG CCGCTGCCTT GATTCCGCTG 2701 CTTATCTATT TCTGCTTTTG GGATGTATTC CGGACCGTTT GGTCCTATGT TCTAGACTAT 2761 GCCTGCGGGC CTATGATGTA ATTATTCGCG CTAGACAATC TTTGTATGCG CACTTGATAT 2821 TTCAGCAATG TAATCGTGAG TACCAGACTA CTTGATACAG GGAAATGGTA CTATTC Genomic Template: file=OSchr10, strand=-, from=526499, to=524486, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 525741 524785 ( 957 n); cDNA 1923 2876 ( 954 n); score: 0.861 MATCH OSchr10-v3- 32982171+ 0.861 957 0.475 G PGS_OSchr10-v3-_32982171+ (525741 524785) Alignment (genomic DNA sequence = upper lines): TTAATGCATG TGTGAGTCTT TCCTTCCCGG GAGCGCCAGA ACTCCTCTCA CTGCTAGAAA 525682 || | || | |||||| || ||| | ||| |||||||||| ||| |||||| |||||||||| TT-AGGCTTT CGTGAGT-TT TCCCCCTCGG GAGCGCCAGA ACTTCTCTCA CTGCTAGAAA 1980 CCGTGTACGC CTAGAGTGCA TGAGGACTCA AGTTCATGGA GCGGGTACTG CCAAAGTGAG 525622 | |||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| CTTATGACGC CTAGAGTGCA TGAGGACTCA AGTTCATGGA GCGGGTATTG CCAAAGTGAG 2040 GTGGTTGAAA GGCTTTGCCG TGGCAATTCT CATTCGTTGG GACGTAGGGT CATGTGTTGG 525562 || ||||||| |||||||||| |||||| ||| |||||||||| ||| |||| | |||||||||| GTTGTTGAAA GGCTTTGCCG TGGCAAGTCT CATTCGTTGG GACATAGGCT CATGTGTTGG 2100 GCAAGTCACG GAGTACGGGT AAAGTGTACA TCCACTGCAG TGTGAGTAAA TCAATCTATT 525502 ||||||| || ||||||||| |||||||||| |||||||||| ||| |||||| ||||||||| GCAAGTCGCG TAGTACGGGT AAAGTGTACA TCCACTGCAG TGTAAGTAAA CCAATCTATT 2160 CGAATAGCCG TGCTCGCGGT TATTGAGCAC CGGGACATGT ATTACACTTG GCTAGACTCA 525442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CGAATAGCCG TGCTCGCGGT TATTGAGCAC CGGGACATGT ATTACACTTG GCTAGACTCT 2220 AATTTCCTAA ATATGAAAGG GATGGGATCT GCATGATGAT TTTGAG-CTG GTGGATCAAC 525383 || || ||| | ||| | || | |||||| | |||| ||||| ||| || ||| |||||||||| AAACTCTTAA A-ATG-ATGG G-TGGGATAT GCATAATGAT TTTTAGACTG GTGGATCAAC 2277 TTCTCGAGAG GCGAGAAGGG GTAAACCCCA GAAAACAATG ACGACCAGTA ACGGGAAGCC 525323 |||||||||| |||||||||| ||| |||||| |||||| ||| || |||||| |||||||| TTCTCGAGAG GCGAGAAGGG GTAGACCCCA GAAAACCATG ACAACCAGTG GCGGGAAGCT 2337 ATCTTTGGGA AGACAATGGA TGGTGAACAG AACCGTTGCT GTGTAAT-AA CCACTGGAAT 525264 ||| |||||| | |||||||| ||||| |||| |||||| ||| || |||| || | || ||| ATCCTTGGGA ACACAATGGA TGGTGGACAG AACCGTCGCT GTTTAATGAA CTAC-GGAGA 2396 TAAAACTTGA CTAGTTTATG CTAAATCTTA GGCTTGTGAA AAAAATTGTG AAACTAGCTT 525204 ||||| |||| || ||||| ||| ||||| |||||||||| || ||| | ||| | |||| TAAAATTTGA TCAG-TTATG CTAGGTCTTA GGCTTGTGAA AAGAATAGCA AAATTGGCTT 2455 TACGCAAATA AACCAAAGGC CACACCTTGA ATA-CCTCTA TCATACGCAT TGTTGTTGTG 525145 || ||||||| ||||| || | | |||| ||| |||||| ||||| |||| ||||||||| TATGCAAATA AACCATTAGC CTTTCATTGA ATATCCTCTA TCATATGCAT CGTTGTTGTG 2515 GTAGCTTGCT GAGTACGGTT GGTACTCACT CTTGCTA-TT ACAAATTTAA TCAGTGGATG 525086 || ||||||| |||||||||| |||||||||| ||||||| || ||||||| | |||| | | GTGGCTTGCT GAGTACGGTT GGTACTCACT CTTGCTATTT ACAAATTCCA TCAGAAGCCG 2575 GCAATGAAGT CGAGGAGGAT CCCTATGCTT ATCTTCAGGA GGATGCGGAG GATGACGGCG 525026 | ||||||| | ||| || || ||||||| | ||||| || || || |||| |||| GTGATGAAGT CTCGGATGAC CCATATGCTT ACTACCAGGA GGGTGAAGAA GATGGTGGCG 2635 CCCCGTAGAT GTTAGTTACG GTCGTTGCCT GTGGCAATGG CAAGGCCGCT GCTTAAATTC 524966 | |||| | ||||||||| ||||| |||| |||||||||| | |||||| || | |||| CTTAGTAGGT CTTAGTTACG GTCGTCGCCT GTGGCAATGG CGTCGCCGCT GCCTTGATTC 2695 CGCTGCCTTA TCTATTTCTG CTTTT-GCAT GTATTCCAGA CCGTTCGGGC CTATGTTCTG 524907 ||||| |||| |||||||||| ||||| | || ||||||| || ||||| || | ||||||||| CGCTG-CTTA TCTATTTCTG CTTTTGGGAT GTATTCCGGA CCGTTTGGTC CTATGTTCTA 2754 GTCTATGCAT GCGGGCCTAT GATGTAATAA TTCGCGCTAG ACAATCTTTG TATGTGCACT 524847 | |||||| | |||||||||| |||||||| | |||||||||| |||||||||| |||| ||||| GACTATGCCT GCGGGCCTAT GATGTAATTA TTCGCGCTAG ACAATCTTTG TATGCGCACT 2814 TGATATTTCA GCAATGTAAT CGTGAGTACC AGACTATTTG ATCCAGGGAA ATGGTACTAT 524787 |||||||||| |||||||||| |||||||||| |||||| ||| || ||||||| |||||||||| TGATATTTCA GCAATGTAAT CGTGAGTACC AGACTACTTG ATACAGGGAA ATGGTACTAT 2874 TA 524785 | TC 2876 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32993184|dbj|AK107975.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-D12, full insert sequence 1 AAGATCAACC CCTCATCTGT TTCTCTCTTC CCCAAAGCTC TTGCTCCATC TCAGAGGAAA 61 GAAAACACGC CGCCGCCGGG TGTCGAACAC CTGGTGGGCG GGGGCCGCGC CGCCGCCGCA 121 GGGCCTCTCG GCCGGTGTGG GTGGCAGGGT GTGTTGAGGA GGTGCCCGCG TTGCTGTTGC 181 TACTGTTGGA AGGAGCCAGG AGCCGCTACG CGAGGGAGGA CGAGCGTCAA ACACCTGCAA 241 ACGTCGCCGA CCGTCGTCTG CCCCTGTTTC GGTTGCACCA CGCCGCGCGC CGTCAAACTC 301 CGCCGTTCCG CCACTTCGTC GTAAGCCCTC GCGCCTGTAG TATTGCCTGG ACACCTAGAA 361 GCCAGCGGCC CCCTCGATTT GGGGTGTGCG CCGCCGTAAC CGTGCCGACT CCGGCCGCCA 421 CCGCGCCATG GCCGAGCTCA TCATGGAGGG ACCTCGTTCC AATACAACCT AGGCTAGATT 481 TTTGCTTCTA TATGCTCCAT GTGGACCCTA GATGGTTGAA TCGTCGTTGG TTACGCTCAC 541 ATTGGTCCTC ATTGTGCCGC CGCCGATTTT GGGATCTCGG CGCCGTCGAC CGCCGTCGCG 601 CCGCGCGCCG GACGATCGCC GCGCTTCGCC GCCGCCGGCG GCGGGTCTCT GGTGATGCGC 661 CACCGCTCGC CCCACCGTGC GCCGAGCCGT TCCGGCTCGG GCCGTCGCAT CATCACGCGC 721 CGCTCCTCTG CTCCGTCGCG AGCGGAAGGA AGAAGACGAC GGGGAGAAAG AAAAGAACGA 781 GAGAGGGAGA GATTATGACA TGTGGACCCC ACTTCATTAG TGTACAGTAA TCCTCAAACT 841 AATGATATTA TTGTGAACCT ATGACATGTA GGCCCGGATG CTTAGAAATC TAATTAAATT 901 GGTTTTTAAG TAAATGTCTC AATGACATGA GGGTCCCACC AAAGGTTAAA GGTCCGGCTT 961 GACCTCACCA ACAGGGGGCC GGACCCACCT GTCAATGACA CAGCAGGATT TCCTTTAAAG Genomic Template: file=OSchr10, strand=-, from=528047, to=526568, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 527739 526800 ( 940 n); cDNA 66 1006 ( 941 n); score: 0.855 MATCH OSchr10-v3- 32993184+ 0.855 940 0.922 C PGS_OSchr10-v3-_32993184+ (527739 526800) Alignment (genomic DNA sequence = upper lines): CGCGCCGCCC GCCGGGTGTC GAACACCTGG TGAGCGGGGG TTGCGCCGCC GCCGCAGGGC 527680 | ||||| || |||||||||| |||||||||| || ||||||| |||||||| |||||||||| CACGCCG-CC GCCGGGTGTC GAACACCTGG TGGGCGGGGG CCGCGCCGCC GCCGCAGGGC 124 CTCTCGGCCG ATGTGGGTGG CGGGGTGTGG AGAGGAGGTG CTCGCACTGC TGTTACCGCC 527620 |||||||||| ||||||||| | ||||||| ||||||||| | ||| ||| |||| | | CTCTCGGCCG GTGTGGGTGG CAGGGTGTGT TGAGGAGGTG CCCGCGTTGC TGTTGCTACT 184 ATTGGAGGGA GCCGGGAGCC GTTGGACGAA GAGGGCCGGG CGTCGAACAC CTTCAAGCCT 527560 ||||| ||| ||| |||||| | | ||| | || || | |||| ||||| || ||| | | GTTGGAAGGA GCCAGGAGCC GCTACGCGAG GGAGGACGAG CGTCAAACAC CTGCAAACGT 244 CGCCGACCGC CGTCTGCCCC TATTTCGGCC GCACCGCGCC GCACGCCGTC GAACTCCGCC 527500 ||||||||| |||||||||| | |||||| ||||| |||| || ||||||| ||||||||| CGCCGACCGT CGTCTGCCCC TGTTTCGGTT GCACCACGCC GCGCGCCGTC AAACTCCGCC 304 GTTCCACCAC TCCGTGGTAA GCCCTCGCGC CCGTAGTATT GCCTGGACAC CTAGAAGCTA 527440 ||||| |||| | ||| |||| |||||||||| | |||||||| |||||||||| |||||||| | GTTCCGCCAC TTCGTCGTAA GCCCTCGCGC CTGTAGTATT GCCTGGACAC CTAGAAGCCA 364 TCGGCCCCCT CGATTTGGGG TGTGAGCCGC CGTAGCCGTG CCGCCTCCGA CCGCCACCGC 527380 ||||||||| |||||||||| |||| ||||| |||| ||||| ||| ||||| |||||||||| GCGGCCCCCT CGATTTGGGG TGTGCGCCGC CGTAACCGTG CCGACTCCGG CCGCCACCGC 424 GCCATGGCCG AGCTCACCGT GGAGGGACCT CGTTCCAATG CAACCTAGGC TAGGTTTTTG 527320 |||||||||| |||||| | | |||||||||| ||||||||| |||||||||| ||| |||||| GCCATGGCCG AGCTCATCAT GGAGGGACCT CGTTCCAATA CAACCTAGGC TAGATTTTTG 484 CTTCTATATG CTCCATGTGG ACCCGAGATG GTTAAATCGT CGTCGGTTGC GCTCGTATTG 527260 |||||||||| |||||||||| |||| ||||| ||| |||||| ||| |||| | |||| |||| CTTCTATATG CTCCATGTGG ACCCTAGATG GTTGAATCGT CGTTGGTTAC GCTCACATTG 544 GTCCCCATTG TGCCGCCGCC GATTTTGAGA TCTCGGCGCC GCCACACGCC GTCGCG--TC 527202 |||| ||||| |||||||||| ||||||| || |||||||||| | | |||| |||||| | GTCCTCATTG TGCCGCCGCC GATTTTGGGA TCTCGGCGCC GTCGACCGCC GTCGCGCCGC 604 GCGCCGAGCA TTCGCCGCGT TTCGCCGTCG CCGCCGGCGA GCATTCGGTG GTGCCCCGCC 527142 |||||| | |||||||| ||||||| || ||| ||||| | | |||| ||| || || GCGCCGGACG ATCGCCGCGC TTCGCCGCCG CCGGCGGCGG GTCTCTGGTG ATGCGCCACC 664 GCTCGCCCCA CCATGCGCCG AGCCGTCCCG GCTCGGGCCG TCGCACCGCC GCGCGCCACT 527082 |||||||||| || ||||||| |||||| ||| |||||||||| ||||| | | |||||| || GCTCGCCCCA CCGTGCGCCG AGCCGTTCCG GCTCGGGCCG TCGCATCATC ACGCGCCGCT 724 CCTCTGTCCA GCCGCGTGCG CGAGGAAGAA GACGAC-GGG AGAGAG-AAA GAACGAGAGA 527024 |||||| | | |||| ||| |||||||| |||||| ||| ||| || ||| |||||||||| CCTCTGCTCC GTCGCGAGCG GAAGGAAGAA GACGACGGGG AGAAAGAAAA GAACGAGAGA 784 GGGAGAGATT ATGACATGTG GACCCCACTT CATTAGTGCA CAGTAATCCC CAAACTAATG 526964 |||||||||| |||||||||| |||||||||| |||||||| | ||||||||| |||||||||| GGGAGAGATT ATGACATGTG GACCCCACTT CATTAGTGTA CAGTAATCCT CAAACTAATG 844 GTATTATTAT GAGTCTATGA CATGTGGGCC CGGATGCTTA GAAATTTAAT TAAATGAGGT 526904 ||||||| | || |||||| ||||| |||| |||||||||| ||||| |||| ||||| | | ATATTATTGT GAACCTATGA CATGTAGGCC CGGATGCTTA GAAATCTAAT TAAATTGGTT 904 TTTAAGTAAA TGTATCAATG ACATGTGGGT CCCACCGGTG ATTAAAGGGC TGGCTTGACC 526844 |||||||||| ||| |||||| ||||| |||| |||||| | ||||||| | ||||||||| TTTAAGTAAA TGTCTCAATG ACATGAGGGT CCCACCAAAG GTTAAAGGTC CGGCTTGACC 964 TCAGTCAACA AAGGGTTCGG CCCCACCTGT CAGTGACACA TCGC 526800 ||| |||| | ||| ||| ||||||||| || ||||||| | TCA-CCAAC- AGGGGGCCGG ACCCACCTGT CAATGACACA GCAG 1006 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32974492|dbj|AK064474.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-H10, full insert sequence 1 ATAATGAGAA CACAATGACT AGATTTTTCA GAGGGCTTAA TTTCAATATT CAGGCTGGGC 61 TTGTTAATGT GACATATAAT CATATAGGCC AATTGTTCAT GCTTGCTTGC ATTGTTGAGC 121 GCAAAATTTT GGAGAATCCA ATGGAGCAAC AAGATATGCT TGTGCCTCCT ATCGCTGATG 181 TTTTGCAGGA AGTTCAGAAA AGTCTCCAAA ATGAGAAGAA CGATATGTTT GAGATGTCAC 241 TTCCATCACT CGCGAATGAG GAGAAGGCTG ATGCAGCTAC ATTATCTGAA GAAAGTTCGC 301 AAGGTAGATT AAATGGTGCT GAGAGAAATG AAGGTGAGTA TTCTCAAGGT GAGCTACACT 361 TGTCCACTTT TCATGCTATA TTAGAGCAAC CATTAGTGGA ATCAATTACT GAGTTGCCTT 421 TGTCACAAGT TGATTTACTT GCTGTTCCTT GTGATAAAGA AGAGTTGTGT GATAATGTTT 481 CACTTATATC CATGCCACAA CTAGTGAATG AACATGTTAG TTCTACTATT TCTTTGTGTG 541 CTGATTCTAA GCATGTTGTT CACATTGCTA ATGAAGTAGA GGAACGTGAA TTGCTATCTT 601 CTTTAAATAC TTTGGGCTAT GTTCAGTTTG ATGATTTTTG TGAGCTCGGT AATTTGAAGG 661 AGAAATTATT TGCTAAATCT GATTTGCCAT GTCCAACTAA TGCTATTTTT CATATCTTTG 721 GCGAATATAA TGATAGAGGA ATATTTTTGG TGCATAGAGT TTACATTTGT TCAGATTTAG 781 AACATCTTGT AGTTCCGGAT AAAATATGCA AGCTAGAGAA AAATGTTATT GCTAACCAAA 841 TTGTCTCGAG TTTGCCTTGT TTTGATTGGA AGAAACAGGT TGTTGTAAAT GGACTACGCA 901 AAGAGCACCA TATGGAAAAA CCGAGGACGG TTTTCCGTGA AGAAGGGGAG GATGATGTGA 961 CCATGGCTAC CACGGATGCA ACCATTGCTC ACATCATGGA TGAACAAGAA GATATCGAGA 1021 TCAAGTACTC CAAGTGCTGG AATCCGATTC GGCCACCTAC TACACTGCTG ACTTCAAACG 1081 GCCACCGAAT CTGCATACGA CCTCCGTTTT CGGCCCGTGA GTACTTGATG GAAAGCTCTC 1141 GGAGCCCTCT TTCTAACGGA TCCAGCCTCT TCTCTGAATT CTATCTCGTG TGGCCAGAAT 1201 CACAGGAACT AGGTGTTGCA TCACCTATAA TGGGCCTATG GGCTTGTAAC TTCATTTGGG 1261 ACCCCGGCCC AGGTGGGGCC CATGTGGGGT GCGCCCCAAG CTGGTGGAGC ACGACCCTAG 1321 GCACCCCTAG GTCGTCCTCC CACCCCTATA TATAGCTAGT TACCCCTTCA GGGTTTCTCG 1381 GGTTTTTGTT AGATTAAAGT TTAGCCATTG CTACTTGCTT GCAGCGCGCG TGTCGGCTAG 1441 ACCGTCCGTC TGCTTGTTCT TCGGAACCCC AACTTATCAT TTGTATTAAA TTCCTATTTG 1501 CAATATCAGA TTGCTTT Genomic Template: file=OSchr10, strand=-, from=536619, to=534920, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 536619 535224 (1396 n); cDNA 53 1455 (1403 n); score: 0.860 MATCH OSchr10-v3- 32974492+ 0.860 1396 0.920 C PGS_OSchr10-v3-_32974492+ (536619 535224) Alignment (genomic DNA sequence = upper lines): GGCTGGGCTT ATTAACGTAA CATATAATCA TATAAGCCAC TTGTTCATGC TTGCTTGCAG 536560 |||||||||| |||| || | |||||||||| |||| |||| |||||||||| ||||||||| GGCTGGGCTT GTTAATGTGA CATATAATCA TATAGGCCAA TTGTTCATGC TTGCTTGCAT 112 TGTTGAGAGC AATATTTTAA AGAGCCCAAG GGAGAAACGA GCTATGCTTG TGCCTCCTAT 536500 ||||||| || || ||||| ||| |||| |||| ||| | | |||||||| |||||||||| TGTTGAGCGC AAAATTTTGG AGAATCCAAT GGAGCAACAA GATATGCTTG TGCCTCCTAT 172 TAGTGACATT TTGCAGGGAG CTCAGAACAT TCACCATGAG GAGAAGAGCA ATATGATCGA 536440 ||| || ||||||| || |||||| | || ||| | ||||||| | ||||| | || CGCTGATGTT TTGCAGGAAG TTCAGAAAAG TCTCCAAAAT GAGAAGAACG ATATGTTTGA 232 GATGCCATCT ACATCGCTCA CGAAGGAAGA AGAGAAGATT GATGCACCCA CATCATTCGA 536380 |||| || | |||| ||| |||| | || |||||| | |||||| | | ||| || || GATGTCACTT CCATCACTCG CGAATG-AG- -GAGAAGGCT GATGCAGCTA CATTATCTGA 289 AGAGAGAATC ACAA-GTAAT CTTAATGGTG CAGCAATAAA TCAAGGTGGG TGTGTTGTTA 536321 ||| || || ||| ||| | ||||||| | | | ||| | |||||| | | | | AGAAAG-TTC GCAAGGTAGA TTAAATGGTG CTGAGAGAAA TGAAGGTGAG TATTCTCAAG 348 ATGAATTGAA TTTGTCCACT TTTCATGCTA TAGTAGAGCA ACCATTAGTG GAACCAATTG 536261 ||| | | ||||||||| |||||||||| || ||||||| |||||||||| ||| ||||| GTGAGCTACA CTTGTCCACT TTTCATGCTA TATTAGAGCA ACCATTAGTG GAATCAATTA 408 CTGAGATGCC TTTGTCACAA GTTGATTTAC TTGTTGTTCC TTGTGATAAA GAAGAGTTGT 536201 ||||| |||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| CTGAGTTGCC TTTGTCACAA GTTGATTTAC TTGCTGTTCC TTGTGATAAA GAAGAGTTGT 468 GTCATAATGT TTCACTTATA TCCATGCCAC AACTAGTGAA TGAACATGTT AGTTCTACTA 536141 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATAATGT TTCACTTATA TCCATGCCAC AACTAGTGAA TGAACATGTT AGTTCTACTA 528 TTTCTTTGTG TGCTGATTCT AAGCATGTTG TTCACATTGC TAATGAAGTA GAGGAACGTG 536081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTTGTG TGCTGATTCT AAGCATGTTG TTCACATTGC TAATGAAGTA GAGGAACGTG 588 AATTACTATC TTCTTTAAAT ACTTTGGGCT ATGTTCAGTT TGATGATTTT TGTGAGCTCG 536021 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGCTATC TTCTTTAAAT ACTTTGGGCT ATGTTCAGTT TGATGATTTT TGTGAGCTCG 648 ATAATTTGAA GGAGAAATTA TTAGCTAAAT CTGATTTGCC ATGTCCAACT AATGCTATTT 535961 ||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GTAATTTGAA GGAGAAATTA TTTGCTAAAT CTGATTTGCC ATGTCCAACT AATGCTATTT 708 TTCATATCTT TGGCGAATAT AATGATAGAG GAATATTTTT GGTGCATAGA GTTTACATTT 535901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATATCTT TGGCGAATAT AATGATAGAG GAATATTTTT GGTGCATAGA GTTTACATTT 768 GTTCGGATTT AGAACACCTT GTAGTTCTGG ATAAAATATG CAAGCTAGAG AGACATGTTA 535841 |||| ||||| |||||| ||| ||||||| || |||||||||| |||||||||| | | |||||| GTTCAGATTT AGAACATCTT GTAGTTCCGG ATAAAATATG CAAGCTAGAG AAAAATGTTA 828 ATGCTAATCA TATTATCTCG AGTTTGTCTT GTTTTGATTG CAAGAAACAG GTTGTTTTCA 535781 |||||| || ||| ||||| |||||| ||| |||||||||| ||||||||| |||||| | | TTGCTAACCA AATTGTCTCG AGTTTGCCTT GTTTTGATTG GAAGAAACAG GTTGTTGTAA 888 GTGGACCAAG CGAAGAGCAC CATATGGAAA AACCGAGGAC GGTTTTCCAT GAAGAAGGGG 535721 ||||| | | | |||||||| |||||||||| |||||||||| |||||||| | |||||||||| ATGGACTACG CAAAGAGCAC CATATGGAAA AACCGAGGAC GGTTTTCCGT GAAGAAGGGG 948 AGGATGATGT GACCATGGCT ACTATGGATA CGACCATTGC TCACATCATG AATCAACAAG 535661 |||||||||| |||||||||| || | |||| | |||||||| |||||||||| || |||||| AGGATGATGT GACCATGGCT ACCACGGATG CAACCATTGC TCACATCATG GATGAACAAG 1008 AAGACATCAA GATCAAGTCC TCTATGTGCT GCAATCTGAT TCGGCCACGT GCTACATTGC 535601 |||| ||| | |||||||| | || | ||||| | |||| ||| |||||||| | ||||| ||| AAGATATCGA GATCAAGTAC TCCAAGTGCT GGAATCCGAT TCGGCCACCT ACTACACTGC 1068 TAACTTCAAA CGGCCGCCAA ATCTACATAC GTGCTCCGTT TTGGGCCCGT GAGTACTTGA 535541 | |||||||| ||||| || | |||| ||||| | ||||||| || ||||||| |||||||||| TGACTTCAAA CGGCCACCGA ATCTGCATAC GACCTCCGTT TTCGGCCCGT GAGTACTTGA 1128 TGGAAAGCTC TCGAAGTCCT CCTTCCAACG GATCCAGCCT CATCTCGGAA TTCTATCTCG 535481 |||||||||| ||| || ||| | ||| |||| |||||||||| | |||| ||| |||||||||| TGGAAAGCTC TCGGAGCCCT CTTTCTAACG GATCCAGCCT CTTCTCTGAA TTCTATCTCG 1188 TTTGGCCGCA ATCACAGAAG CAAGGTGCTG CGTCACCTAT ATTGGGCCAA TGGGCTTGTA 535421 | ||||| | ||||||| | | ||||| || | |||||||| | |||||| | |||||||||| TGTGGCCAGA ATCACAGGAA CTAGGTGTTG CATCACCTAT AATGGGCCTA TGGGCTTGTA 1248 ACTTTGTTT- -GA----GAC CC---T--GG CCCATGTGGG GTGCGCCCCA ATCTGGTGGA 535372 |||| ||| || | | || | || |||||||||| |||||||||| | |||||||| ACTTCATTTG GGACCCCGGC CCAGGTGGGG CCCATGTGGG GTGCGCCCCA AGCTGGTGGA 1308 GCACGACCCT TGGACCCTCT TGGTCATCCT CCCACCTCTA TAAATAGTTA GGTACCCCTT 535312 |||||||||| || || || |||| |||| |||||| ||| || |||| || | |||||||| GCACGACCCT AGGCACCCCT AGGTCGTCCT CCCACCCCTA TATATAGCTA GTTACCCCTT 1368 CAGGGTTTCT TGGGTTTTGA TTAATTGTAA GTTTAGCCAT TGCTACTTCG CTTGCAGCGC 535252 |||||||||| ||||||| ||| | || |||||||||| |||||||| | |||||||||| CAGGGTTTCT CGGGTTTTTG TTAGATTAAA GTTTAGCCAT TGCTACTT-G CTTGCAGCGC 1427 GCGTGTCGGC TAGACCGTCC GTCTGCTT 535224 |||||||||| |||||||||| |||||||| GCGTGTCGGC TAGACCGTCC GTCTGCTT 1455 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32970078|dbj|AK060060.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F11, full insert sequence 1 ATATCGACCA GTATATATGA AAAGTCACGG AGGAGGCCAG CAGCCAGCAG CCAGCAGCCA 61 GCAGAACACC CAGACGGATA TTAATTTAGA ATGAGTATTG TGGTGAGCAA GTCAGCGCCG 121 GTGGTCGTCC GGCCATCGGA GCCGGCCACA TCGACGGCCG ACAAGATCCT TCTGTCAACT 181 TTGGACAAGC CTGTTGCCAC GATACCAGTG ACCGTGCTAC TTGCGTTCGA CCACCCCATC 241 CATGACGCCA CCGCGGAGAC CATCAAGACG GCTCTCGCTC AATCACTCGT CCACTACTAT 301 CCTATCGCCG GCCGCATTTC CTGCGACAAT GACGACGGCG GCCATTTCTA CATCGACTGC 361 ACCGGCGAGG ATCTCGGGGT CACGTTCGTG GCCGCGTCCG CCAACTGCAC CATGGAGGAG 421 CTCATGTGTC TCGTCGACGA CCAGGCTCCC GACGACGAGA CAGCGGTGGT GCAGCAGCTC 481 GCCTTCAACT GCACGCCCGA CGACCTTCAT CACCGTCTGC TGTGGGTGCA GGTCACCACT 541 CTCAACTGTG GAGGCTTCGT CGTCGGGGTG ACATGGAGCC ATGGCGTGGC TGACGGTCCC 601 GGCATAGCAC AGTTCATACA AGCCGTCGGC GAGCTCGCCC GTGGCCTGCC ATCGCCGTCC 661 GTCGTCCCGG TCAGGTTGGA CGACAAGATC GCAACCCAAG CCGTACCTCC CTTCACCATG 721 GCCGTTCATC GCTTCATATC CGGCCTCAAG CCAGTATCAA ACCTCGACGT ACGCAACGTC 781 ACCGTCTCAT CTAGCCTTAT CAACCACATC ATCGTCGGAG CTCGTCGTCG TGCCACCGTG 841 TTCGAGGCGG TCGCCGCCGT GCTCTGGCAG TGCCGTACAC GGGTGGTGAT GACGGATCCT 901 GAGGCCCCCG CCGTGCTGCT CTTCGCGGTG AACGCACGCA AGTACCTCGG CGCCAAGGAC 961 GGCTACTACG GATGCTGCAC CGCCATGCAC ATGGCCGTGT CCAAGTCCGG CACGGTGGCC 1021 AACGGCGACA TCATGAAGTT GGTCGGCATC ATACGCCGCG CCAAGGAGCA GATACCGGAG 1081 CAGCTGAAGG CAGACGACGG CGAGATGATG CTACGGACGA TGGTAGGGGA GAAGCAGGTG 1141 AATGGATACG AGAGCCTGCT CTACTTGACA TCCTGGCGAA ACATCGGGTT CGAGGACGTC 1201 GATTTCGGCA GCGGGAAGAC GGCGAGGGTG ATGACCTACC CGCCGAGGAT GCTGTCCATG 1261 ATGCCCAGGA TTGCGCCCAT CTGCTTCATG CTCAAGGCCA CAGAGGAAGG GGTCAGGGTC 1321 ATGTCAGACT GTGTTACGGC TGACCACGCC GATGCCTTCT ATCAAGAAAT AGCCAAGCTC 1381 AAAGCCACCA CCTGATTATA ACTATATATG CGAGCTATCT ATACCTTCTT CAATATGCCA 1441 ATTATGATTT ATCTACAATA AAAATTTGAA TATATATACC GTGCAAGAGC ATGCATGAAC 1501 AAGT Genomic Template: file=OSchr10, strand=+, from=561729, to=563956, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 562029 562092 ( 64 n); cDNA 1 64 ( 64 n); score: 1.000 Intron 1 562093 562216 ( 124 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 562217 563656 (1440 n); cDNA 65 1504 (1440 n); score: 1.000 MATCH OSchr10-v3+ 32970078+ 1.000 1504 1.000 C PGS_OSchr10-v3+_32970078+ (562029 562092,562217 563656) Alignment (genomic DNA sequence = upper lines): ATATCGACCA GTATATATGA AAAGTCACGG AGGAGGCCAG CAGCCAGCAG CCAGCAGCCA 562088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCGACCA GTATATATGA AAAGTCACGG AGGAGGCCAG CAGCCAGCAG CCAGCAGCCA 60 GCAGGTATGT ATGTATGTGT GTTTATAGCA AATCCGTTAT ATTATATGGT TGTAATCTCT 562148 |||| GCAG...... .......... .......... .......... .......... .......... 64 ATAGTACTAG ATCTGTATGA CTACTGTATT AATTATATGC TTACGTGATC CTAACTTATC 562208 .......... .......... .......... .......... .......... .......... 64 AATGGTAGAA CACCCAGACG GATATTAATT TAGAATGAGT ATTGTGGTGA GCAAGTCAGC 562268 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AA CACCCAGACG GATATTAATT TAGAATGAGT ATTGTGGTGA GCAAGTCAGC 116 GCCGGTGGTC GTCCGGCCAT CGGAGCCGGC CACATCGACG GCCGACAAGA TCCTTCTGTC 562328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGGTGGTC GTCCGGCCAT CGGAGCCGGC CACATCGACG GCCGACAAGA TCCTTCTGTC 176 AACTTTGGAC AAGCCTGTTG CCACGATACC AGTGACCGTG CTACTTGCGT TCGACCACCC 562388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTGGAC AAGCCTGTTG CCACGATACC AGTGACCGTG CTACTTGCGT TCGACCACCC 236 CATCCATGAC GCCACCGCGG AGACCATCAA GACGGCTCTC GCTCAATCAC TCGTCCACTA 562448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCCATGAC GCCACCGCGG AGACCATCAA GACGGCTCTC GCTCAATCAC TCGTCCACTA 296 CTATCCTATC GCCGGCCGCA TTTCCTGCGA CAATGACGAC GGCGGCCATT TCTACATCGA 562508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATCCTATC GCCGGCCGCA TTTCCTGCGA CAATGACGAC GGCGGCCATT TCTACATCGA 356 CTGCACCGGC GAGGATCTCG GGGTCACGTT CGTGGCCGCG TCCGCCAACT GCACCATGGA 562568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCACCGGC GAGGATCTCG GGGTCACGTT CGTGGCCGCG TCCGCCAACT GCACCATGGA 416 GGAGCTCATG TGTCTCGTCG ACGACCAGGC TCCCGACGAC GAGACAGCGG TGGTGCAGCA 562628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCTCATG TGTCTCGTCG ACGACCAGGC TCCCGACGAC GAGACAGCGG TGGTGCAGCA 476 GCTCGCCTTC AACTGCACGC CCGACGACCT TCATCACCGT CTGCTGTGGG TGCAGGTCAC 562688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCGCCTTC AACTGCACGC CCGACGACCT TCATCACCGT CTGCTGTGGG TGCAGGTCAC 536 CACTCTCAAC TGTGGAGGCT TCGTCGTCGG GGTGACATGG AGCCATGGCG TGGCTGACGG 562748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTCTCAAC TGTGGAGGCT TCGTCGTCGG GGTGACATGG AGCCATGGCG TGGCTGACGG 596 TCCCGGCATA GCACAGTTCA TACAAGCCGT CGGCGAGCTC GCCCGTGGCC TGCCATCGCC 562808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCGGCATA GCACAGTTCA TACAAGCCGT CGGCGAGCTC GCCCGTGGCC TGCCATCGCC 656 GTCCGTCGTC CCGGTCAGGT TGGACGACAA GATCGCAACC CAAGCCGTAC CTCCCTTCAC 562868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCGTCGTC CCGGTCAGGT TGGACGACAA GATCGCAACC CAAGCCGTAC CTCCCTTCAC 716 CATGGCCGTT CATCGCTTCA TATCCGGCCT CAAGCCAGTA TCAAACCTCG ACGTACGCAA 562928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGCCGTT CATCGCTTCA TATCCGGCCT CAAGCCAGTA TCAAACCTCG ACGTACGCAA 776 CGTCACCGTC TCATCTAGCC TTATCAACCA CATCATCGTC GGAGCTCGTC GTCGTGCCAC 562988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCACCGTC TCATCTAGCC TTATCAACCA CATCATCGTC GGAGCTCGTC GTCGTGCCAC 836 CGTGTTCGAG GCGGTCGCCG CCGTGCTCTG GCAGTGCCGT ACACGGGTGG TGATGACGGA 563048 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGTTCGAG GCGGTCGCCG CCGTGCTCTG GCAGTGCCGT ACACGGGTGG TGATGACGGA 896 TCCTGAGGCC CCCGCCGTGC TGCTCTTCGC GGTGAACGCA CGCAAGTACC TCGGCGCCAA 563108 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTGAGGCC CCCGCCGTGC TGCTCTTCGC GGTGAACGCA CGCAAGTACC TCGGCGCCAA 956 GGACGGCTAC TACGGATGCT GCACCGCCAT GCACATGGCC GTGTCCAAGT CCGGCACGGT 563168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACGGCTAC TACGGATGCT GCACCGCCAT GCACATGGCC GTGTCCAAGT CCGGCACGGT 1016 GGCCAACGGC GACATCATGA AGTTGGTCGG CATCATACGC CGCGCCAAGG AGCAGATACC 563228 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCAACGGC GACATCATGA AGTTGGTCGG CATCATACGC CGCGCCAAGG AGCAGATACC 1076 GGAGCAGCTG AAGGCAGACG ACGGCGAGAT GATGCTACGG ACGATGGTAG GGGAGAAGCA 563288 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCAGCTG AAGGCAGACG ACGGCGAGAT GATGCTACGG ACGATGGTAG GGGAGAAGCA 1136 GGTGAATGGA TACGAGAGCC TGCTCTACTT GACATCCTGG CGAAACATCG GGTTCGAGGA 563348 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAATGGA TACGAGAGCC TGCTCTACTT GACATCCTGG CGAAACATCG GGTTCGAGGA 1196 CGTCGATTTC GGCAGCGGGA AGACGGCGAG GGTGATGACC TACCCGCCGA GGATGCTGTC 563408 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGATTTC GGCAGCGGGA AGACGGCGAG GGTGATGACC TACCCGCCGA GGATGCTGTC 1256 CATGATGCCC AGGATTGCGC CCATCTGCTT CATGCTCAAG GCCACAGAGG AAGGGGTCAG 563468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGATGCCC AGGATTGCGC CCATCTGCTT CATGCTCAAG GCCACAGAGG AAGGGGTCAG 1316 GGTCATGTCA GACTGTGTTA CGGCTGACCA CGCCGATGCC TTCTATCAAG AAATAGCCAA 563528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCATGTCA GACTGTGTTA CGGCTGACCA CGCCGATGCC TTCTATCAAG AAATAGCCAA 1376 GCTCAAAGCC ACCACCTGAT TATAACTATA TATGCGAGCT ATCTATACCT TCTTCAATAT 563588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAAAGCC ACCACCTGAT TATAACTATA TATGCGAGCT ATCTATACCT TCTTCAATAT 1436 GCCAATTATG ATTTATCTAC AATAAAAATT TGAATATATA TACCGTGCAA GAGCATGCAT 563648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAATTATG ATTTATCTAC AATAAAAATT TGAATATATA TACCGTGCAA GAGCATGCAT 1496 GAACAAGT 563656 |||||||| GAACAAGT 1504 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|32970379|dbj|AK060361.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-H07, full insert sequence 1 AGCAGCCAGC AGCCAGCAGA ACACCCAGAC GGATATTAAT TTAGAATGAG TATTGTGGTG 61 AGCAAGTCAG CGCCGGTGGT CGTCCGGCCA TCGGAGCCGG CCACATCGAC GGCCGACAAG 121 ATCCTTCTGT CAACTTTGGA CAAGCCTGTT GCCACGATAC CAGTGACCGT GCTACTTGCG 181 TTCGACCACC CCATCCATGA CGCCACCGCG GAGACCATCA AGACGGCTCT CGCTCAATCA 241 CTCGTCCACT ACTATCCTAT CGCCGGCCGC ATTTCCTGCG ACAATGACGA CGGCGGCCAT 301 TTCTACATCG ACTGCACCGG CGAGGATCTC GGGGTCACGT TCGTGGCCGC GTCCGCCAAC 361 TGCACCATGG AGGAGCTCAT GTGTCTCGTC GACGACCAGG CTCCCGACGA CGAGACAGCG 421 GTGGTGCAGC AGCTCGCCTT CAACTGCACG CCCGACGACC TTCATCACCG TCTGCTGTGG 481 GTGCAGGTCA CCACTCTCAA CTGTGGAGGC TTCGTCGTCG GGGTGACATG GAGCCATGGC 541 GTGGCTGACG GTCCCGGCAT AGCACAGTTC ATACAAGCCG TCGGCGAGCT CGCCCGTGGC 601 CTGCCATCGC CGTCCGTCGT CCCGGTCAGG TTGGACGACA AGATCGCAAC CCAAGCCGTA 661 CCTCCCTTCA CCATGGCCGT TCATCGCTTC ATATCCGGCC TCAAGCCAGT ATCAAACCTC 721 GACGTACGCA ACGTCACCGT CTCATCTAGC CTTATCAACC ACATCATCGT CGGAGCTCGT 781 CGTCGTGCCA CCGTGTTCGA GGCGGTCGCC GCCGTGCTCT GGCAGTGCCG TACACGGGTG 841 GTGATGACGG ATCCTGAGGC CCCCGCCGTG CTGCTCTTCG CGGTGAACGC ACGCAAGTAC 901 CTCGGCGCCA AGGACGGCTA CTACGGATGC TGCACCGCCA TGCACATGGC CGTGTCCAAG 961 TCCGGCACGG TGGCCAACGG CGACATCATG AAGTTGGTCG GCATCATACG CCGCGCCAAG 1021 GAGCAGATAC CGGAGCAGCT GAAGGCAGAC GACGGCGAGA TGATGCTACG GACGATGGTA 1081 GGGGAGAAGC AGGTGAATGG ATACGAGAGC CTGCTCTACT TGACATCCTG GCGAAACATC 1141 GGGTTCGAGG ACGTCGATTT CGGCAGCGGG AAGACGGCGA GGGTGATGAC CTACCCGCCG 1201 AGGATGCTGT CCATGATGCC CAGGATTGCG CCCATCTGCT TCATGCTCAA GGCCACAGAG 1261 GAAGGGGTCA GGGTCATGTC AGACTGTGTT ACGGCTGACC ACGCCGATGC CTTCTATCAA 1321 GAAATAGCCA AGCTCAAAGC CACCACCTGA TTATAACTAT ATATGCGAGC TATCTATACC 1381 TTCTTCAATA TGCCAATTAT GATTTATCTA CAATAAAAAT TTGAATATAT ATACCGTGCA 1441 AGAGCATGCA TGAACAAGTA ATTCT Genomic Template: file=OSchr10, strand=+, from=561913, to=563962, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 562074 562092 ( 19 n); cDNA 1 19 ( 19 n); score: 1.000 Intron 1 562093 562216 ( 124 n); Pd: 1.000 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 562217 563662 (1446 n); cDNA 20 1465 (1446 n); score: 1.000 MATCH OSchr10-v3+ 32970379+ 1.000 1446 0.987 C PGS_OSchr10-v3+_32970379+ (562074 562092,562217 563662) Alignment (genomic DNA sequence = upper lines): AGCAGCCAGC AGCCAGCAGG TATGTATGTA TGTGTGTTTA TAGCAAATCC GTTATATTAT 562133 |||||||||| ||||||||| AGCAGCCAGC AGCCAGCAG. .......... .......... .......... .......... 19 ATGGTTGTAA TCTCTATAGT ACTAGATCTG TATGACTACT GTATTAATTA TATGCTTACG 562193 .......... .......... .......... .......... .......... .......... 19 TGATCCTAAC TTATCAATGG TAGAACACCC AGACGGATAT TAATTTAGAA TGAGTATTGT 562253 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...AACACCC AGACGGATAT TAATTTAGAA TGAGTATTGT 56 GGTGAGCAAG TCAGCGCCGG TGGTCGTCCG GCCATCGGAG CCGGCCACAT CGACGGCCGA 562313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAGCAAG TCAGCGCCGG TGGTCGTCCG GCCATCGGAG CCGGCCACAT CGACGGCCGA 116 CAAGATCCTT CTGTCAACTT TGGACAAGCC TGTTGCCACG ATACCAGTGA CCGTGCTACT 562373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATCCTT CTGTCAACTT TGGACAAGCC TGTTGCCACG ATACCAGTGA CCGTGCTACT 176 TGCGTTCGAC CACCCCATCC ATGACGCCAC CGCGGAGACC ATCAAGACGG CTCTCGCTCA 562433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGTTCGAC CACCCCATCC ATGACGCCAC CGCGGAGACC ATCAAGACGG CTCTCGCTCA 236 ATCACTCGTC CACTACTATC CTATCGCCGG CCGCATTTCC TGCGACAATG ACGACGGCGG 562493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACTCGTC CACTACTATC CTATCGCCGG CCGCATTTCC TGCGACAATG ACGACGGCGG 296 CCATTTCTAC ATCGACTGCA CCGGCGAGGA TCTCGGGGTC ACGTTCGTGG CCGCGTCCGC 562553 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTTCTAC ATCGACTGCA CCGGCGAGGA TCTCGGGGTC ACGTTCGTGG CCGCGTCCGC 356 CAACTGCACC ATGGAGGAGC TCATGTGTCT CGTCGACGAC CAGGCTCCCG ACGACGAGAC 562613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTGCACC ATGGAGGAGC TCATGTGTCT CGTCGACGAC CAGGCTCCCG ACGACGAGAC 416 AGCGGTGGTG CAGCAGCTCG CCTTCAACTG CACGCCCGAC GACCTTCATC ACCGTCTGCT 562673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCGGTGGTG CAGCAGCTCG CCTTCAACTG CACGCCCGAC GACCTTCATC ACCGTCTGCT 476 GTGGGTGCAG GTCACCACTC TCAACTGTGG AGGCTTCGTC GTCGGGGTGA CATGGAGCCA 562733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGTGCAG GTCACCACTC TCAACTGTGG AGGCTTCGTC GTCGGGGTGA CATGGAGCCA 536 TGGCGTGGCT GACGGTCCCG GCATAGCACA GTTCATACAA GCCGTCGGCG AGCTCGCCCG 562793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCGTGGCT GACGGTCCCG GCATAGCACA GTTCATACAA GCCGTCGGCG AGCTCGCCCG 596 TGGCCTGCCA TCGCCGTCCG TCGTCCCGGT CAGGTTGGAC GACAAGATCG CAACCCAAGC 562853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCCTGCCA TCGCCGTCCG TCGTCCCGGT CAGGTTGGAC GACAAGATCG CAACCCAAGC 656 CGTACCTCCC TTCACCATGG CCGTTCATCG CTTCATATCC GGCCTCAAGC CAGTATCAAA 562913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTACCTCCC TTCACCATGG CCGTTCATCG CTTCATATCC GGCCTCAAGC CAGTATCAAA 716 CCTCGACGTA CGCAACGTCA CCGTCTCATC TAGCCTTATC AACCACATCA TCGTCGGAGC 562973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCGACGTA CGCAACGTCA CCGTCTCATC TAGCCTTATC AACCACATCA TCGTCGGAGC 776 TCGTCGTCGT GCCACCGTGT TCGAGGCGGT CGCCGCCGTG CTCTGGCAGT GCCGTACACG 563033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTCGTCGT GCCACCGTGT TCGAGGCGGT CGCCGCCGTG CTCTGGCAGT GCCGTACACG 836 GGTGGTGATG ACGGATCCTG AGGCCCCCGC CGTGCTGCTC TTCGCGGTGA ACGCACGCAA 563093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGTGATG ACGGATCCTG AGGCCCCCGC CGTGCTGCTC TTCGCGGTGA ACGCACGCAA 896 GTACCTCGGC GCCAAGGACG GCTACTACGG ATGCTGCACC GCCATGCACA TGGCCGTGTC 563153 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCTCGGC GCCAAGGACG GCTACTACGG ATGCTGCACC GCCATGCACA TGGCCGTGTC 956 CAAGTCCGGC ACGGTGGCCA ACGGCGACAT CATGAAGTTG GTCGGCATCA TACGCCGCGC 563213 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTCCGGC ACGGTGGCCA ACGGCGACAT CATGAAGTTG GTCGGCATCA TACGCCGCGC 1016 CAAGGAGCAG ATACCGGAGC AGCTGAAGGC AGACGACGGC GAGATGATGC TACGGACGAT 563273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGAGCAG ATACCGGAGC AGCTGAAGGC AGACGACGGC GAGATGATGC TACGGACGAT 1076 GGTAGGGGAG AAGCAGGTGA ATGGATACGA GAGCCTGCTC TACTTGACAT CCTGGCGAAA 563333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAGGGGAG AAGCAGGTGA ATGGATACGA GAGCCTGCTC TACTTGACAT CCTGGCGAAA 1136 CATCGGGTTC GAGGACGTCG ATTTCGGCAG CGGGAAGACG GCGAGGGTGA TGACCTACCC 563393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGGGTTC GAGGACGTCG ATTTCGGCAG CGGGAAGACG GCGAGGGTGA TGACCTACCC 1196 GCCGAGGATG CTGTCCATGA TGCCCAGGAT TGCGCCCATC TGCTTCATGC TCAAGGCCAC 563453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGAGGATG CTGTCCATGA TGCCCAGGAT TGCGCCCATC TGCTTCATGC TCAAGGCCAC 1256 AGAGGAAGGG GTCAGGGTCA TGTCAGACTG TGTTACGGCT GACCACGCCG ATGCCTTCTA 563513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAAGGG GTCAGGGTCA TGTCAGACTG TGTTACGGCT GACCACGCCG ATGCCTTCTA 1316 TCAAGAAATA GCCAAGCTCA AAGCCACCAC CTGATTATAA CTATATATGC GAGCTATCTA 563573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAAATA GCCAAGCTCA AAGCCACCAC CTGATTATAA CTATATATGC GAGCTATCTA 1376 TACCTTCTTC AATATGCCAA TTATGATTTA TCTACAATAA AAATTTGAAT ATATATACCG 563633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCTTCTTC AATATGCCAA TTATGATTTA TCTACAATAA AAATTTGAAT ATATATACCG 1436 TGCAAGAGCA TGCATGAACA AGTAATTCT 563662 |||||||||| |||||||||| ||||||||| TGCAAGAGCA TGCATGAACA AGTAATTCT 1465 ******************************************************************************** EST Sequence: file=LIBc9, strand=+, description=gi|37990976|dbj|AK121353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122B16, full insert sequence 1 GTATACCTTT ATTTTCTTCA AACACCTTAT AAGATTGCTA ACACATATAC ACATATGCAA 61 CTGCAAGATA TAAATGGTTT GCTTATTCTT TGCACCTTAA ATGCATTCAC TCACTTTTCC 121 AAAGCCTGTT TACCATATCC ATTCTACTTA TGGTGTTGTT TCCTTTTTGT CCTGACATTG 181 ATGTTCCTTT TTTTTTGGTA TCCCTCAGCC AAGTAATTAT TCGTCCCATT ACATTTGAAG 241 CTTACTTTAT TGGCTTGGGA ATTTCTAACA GTTCATACCA AGCTACAAAA AATTGATAAT 301 TTGTTGTAAT GCCTTTCCAT CTCTGAAGGA TATGTGCTAG TCAATAACAG ATTAACACAG 361 GTCATATTAA AAAAACATGC TAGTTAATAA CTTAAATTTA TTGTGCAATT GGAGCCTTGA 421 AGACTACACT TGACTATGCA ATGCCATAAA AACAATAACA TATTATTTTA TACTAATTGC 481 ATAAATGGGG GAACACCTGA GTTCCCATTT TTCAATTCAT ATACATTTTG CTAAATATGA 541 GGTGCATGCA AAACTCAAAT GCCAAATATG TTTTGTCTTA AACTACTTGT GTCTAGAACA 601 GTGATAAATT ATGATATGAT TCCTTCCCAT AAAATGGGGA GAGAGTATTT AAGTATACAA 661 AGTAATGGTT CCCTTCTCTC ATAACAGACA AGTGTTTCTT GCATGATAAT AATTACTAAA 721 GGAAAGCGTT TCTCTTTACC ATTGGAGTCG GGAATAGAAT TTCTGAACTA TGCCACTGTT 781 GATAGAAAAC ATGTGGCCTG GGAGGTCTGC TTAACTCCAG TGCAGGTCCA AAGCTCGCCT 841 TCGGATGTGT TAGCGTGCCA GTTGATTTGA TCCTGTAATC AACAAGAAAT AGAAGCAAAG 901 AAGCCGTGGT TAAATCTATA AATGATAGCC AATCGGCTAG ATGCCGATGA CATATCATTT 961 ATCTTTGAGC CGATGTCATC TGTGTATCGA TCGGCGGTCA TGAATAAGTA AAAAAGAACT 1021 AAATCTACTC GATCGGCTGT AGATATTAAT GATATATACT CCTTATATCG ATGTATACTT 1081 AAATCAAGTG ATTGGGATAG ATCGGTCATC ATGCCGAGAC AGTATAAATC ACTTAGATCG 1141 AAATATATAT CATTAACAGG ACTATATATG TTTATAGCAT AGCCGATCAG ATAAATCTAG 1201 CATGTATCGG CTAATACTCC GATACTACTC CATACCAGGA TATTAAAGCA AGAATAATGT 1261 ATCAAACAAA GGCCTAACAT ATTTAGATAC AGCAATATCT TGATATAAAG GGCAGATTTA 1321 ACATATCAAT GAGGCATATA GAATAAATAT AGTTAAATCA GATACGATCA GCTGAAACTC 1381 CGATGCTATT CTAATCGGCA ACTAGAAGGC AGGCTAGAGA TCGATATTCT AAGCACGACT 1441 TAATAGATCA AACTCAACTG ATGCAGCATT AAGTATGAAA AGAATAACGA TATCTAGACA 1501 ATCAAGCCGC TAGAAGTTTC ATAGAATGGT AGATATCTCA TATAATCTAG ATCAACATCA 1561 ATATTTAACC TAATCGGCTA CCCTCTATTA ACAGAAGTTA ACCGATGGCA GGTTAGATGA 1621 TGATATTGCT AGAGATTATG TAAGACATAT GATAACTCGA CGAATTACAT AAACGGGATT 1681 AGAGTATCAT AAAGATGGAA GCACTAATCC TAAGAACGCA ATCCGTCATA ACGAATTTTA 1741 CCTCTTGTTG AAGATCGAAA TCGATGCAGC TCAACCCGAA AGCAAGAACT CGTCGAAACA 1801 AAACTAAGCA AAAAGGGTAG CGATACGCCG AGATTGTATT GAACGTGTGT TGTTAAATTA 1861 CATAGGGCTC GGGGTCTATT TATGCCCGAG AATTACAAGA TATGCCCATA CCGGACATGA 1921 CTATTATCTC TAACAAACTC TTAAGATACC ATAAGTCTTT GCGGCAGACT TTTGCCTATA 1981 TTTATCTATA AGGAATTTAC ATAAGATATC CTAATTAATA GATACAATTG CCTTCCCAGG 2041 ACTCTATCCG TGCGTGGCAA TCATCTTGAA CTACATTAAC TTGAACCCGA TGTCGTGTAA 2101 AGTCATATTG TCGGAATCGG CTGTACCGGC TTACTTAGCC CGACTCAGAC CTAGCCGATC 2161 CTAACCGTAG CCGATCTGGA CTCCGGCCGA TTCCTGCTCT GTTTCCGAAC TCGATCTCCG 2221 CTTCCGACTT CGCTTTGATC CAATCTTCTT TCCTGACACC GATGTTACCA AATTTGGTTG 2281 TTAACAGCCA CCTAAGCCTT GTTGCACTTA TATTTCGTTG GAATTTCTGA AATACAGAAA 2341 GAACTATTAA ATTAAAAAGA GTGAAACTCC ACTAGCAGCA TGCATAGTAA ATCTGCATAG 2401 GACCCGGCAA CTCAATCGTC ATATAAAACC TTTTTGTTGC AACAAATTTC CTATCCGTGG 2461 CATCTTAATT TTCTCCCAAG CTTTGCACAT AGCAGTATCA TCTTTTTGGT TTTCACCATC 2521 CTCAGTCTTT TGATCACTGG TGCCAAGATG TAATATAAGT CTTAAGCACA ATTGGTTTGA 2581 ATCAATCAAA ACTAAGAAAA CTACAATCTT GGGCATAATA CATAAAATGT TGTGCTCCAT 2641 TTTTTCTCCA GGAATGCATA GTTAACTTAA TGCTAGGTTT TAATTTATCA TGATCTGTAC 2701 CTCATCGCAT TGAATTTTAC CATCACATGT TTTTTCTCTA TACTGTTTAT CCTTTTTGTA 2761 ACTACCATAG TCCATGTCAT TCTCACCTTG TAAGTTTCTA AAGAAAAAAG CTATATATTG 2821 TCCTGATGCT TCGACATGAG TTGCTCCAGC TCCCGTTTAT GGTTATAACT TGTATGTGCC 2881 CCCATACACT TTTCTGTTTG CTGTCCTTCC TTTTTGTTCT TTGACTAAGA TCCAAAGGGA 2941 GATACAGTTA TCTACAGCTA GACAAACACA ACTTCATGCG CACTCTCTTT TCCTGTATTG 3001 ACTGTCCACC TAGGGCACCA TTTGTTGCCT TGGAATTTAT TTGGAGATGT CTCTTTCCTT 3061 TCCTTGGGTG ACTCTCACCT AGCTTTACTT GTACAAGATG AAAAAACTGT GTGAAACAAG 3121 AGGGCTCAGC CTACCTACAG AATTTTGAAG AAAATGCAAT AAATATCATG AATTTCTTGT 3181 TCATTGTTGA CTATTTCAAG AAAATATTTG TAAACAGTGA GCAAATTTGA ATTTCAACTT 3241 GATTGGAAAC ATAGAGGAAA AACATGTGTT TTATTATATT TTTTGGAGAA ATACATTTAA 3301 ATGCAGTGCA ACTTGCCTGG GTTAAAATGA ACATCCAGTT CAATCAACGA AGTCTATCAT 3361 AGTTAGGGAT TAAACCGTCT TGTTGAATTA GGATAGAACG CGCATTGTAT TTGTGCCACA 3421 GCCTTCTTTT TTTTTTCGCC GGGTTGGCCG AAGGAATGGC TGACCAAATT TCATTAAGAT 3481 TGGAAGAAAA CAAATTACAA ACATACAAGG GTACATCGAC AAGAAGTTGT CGAACGTGTT 3541 GTGAGGCAAA ACCTTACCCC ACGAGAAAGG GAAAATAAAA AGCCCTAAGG CTGAAAAACA 3601 GTTCTACTTC TCACAATGTG AAAAGAGACC TGCAGACTTC CAGATGATTA TTTCCTCTTT 3661 GATATCCTCA ACCAACTGAG CAGGGTTTTT GTCTCTTTGT TCGAATACTC TTGCGTTTCT 3721 TTCCTTCCAA ATTAGCCAAC AGATCATCAT GAAAACACTG CCAAAAAGGC TGCCCTGTGT 3781 GGCCTTTAAT CTCACCAGAT GTGAAATGTC ATATACAAGA TAACATAAAA GGATATTCTC 3841 TGAGTTCGTT TCTTGTGGCA GTTTTCTAAT ATTTATTGCA CTGCATTATA GAGCATGGCA 3901 CCTCTTATGA CATCCATCTC AACACTGCCA CAACCTCTTC TAACACCTTA TGCGGTCTAA 3961 ATGAAGCTGC AGCACTGTGG CATGTATGGA ATAAGTTGTT TTTGGTTGGA TACAAAGTCA 4021 ACAAAAACAT TGGTTGTGCT ATTCTTTTGC ACTGATGAAA TGCTCAGATA TGTGAAGCCT 4081 TGTTTTCATT TGCCTCACTC TGTATAAACT GTAGAAGATT GTCCATTATT ATATTTTTGG 4141 AGGGTTAATA TAACACACGA GCTAGTACTT TGCCGCCCAT CATCCAGATT TGTTTGAAAC 4201 ATGCAGAACA GGTATTGCAT ATATAGCAAA TGTTGCAGTC CGAAAGGAAG AACGTCGTAA 4261 AGGAATCGCT AAAATGCTTG TTGCAGAAGC AGAGGAGCGA GCAAAGAGTT GGGGTTGCCG 4321 ATCCATGGCA TTACATTGTG ATGTAAACAA CATTGCTGCG CTGCGTCTGT ACAAAAATCT 4381 AGGATACAAA TGCATCCATG TACCAGAAGA TGCTAAGTGG CCAGAACCTA AGATAGCAAA 4441 AGGAGTGCGA TACAACTTTA TGATGAAGCT AGTACCCAAG ATGTAGTGTA TATGATCAGA 4501 ACAGAGAAAC TGAGACACAG CTTCACACTT GAAGCTATTA CCCAAGATTT GAAGTGTATA 4561 CGATCAGAGT AGAGCAATTG AAACATGTAG ATACTACAGT GATGTGCGAG CTCATTCACT 4621 TCACATGTAT AGTAGCTGTA TAGTGGAGAC TGGACAGTAC ATTGTATGGC ATATAATTGC 4681 TATGTATTGT TTTGAAGTAG TAACCATGAC ATCATTCCTT CACTCAGAGC TCCTGAGAAG 4741 TAGCCTGAAG AAGGAAACAA ACCATACAGC TTCCAACATT ATTTATTGTT GTTCTCAATA 4801 TATGATGATA TCCCCCTTTT CC Genomic Template: file=OSchr10, strand=+, from=571706, to=573214, description=OSchr10-v3 TIGR Release 3.0 chr10|11676 osa1 22698374 bp Predicted gene structure: Exon 1 571842 573214 (1373 n); cDNA 786 2158 (1373 n); score: 0.843 MATCH OSchr10-v3+ 37990976+ 0.843 1373 0.910 G PGS_OSchr10-v3+_37990976+ (571842 573214) Alignment (genomic DNA sequence = upper lines): AAAACACGAG GCCTGGAAGA TCTGCTTAAC TCCAGTGCAG GTCCAAAACT CGCCTTCGGA 571901 |||||| | | |||||| || |||||||||| |||||||||| ||||||| || |||||||||| AAAACATGTG GCCTGGGAGG TCTGCTTAAC TCCAGTGCAG GTCCAAAGCT CGCCTTCGGA 845 TATATGAGCG TGCCAGTCGA TTTGATCCTA CAATCAACAA AAAAT-GAAG ACAAAGAAAC 571960 | | | |||| ||||||| || ||||||||| ||||||||| |||| |||| ||||||| | TGTGTTAGCG TGCCAGTTGA TTTGATCCTG TAATCAACAA GAAATAGAAG -CAAAGAAGC 904 CGTAATTAAA TCTATAAATG ATAGCCGATC GGCTGGGTAC TGATGAC--A TCATTTATTT 572018 ||| ||||| |||||||||| |||||| ||| |||| | | | |||||| | |||||||| | CGTGGTTAAA TCTATAAATG ATAGCCAATC GGCTAGATGC CGATGACATA TCATTTATCT 964 TAGA-CCGAT GTCATGTGTG CATCGATCAG CAGTCATGAA TAATTAAGGA AGAACTAAAC 572077 | || ||||| ||||| |||| ||||||| | | |||||||| ||| ||| | ||||||||| TTGAGCCGAT GTCATCTGTG TATCGATCGG CGGTCATGAA TAAGTAAAAA AGAACTAAAT 1024 CTACTCGATT GGCTGTAGAC ATTAACAATA TATAATTCTT ATGTCGATAT ATACTTAAAT 572137 ||||||||| ||||||||| ||||| ||| |||| | ||| || ||||| | |||||||||| CTACTCGATC GGCTGTAGAT ATTAATGATA TATACTCCTT ATATCGATGT ATACTTAAAT 1084 CAAGTGATTG GGATAGATCG GTCGCCATGC CGAGACAGTA TAAATCACTT AGATCGAAAT 572197 |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| CAAGTGATTG GGATAGATCG G